Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	713,902	A→G	K374K (AAA→AAG)	pgm →	phosphoglucomutase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	713,902	0	A	G	100.0%	740.4 / NA	212	K374K (AAA→AAG)	pgm	phosphoglucomutase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (93/119); total (93/119)

Only 100 of 220 total aligned reads displayed.

CGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAATGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCC  >  NC_000913/713812‑713991

cGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTg                                                                                         >  1:4429847/1‑93 (MQ=255)

 gTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTgg                                                                                        <  1:6193208/93‑1 (MQ=255)

   cGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGtt                                                                                      <  1:982664/93‑1 (MQ=255)

   cGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGtt                                                                                      <  1:5567733/93‑1 (MQ=255)

    ggTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGttt                                                                                     <  1:1221380/93‑1 (MQ=255)

    ggTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGttt                                                                                     <  2:3788488/93‑1 (MQ=255)

    ggTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGttt                                                                                     >  1:2363114/1‑93 (MQ=255)

    ggTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGttt                                                                                     <  2:5588686/93‑1 (MQ=255)

      tAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGt                                                                                   >  1:5404018/1‑93 (MQ=255)

        aaaCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCg                                                                                 >  2:2387970/1‑93 (MQ=255)

        aaaCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCg                                                                                 >  1:5186047/1‑93 (MQ=255)

        aaaCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCg                                                                                 <  1:4784525/93‑1 (MQ=255)

        aaaCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCg                                                                                 <  1:1349627/93‑1 (MQ=255)

         aaCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGa                                                                                <  1:5283397/93‑1 (MQ=255)

          aCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAGGTCCCGGTAGGTTTCAAGTGGTTTGTCGAt                                                                               >  1:4061246/1‑93 (MQ=255)

          aCGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGAt                                                                               <  1:697504/93‑1 (MQ=255)

           cGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATg                                                                              >  1:2481567/1‑93 (MQ=255)

               ggTTTCATCTGCGTTTATCAAGCGTGTGGTCAACCACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCt                                                                          <  1:5592711/93‑1 (MQ=255)

               ggTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCt                                                                          <  1:5260625/93‑1 (MQ=255)

               ggTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCt                                                                          <  1:5917720/93‑1 (MQ=255)

                gTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTg                                                                         <  1:4197004/93‑1 (MQ=255)

                  ttCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGtt                                                                       <  2:3395928/93‑1 (MQ=255)

                   tCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTc                                                                      <  1:1074214/93‑1 (MQ=255)

                     aTCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGa                                                                    >  2:510055/1‑93 (MQ=255)

                     aTCTGCGATGATCGACCGTGTGATCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGa                                                                    <  2:3958914/93‑1 (MQ=255)

                      tCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGAc                                                                   <  2:1988156/93‑1 (MQ=255)

                       cTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACg                                                                  <  2:4317988/93‑1 (MQ=255)

                       cTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACg                                                                  >  2:659609/1‑93 (MQ=255)

                        tGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACgg                                                                 >  1:3709665/1‑93 (MQ=255)

                           gatgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAg                                                              >  1:1193779/1‑93 (MQ=255)

                           gatgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAg                                                              >  1:3035841/1‑93 (MQ=255)

                            atgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGc                                                             >  1:5580669/1‑93 (MQ=255)

                            atgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGc                                                             <  1:866897/93‑1 (MQ=255)

                             tgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCt                                                            <  1:113481/93‑1 (MQ=255)

                             tgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCt                                                            >  1:2183774/1‑93 (MQ=255)

                             tgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCt                                                            <  2:4490649/93‑1 (MQ=255)

                             tgatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCt                                                            <  1:4551934/93‑1 (MQ=255)

                              gatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCtt                                                           <  2:4118810/93‑1 (MQ=255)

                              gatCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCtt                                                           <  1:1582889/93‑1 (MQ=255)

                               atCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTc                                                          >  2:496392/1‑93 (MQ=255)

                                tCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCg                                                         >  2:1662083/1‑93 (MQ=255)

                                 cGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCgg                                                        <  1:729070/93‑1 (MQ=255)

