Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	715,139	T→C	intergenic (+10/+31)	ybfP → / ← ybfG	putative pectinase/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	715,139	0	T	C	99.2%	861.7 / ‑4.0	253	intergenic (+10/+31)	ybfP/ybfG	putative pectinase/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/1); major base C (108/142); minor base A (2/0); total (110/143)
Fisher's exact test for biased strand distribution p-value = 1.90e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.03e-01

Only 100 of 261 total aligned reads displayed.

ATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAA  >  NC_000913/715049‑715228

atgCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGccc                                                                                         >  1:2582186/1‑93 (MQ=255)

 tgCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCg                                                                                        <  1:1073314/93‑1 (MQ=255)

 tgCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCg                                                                                        >  2:8455633/1‑93 (MQ=255)

 tgCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCg                                                                                        >  1:5750002/1‑93 (MQ=255)

 tgCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCg                                                                                        <  1:2054162/93‑1 (MQ=255)

 tgCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCg                                                                                        >  2:4293434/1‑93 (MQ=255)

     tGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGaa                                                                                    <  2:748686/93‑1 (MQ=255)

      gTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAAt                                                                                   <  1:5983709/93‑1 (MQ=255)

        cGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGa                                                                                 >  2:6098301/1‑93 (MQ=255)

        cGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGa                                                                                 >  2:3469691/1‑93 (MQ=255)

         gggATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGaa                                                                                >  2:2748181/1‑93 (MQ=255)

           gATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAc                                                                              >  1:4672325/1‑93 (MQ=255)

            attattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAcc                                                                             <  1:1783170/93‑1 (MQ=255)

             ttattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAccc                                                                            >  1:812872/1‑93 (MQ=255)

               attGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCgg                                                                          >  1:5334028/1‑93 (MQ=255)

                ttGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGa                                                                         >  2:82241/1‑93 (MQ=255)

                 tGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGAc                                                                        >  1:2687148/1‑93 (MQ=255)

                 tGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGAc                                                                        <  2:5424976/93‑1 (MQ=255)

                  gAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGAcc                                                                       >  2:6050808/1‑93 (MQ=255)

                    gTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTg                                                                     <  1:2751860/93‑1 (MQ=255)

                    gTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTg                                                                     <  1:8606169/93‑1 (MQ=255)

                    gTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTg                                                                     >  1:3819778/1‑93 (MQ=255)

                    gTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTg                                                                     >  1:2022830/1‑93 (MQ=255)

                    gTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTg                                                                     >  2:7548215/1‑93 (MQ=255)

                     ttACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGa                                                                    <  2:8174900/93‑1 (MQ=255)

                     ttACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGa                                                                    <  1:352802/93‑1 (MQ=255)

                     ttACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGa                                                                    >  1:4282244/1‑93 (MQ=255)

                      tACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGaa                                                                   >  1:3737752/1‑93 (MQ=255)

                       acgacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAAc                                                                  <  2:5949407/93‑1 (MQ=255)

                        cgacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACa                                                                 <  2:4635323/93‑1 (MQ=255)

                          acgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAAGGAAACCCGGCCCTGACCATg                                                               >  1:1344356/1‑93 (MQ=255)

                            gCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTc                                                             >  1:6454085/1‑93 (MQ=255)

                               gCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTa                                                          <  1:5390736/93‑1 (MQ=255)

                               gCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTa                                                          >  2:2188058/1‑93 (MQ=255)

                               gCCAGTCAGAAAATTGCCAGCAACAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTa                                                          <  2:4775489/93‑1 (MQ=255)

                                ccAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAt                                                         >  2:5862589/1‑93 (MQ=255)

                                ccAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAt                                                         <  2:1951106/93‑1 (MQ=255)

                                ccAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAt                                                         <  2:1207664/93‑1 (MQ=255)

                                ccAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAt                                                         <  1:7007899/93‑1 (MQ=255)

                                 cAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAtt                                                        <  1:101172/93‑1 (MQ=255)

                                     cAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGt                                                    <  1:6557147/93‑1 (MQ=255)

                                      aGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTg                                                   >  1:4723031/1‑93 (MQ=255)

                                        aaaaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGaa                                                 <  2:5639378/93‑1 (MQ=255)

                                        aaaaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGaa                                                 <  2:6659825/93‑1 (MQ=255)

                                        aaaaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGaa                                                 >  1:2479420/1‑93 (MQ=255)

                                         aaaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAAt                                                <  2:1257089/93‑1 (MQ=255)

                                         aaaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAAt                                                >  2:7353560/1‑93 (MQ=255)