                                  gACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGc                                                       >  1:3053676/1‑93 (MQ=255)

                                  gACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGc                                                       >  1:53415/1‑93 (MQ=255)

                                  gACCGTGTGGTCAAAGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGATTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCTGc                                                       >  1:212495/1‑93 (MQ=255)

                                   aCCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGATTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCt                                                      >  2:3046981/1‑93 (MQ=255)

                                    ccGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCtt                                                     <  2:863565/93‑1 (MQ=255)

                                    ccGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCtt                                                     >  2:1699325/1‑93 (MQ=255)

                                    ccGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCtt                                                     <  1:1504726/93‑1 (MQ=255)

                                     cGTGTGGTCAAGGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCttt                                                    <  1:4941299/93‑1 (MQ=255)

                                     cGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCttt                                                    <  2:5398159/93‑1 (MQ=255)

                                     cGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCttt                                                    >  2:2443184/1‑93 (MQ=255)

                                     cGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCttt                                                    <  2:6264584/93‑1 (MQ=255)

                                     cGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCttt                                                    <  2:4217639/93‑1 (MQ=255)

                                      gtgtGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTg                                                   >  2:1438610/1‑93 (MQ=255)

                                      gtgtGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTg                                                   <  1:172032/93‑1 (MQ=255)

                                      gtgtGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTg                                                   <  2:1941686/93‑1 (MQ=255)

                                        gtgGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTggc                                                 <  2:2853462/93‑1 (MQ=255)

                                        gtgGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTggc                                                 <  1:3109986/93‑1 (MQ=255)

                                              aaCGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGaa                                           >  2:6127799/1‑93 (MQ=255)

                                               aCGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAag                                          <  2:1044686/93‑1 (MQ=255)

                                               aCGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAag                                          <  2:5048613/93‑1 (MQ=255)

                                               aCGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAag                                          <  2:738866/93‑1 (MQ=255)

                                               aCGACTGGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAag                                          <  2:1825931/93‑1 (MQ=255)

                                                  aCTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGGCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAagaga                                       >  2:1280528/1‑93 (MQ=255)

                                                    ttGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAagagagg                                     >  2:3643099/1‑92 (MQ=255)

                                                    ttGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGt                                     <  2:3739303/93‑1 (MQ=255)

                                                    ttGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGt                                     <  1:6309228/93‑1 (MQ=255)

                                                     tGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTg                                    >  1:4595583/1‑93 (MQ=255)

                                                      gggCCGTAAAGTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGCCAGCTTCGGCTTTGGCGGCGAAGAGAGTGc                                   <  1:4368379/93‑1 (MQ=255)

                                                       ggCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCa                                  <  2:2692654/93‑1 (MQ=255)

                                                       ggCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCa                                  >  1:2270494/1‑93 (MQ=255)

                                                       ggCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCa                                  >  2:3351466/1‑93 (MQ=255)

                                                        gCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAg                                 >  2:374260/1‑93 (MQ=255)

                                                          cGTAAACTGGTAGAAGTCCCTGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAggg                               <  1:808492/93‑1 (MQ=255)

                                                          cGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAggg                               <  1:4084787/93‑1 (MQ=255)

                                                            tAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGc                             <  1:2015905/93‑1 (MQ=255)

                                                             aaaCTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGct                            <  2:2999541/93‑1 (MQ=255)

                                                             aaaCTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGct                            >  2:824473/1‑93 (MQ=255)

                                                              aaCTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGctt                           >  1:6112891/1‑93 (MQ=255)

                                                                cTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGcttcc                         >  2:5869810/1‑93 (MQ=255)

                                                                 tGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGcttcct                        <  1:4465892/93‑1 (MQ=255)

                                                                   gTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGcttccttc                      >  1:421120/1‑93 (MQ=255)

                                                                     aGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTtccttcct                    <  2:1929969/93‑1 (MQ=255)

                                                                     aGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTtccttcct                    <  2:2296832/93‑1 (MQ=255)

                                                                         gTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGt                >  1:3508507/1‑93 (MQ=255)

                                                                         gTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGt                >  2:5554919/1‑93 (MQ=255)

                                                                         atCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGt                <  1:6420859/92‑1 (MQ=255)

                                                                          tCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGtt               <  1:575690/93‑1 (MQ=255)

                                                                           cccGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGttt              <  1:6037116/93‑1 (MQ=255)

                                                                           cccGGTAGGTTGCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGttt              <  2:464647/93‑1 (MQ=255)

                                                                            ccGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTc             >  1:3231252/1‑93 (MQ=255)

                                                                            ccGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTc             <  1:3627536/93‑1 (MQ=255)

                                                                              ggTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGa           >  2:5276410/1‑93 (MQ=255)

                                                                               gTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGAc          <  1:2576225/93‑1 (MQ=255)

                                                                                tAGGTTTCAAGTGGTGTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACg         <  2:5666455/93‑1 (MQ=255)

                                                                                  ggTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGc       >  1:3552004/1‑93 (MQ=255)

                                                                                     ttCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACg    <  1:2783144/93‑1 (MQ=255)

                                                                                      tCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGc   <  1:3882048/93‑1 (MQ=255)

                                                                                       cAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGcc  <  1:3400059/93‑1 (MQ=255)

CGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAATGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCC  >  NC_000913/713812‑713991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TGCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAATGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTGG  >  NC_000913/713809‑713995

TGCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAG                                                                                               >  SRR4302534.3819715/1‑94 (MQ=60)

TGCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAG                                                                                               >  SRR4302534.704827/1‑94 (MQ=60)

 GCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGT                                                                                              >  SRR4302534.533223/1‑94 (MQ=60)

 GCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGT                                                                                              <  SRR4302534.5607779/94‑1 (MQ=60)

 GCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGT                                                                                              <  SRR4302534.6149971/94‑1 (MQ=60)

 GCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGT                                                                                              >  SRR4302534.2970312/1‑94 (MQ=60)

  CCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTG                                                                                             >  SRR4302534.4549455/1‑94 (MQ=60)

  CCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTG                                                                                             <  SRR4302534.1592775/94‑1 (MQ=60)

   CGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGG                                                                                            >  SRR4302534.743435/1‑94 (MQ=60)

    GTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGT                                                                                           <  SRR4302534.4344364/94‑1 (MQ=60)

    GTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGT                                                                                           <  SRR4302534.6361715/94‑1 (MQ=60)

      CGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTT                                                                                         <  SRR4302534.1007748/94‑1 (MQ=60)

      CGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTT                                                                                         <  SRR4302534.5718092/94‑1 (MQ=60)

      CGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTT                                                                                         >  SRR4302534.2425841/1‑94 (MQ=60)

       TGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTTTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTG                                                                                        <  SRR4302534.1231135/94‑1 (MQ=60)

       GGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTG                                                                                        >  SRR4302534.6267334/1‑94 (MQ=60)

       GGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTG                                                                                        <  SRR4302534.1253532/94‑1 (MQ=60)

        GTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGT                                                                                       >  SRR4302534.5549453/1‑94 (MQ=60)

         TAAAACGCTGATTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTC                                                                                      <  SRR4302534.3341006/94‑1 (MQ=60)

          AAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCG                                                                                     >  SRR4302534.5325833/1‑94 (MQ=60)

           AAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGA                                                                                    <  SRR4302534.4914455/94‑1 (MQ=60)

           AAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGA                                                                                    <  SRR4302534.1385195/94‑1 (MQ=60)

            AACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAGGTCCCGGTAGGTTTCAAGTGGTTTGTCGAT                                                                                   >  SRR4302534.4170188/1‑94 (MQ=60)

            AACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGAT                                                                                   <  SRR4302534.5426036/94‑1 (MQ=60)

            AACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGAT                                                                                   >  SRR4302534.6546894/1‑94 (MQ=60)

             ACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATG                                                                                  <  SRR4302534.714584/94‑1 (MQ=60)

             ACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATG                                                                                  <  SRR4302534.4722272/94‑1 (MQ=60)

             ACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATG                                                                                  >  SRR4302534.2547473/1‑94 (MQ=60)

             ACGCTGGTTTCATCTGCGATAATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATG                                                                                  >  SRR4302534.6473566/1‑94 (MQ=60)

              CGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCACGGTAGGTTTCAAGTGGTCTGTCGATGG                                                                                 >  SRR4302534.4191662/1‑94 (MQ=60)

               GCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGT                                                                                <  SRR4302534.348325/94‑1 (MQ=60)

                  GGTTTCATCTGCGTTTATCAAGCGTGTGGTCAACCACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTG                                                                             <  SRR4302534.5743909/94‑1 (MQ=60)

                  GGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTG                                                                             <  SRR4302534.6078402/94‑1 (MQ=60)

                  GGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTG                                                                             <  SRR4302534.5402762/94‑1 (MQ=60)

                  GGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGGCTG                                                                             >  SRR4302534.817531/1‑94 (MQ=60)

                   GTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGT                                                                            <  SRR4302534.4310366/94‑1 (MQ=60)

                     TTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTC                                                                          <  SRR4302534.5742377/94‑1 (MQ=60)

                     TTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTC                                                                          <  SRR4302534.3239472/94‑1 (MQ=60)

                      TCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCG                                                                         <  SRR4302534.1102093/94‑1 (MQ=60)

                      TCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGCAGGTGTCAAGTGGTTTGTCGATGGTCGGTTCG                                                                         >  SRR4302534.6646342/1‑94 (MQ=60)

                        ATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGAC                                                                       >  SRR4302534.4666638/1‑94 (MQ=60)

                        ATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGAC                                                                       <  SRR4302534.5502756/94‑1 (MQ=60)

                        ATCTGCGATGATCGACCGTGTGGTCAACGACTGGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGAC                                                                       <  SRR4302534.219292/94‑1 (MQ=60)

                         TCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACG                                                                      <  SRR4302534.5335955/94‑1 (MQ=60)

                          GTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGG                                                                     >  SRR4302534.3809397/1‑94 (MQ=60)

                           TGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGC                                                                    <  SRR4302534.2616978/94‑1 (MQ=60)

                            GCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCA                                                                   <  SRR4302534.6109393/94‑1 (MQ=60)

                             CGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAG                                                                  >  SRR4302534.3115454/1‑94 (MQ=60)

                             CGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAG                                                                  >  SRR4302534.1225178/1‑94 (MQ=60)

                              GATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGC                                                                 >  SRR4302534.5731443/1‑94 (MQ=60)

                               ATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCT                                                                >  SRR4302534.1356291/1‑94 (MQ=60)

                               ATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCT                                                                >  SRR4302534.2241504/1‑94 (MQ=60)

                               ATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCT                                                                <  SRR4302534.888784/94‑1 (MQ=60)

                               ATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGGAGAAGTCCCGGTAGGGTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCT                                                                >  SRR4302534.3537823/1‑94 (MQ=60)

                                TGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTT                                                               <  SRR4302534.4675326/94‑1 (MQ=60)

                                TGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTT                                                               <  SRR4302534.116503/94‑1 (MQ=60)

                                 GATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTC                                                              <  SRR4302534.2238195/94‑1 (MQ=60)

                                 GATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTC                                                              <  SRR4302534.5718591/94‑1 (MQ=60)

                                 GATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTC                                                              <  SRR4302534.1624291/94‑1 (MQ=60)

                                  ATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCG                                                             <  SRR4302534.3174674/94‑1 (MQ=60)

                                   TCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGG                                                            >  SRR4302534.5430744/1‑94 (MQ=60)

                                    CGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGC                                                           >  SRR4302534.54852/1‑94 (MQ=60)

                                    CGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGC                                                           >  SRR4302534.3133797/1‑94 (MQ=60)

                                    CGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGC                                                           <  SRR4302534.747074/94‑1 (MQ=60)

                                    CGACCGTGTGGTCAAAGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGATTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCTGC                                                           >  SRR4302534.218064/1‑94 (MQ=60)

                                     GACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCT                                                          >  SRR4302534.1596752/1‑94 (MQ=60)

                                       CCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTT                                                        <  SRR4302534.1544313/94‑1 (MQ=60)

                                        CGTGTGGTCAAGGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTG                                                       <  SRR4302534.5075175/94‑1 (MQ=60)

                                         GTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGG                                                      <  SRR4302534.176567/94‑1 (MQ=60)

                                          TGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGC                                                     <  SRR4302534.3972586/94‑1 (MQ=60)

                                          TGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGC                                                     >  SRR4302534.4334143/1‑94 (MQ=60)

                                           GTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCG                                                    <  SRR4302534.3191772/94‑1 (MQ=60)

                                            TGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGG                                                   <  SRR4302534.139435/94‑1 (MQ=60)

                                             GGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGC                                                  >  SRR4302534.4228730/1‑94 (MQ=60)

                                                CAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAA                                               <  SRR4302534.3983968/94‑1 (MQ=60)

                                                 AACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAG                                              >  SRR4302534.4692153/1‑94 (MQ=60)

                                                   CGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCTCCGGCAGCTTCGGCTTTGGCCGCGCAGAG                                            >  SRR4302534.2826250/1‑94 (MQ=60)

                                                   CGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAG                                            >  SRR4302534.5425668/1‑94 (MQ=60)

                                                   CGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAG                                            >  SRR4302534.3797935/1‑94 (MQ=60)

                                                       TTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTG                                        >  SRR4302534.4720305/1‑94 (MQ=60)

                                                       TTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTG                                        <  SRR4302534.1527164/94‑1 (MQ=60)

                                                       TTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTG                                        <  SRR4302534.6479805/94‑1 (MQ=60)

                                                         GGGCCGTAAAGTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGCCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCA                                      <  SRR4302534.4486112/94‑1 (MQ=60)

                                                         GGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCA                                      >  SRR4302534.2330699/1‑94 (MQ=60)

                                                          gtcctTAAACTGGTAGAATGCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAG                                     <  SRR4302534.1257236/89‑1 (MQ=60)

                                                            GCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGG                                   <  SRR4302534.1813243/94‑1 (MQ=60)

                                                            CCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGG                                   <  SRR4302534.5772575/94‑1 (MQ=60)

                                                             CGTAAACTGGTAGAAGTCCCTGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGG                                  <  SRR4302534.828809/94‑1 (MQ=60)

                                                             CGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGG                                  <  SRR4302534.4194472/94‑1 (MQ=60)

                                                             CGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGG                                  >  SRR4302534.2142494/1‑94 (MQ=60)

                                                               TAAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCT                                <  SRR4302534.2068671/94‑1 (MQ=60)

                                                                AAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTT                               >  SRR4302534.860713/1‑94 (MQ=60)

                                                                AAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTT                               >  SRR4302534.4060072/1‑94 (MQ=60)

                                                                AAACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTT                               >  SRR4302534.6279185/1‑94 (MQ=60)

                                                                 AACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTC                              <  SRR4302534.100941/94‑1 (MQ=60)

                                                                  ACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGGAGAGAGGGCAGGGGCTTCC                             >  SRR4302534.4537212/1‑94 (MQ=60)

                                                                  ACTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCC                             >  SRR4302534.5305416/1‑94 (MQ=60)

                                                                   CTGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCT                            <  SRR4302534.484660/94‑1 (MQ=60)

                                                                    TGGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTT                           <  SRR4302534.4586652/94‑1 (MQ=60)

                                                                     GGTAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTC                          >  SRR4302534.431886/1‑94 (MQ=60)

                                                                       TAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCT                        <  SRR4302534.6279893/94‑1 (MQ=60)

                                                                       TAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCT                        >  SRR4302534.2268456/1‑94 (MQ=60)

                                                                       TAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCT                        <  SRR4302534.5623837/94‑1 (MQ=60)

                                                                       TAGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCT                        <  SRR4302534.844592/94‑1 (MQ=60)

                                                                        AGAAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTG                       <  SRR4302534.2448828/94‑1 (MQ=60)

                                                                          AAGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCG                     >  SRR4302534.6008226/1‑94 (MQ=60)

                                                                           AGTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGT                    >  SRR4302534.3602895/1‑94 (MQ=60)

                                                                            GTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTT                   >  SRR4302534.1735738/1‑94 (MQ=60)