                                          aaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATg                                               >  1:714553/1‑93 (MQ=255)

                                          aaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATg                                               <  1:2538360/93‑1 (MQ=255)

                                            ttGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtt                                             >  1:3692266/1‑93 (MQ=255)

                                             tGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGttt                                            <  2:2352786/93‑1 (MQ=255)

                                              gCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttc                                           <  1:7894734/93‑1 (MQ=255)

                                               ccAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttct                                          <  2:5809720/93‑1 (MQ=255)

                                                  gCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttctttc                                       >  1:4144724/1‑93 (MQ=255)

                                                   cAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCa                                      <  2:801145/93‑1 (MQ=255)

                                                    aaGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAt                                     <  2:6193649/93‑1 (MQ=255)

                                                    aaGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAt                                     >  1:3070593/1‑93 (MQ=255)

                                                    aaGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAt                                     >  1:3376484/1‑93 (MQ=255)

                                                    aaGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAt                                     >  1:6123136/1‑93 (MQ=255)

                                                    aaGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAt                                     >  1:5272459/1‑93 (MQ=255)

                                                     aGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAtt                                    >  2:4953696/1‑93 (MQ=255)

                                                     aGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAtt                                    >  1:5571457/1‑93 (MQ=255)

                                                      gAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAttt                                   <  1:5860773/93‑1 (MQ=255)

                                                      gAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAttt                                   <  2:783093/93‑1 (MQ=255)

                                                      gAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGGGAATGTTTCTTTCAttt                                   >  1:7810797/1‑93 (MQ=255)

                                                        aTTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGa                                 <  1:8751818/93‑1 (MQ=255)

                                                        aTTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGa                                 <  2:3425067/93‑1 (MQ=255)

                                                            aaaGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACt                             <  2:389745/93‑1 (MQ=255)

                                                              aGCGATAAATAGACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGc                           >  2:4347144/1‑93 (MQ=255)

                                                               gCGATAAATACACATTAAAATAGTGAGCCCGGGCATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGct                          >  1:2399051/1‑92 (MQ=255)

                                                                cGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAt                         <  2:5077935/93‑1 (MQ=255)

                                                                cGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAt                         >  2:8528021/1‑93 (MQ=255)

                                                                 gATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAtt                        <  2:3049339/93‑1 (MQ=255)

                                                                 gATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAtt                        >  1:195148/1‑93 (MQ=255)

                                                                  aTAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAttt                       >  1:6361120/1‑93 (MQ=255)

                                                                  aTAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAttt                       <  1:7322955/93‑1 (MQ=255)

                                                                   tAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTc                      >  1:50968/1‑93 (MQ=255)

                                                                   tAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTc                      >  2:6391293/1‑93 (MQ=255)

                                                                    aaaTACACGTTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTcc                     >  2:650284/1‑93 (MQ=255)

                                                                    aaaTACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTcc                     <  1:6048607/93‑1 (MQ=255)

                                                                     aaTACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTccc                    >  2:1761263/1‑93 (MQ=255)

                                                                      aTACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCa                   >  1:54655/1‑93 (MQ=255)

                                                                      aTACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCa                   >  1:6920793/1‑93 (MQ=255)

                                                                       tACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCag                  >  1:1219923/1‑93 (MQ=255)

                                                                       tACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCag                  >  2:2417444/1‑93 (MQ=255)

                                                                         cacaTTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCagag                <  1:6622069/93‑1 (MQ=255)

                                                                          acaTTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGt               <  1:4595257/93‑1 (MQ=255)

                                                                           caTTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAGTGTTTCTTTCATTTGATACTGGATTTCCCAGAGtt              >  1:8115829/1‑93 (MQ=255)

                                                                            aTTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTc             <  2:8703837/93‑1 (MQ=255)

                                                                             ttAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAttt                                   >  2:324126/1‑70 (MQ=255)

                                                                             ttAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCa            <  1:569395/93‑1 (MQ=255)

                                                                                aaaTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTa         <  1:8419441/93‑1 (MQ=255)

                                                                                 aaTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTaa        <  2:4552914/93‑1 (MQ=255)

                                                                                 aaTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTaa        <  2:8300849/93‑1 (MQ=255)

                                                                                  aTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAg       <  2:7193318/93‑1 (MQ=255)

                                                                                  aTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAg       >  1:751584/1‑93 (MQ=255)

                                                                                   tAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGc      <  2:2824027/93‑1 (MQ=255)

                                                                                     gTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGa    <  2:6924579/93‑1 (MQ=255)

                                                                                     gTGAGACCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGa    >  2:3533423/1‑93 (MQ=255)