                                                                            GTCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTT                   <  SRR4302534.2416786/94‑1 (MQ=60)

                                                                            ATCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTT                   <  SRR4302534.6594047/94‑1 (MQ=60)

                                                                             TCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTT                  >  SRR4302534.3638908/1‑94 (MQ=60)

                                                                             TCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTT                  <  SRR4302534.5881916/94‑1 (MQ=60)

                                                                             TCCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTT                  <  SRR4302534.589822/94‑1 (MQ=60)

                                                                              CCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTC                 <  SRR4302534.542368/94‑1 (MQ=60)

                                                                              CCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTC                 <  SRR4302534.6201188/94‑1 (MQ=60)

                                                                              CCCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTC                 >  SRR4302534.3317133/1‑94 (MQ=60)

                                                                               CCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTTCTTCCTGCCTTTCG                >  SRR4302534.6420540/1‑94 (MQ=60)

                                                                               CCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCG                <  SRR4302534.1207160/94‑1 (MQ=60)

                                                                               CCGGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCG                <  SRR4302534.3725047/94‑1 (MQ=60)

                                                                                 GGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGAC              >  SRR4302534.2806975/1‑94 (MQ=60)

                                                                                 GGTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGAC              >  SRR4302534.4916753/1‑94 (MQ=60)

                                                                                  GTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGGAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTTCGTTTCGACG             >  SRR4302534.3657854/1‑94 (MQ=60)

                                                                                  GTAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACG             <  SRR4302534.2644464/94‑1 (MQ=60)

                                                                                   TAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGG            >  SRR4302534.911775/1‑94 (MQ=60)

                                                                                   TAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGG            >  SRR4302534.298490/1‑94 (MQ=60)

                                                                                   TAGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGG            <  SRR4302534.4315082/94‑1 (MQ=60)

                                                                                    AGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGC           >  SRR4302534.113521/1‑94 (MQ=60)

                                                                                    AGGTTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGC           >  SRR4302534.3647530/1‑94 (MQ=60)

                                                                                       TTTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACG        <  SRR4302534.455661/94‑1 (MQ=60)

                                                                                        TTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGC       <  SRR4302534.2856351/94‑1 (MQ=60)

                                                                                        TTCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGC       <  SRR4302534.313166/94‑1 (MQ=60)

                                                                                         TCAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCC      <  SRR4302534.3986281/94‑1 (MQ=60)

                                                                                         TCAAGTGGTTCGTCGATGGTCTGGTCGACGGCATCTTCGGCTTTGGCGGCGAAGATAGTGCAGGGTCTTCCTTCCTGCGTTTCGGCGGCACTCC      <  SRR4302534.6468807/94‑1 (MQ=60)

                                                                                          CAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCG     <  SRR4302534.3491328/94‑1 (MQ=60)

                                                                                          CAAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCG     >  SRR4302534.231859/1‑94 (MQ=60)

                                                                                           AAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGT    >  SRR4302534.3100927/1‑94 (MQ=60)

                                                                                           AAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGT    >  SRR4302534.167684/1‑94 (MQ=60)

                                                                                           AAGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGG    >  SRR4302534.4685188/1‑94 (MQ=60)

                                                                                            AGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTG   >  SRR4302534.5875039/1‑94 (MQ=60)

                                                                                            AGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTG   <  SRR4302534.862654/94‑1 (MQ=60)

                                                                                            AGTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTG   >  SRR4302534.5064479/1‑94 (MQ=60)

                                                                                             GTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTGG  <  SRR4302534.6097037/94‑1 (MQ=60)

                                                                                             GTGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTGG  <  SRR4302534.284807/94‑1 (MQ=60)

TGCCGTCGGTAAAACGCTGGTTTCATCTGCGATGATCGACCGTGTGGTCAACGACTTGGGCCGTAAACTGGTAGAAGTCCCGGTAGGTTTCAAATGGTTTGTCGATGGTCTGTTCGACGGCAGCTTCGGCTTTGGCGGCGAAGAGAGTGCAGGGGCTTCCTTCCTGCGTTTCGACGGCACGCCGTGG  >  NC_000913/713809‑713995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`