                                                                                       gAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGaaa  <  2:4021776/93‑1 (MQ=255)

ATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAA  >  NC_000913/715049‑715228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAATAAC  >  NC_000913/715046‑715232

ATGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGC                                                                                               <  SRR4302541.8336961/94‑1 (MQ=60)

 TGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCC                                                                                              >  SRR4302541.3532753/1‑94 (MQ=60)

 TGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCC                                                                                              <  SRR4302541.2830987/94‑1 (MQ=60)

  GATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCC                                                                                             >  SRR4302541.2608065/1‑94 (MQ=60)

  GATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCC                                                                                             <  SRR4302541.7500859/94‑1 (MQ=60)

  GATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCC                                                                                             >  SRR4302541.540491/1‑94 (MQ=60)

   ATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCG                                                                                            >  SRR4302541.5808553/1‑94 (MQ=60)

    TGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGG                                                                                           >  SRR4302541.3604207/1‑94 (MQ=60)

    TGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGG                                                                                           <  SRR4302541.2073991/94‑1 (MQ=60)

    TGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGG                                                                                           <  SRR4302541.7002966/94‑1 (MQ=60)

    TGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGG                                                                                           <  SRR4302541.1083312/94‑1 (MQ=60)

       ATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAA                                                                                        >  SRR4302541.2432687/1‑94 (MQ=60)

        TGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAAT                                                                                       <  SRR4302541.6068275/94‑1 (MQ=60)

        TGTCGGGATTATTGAGTTACGACACTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGcct                                                                                       <  SRR4302541.7914820/94‑4 (MQ=60)

         GTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATG                                                                                      <  SRR4302541.6044942/94‑1 (MQ=60)

         GTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATG                                                                                      <  SRR4302541.5470913/94‑1 (MQ=60)

         GTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATG                                                                                      <  SRR4302541.1988086/94‑1 (MQ=60)

         GTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATG                                                                                      >  SRR4302541.543160/1‑94 (MQ=60)

           CGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAA                                                                                    <  SRR4302541.6453300/94‑1 (MQ=60)

            GGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAA                                                                                   >  SRR4302541.2522662/1‑94 (MQ=60)

             GGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAC                                                                                  >  SRR4302541.4719909/1‑94 (MQ=60)

             GGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAC                                                                                  >  SRR4302541.4804287/1‑94 (MQ=60)

             GGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAC                                                                                  >  SRR4302541.5618223/1‑94 (MQ=60)

             GGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAC                                                                                  >  SRR4302541.7704891/1‑94 (MQ=60)

             GGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAC                                                                                  <  SRR4302541.969807/94‑1 (MQ=60)

             GGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAC                                                                                  >  SRR4302541.103163/1‑94 (MQ=60)

              GATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACC                                                                                 <  SRR4302541.7358130/94‑1 (MQ=60)

              GATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACC                                                                                 >  SRR4302541.1724727/1‑94 (MQ=60)

              GATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTAAGCCCGGGAATGAACCC                                                                                 >  SRR4302541.6652921/1‑94 (MQ=60)

               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                <  SRR4302541.712160/94‑1 (MQ=60)

               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                <  SRR4302541.6583683/94‑1 (MQ=60)

               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                <  SRR4302541.3896737/94‑1 (MQ=60)

               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                >  SRR4302541.820300/1‑94 (MQ=60)

               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                <  SRR4302541.1800479/94‑1 (MQ=60)

               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                <  SRR4302541.8672868/94‑1 (MQ=60)

               ATTATAGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                                <  SRR4302541.825930/94‑1 (MQ=60)

                TTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCG                                                                               >  SRR4302541.1329813/1‑94 (MQ=60)

                TTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCG                                                                               <  SRR4302541.2147445/94‑1 (MQ=60)

                 TATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGG                                                                              >  SRR4302541.5388890/1‑94 (MQ=60)

                   TTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGAC                                                                            >  SRR4302541.2713838/1‑94 (MQ=60)

                     GAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCT                                                                          <  SRR4302541.5762736/94‑1 (MQ=60)

                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                         >  SRR4302541.3858253/1‑94 (MQ=60)

                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                         >  SRR4302541.2042390/1‑94 (MQ=60)

                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                         >  SRR4302541.689280/1‑94 (MQ=60)

                       GTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGA                                                                        <  SRR4302541.8698485/94‑1 (MQ=60)

                       GTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGA                                                                        <  SRR4302541.2779507/94‑1 (MQ=60)

                       GTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGA                                                                        >  SRR4302541.4325010/1‑94 (MQ=60)

                        TTACGACGCTGCCAGTCAGAAAATTGCGAGCAAGAATTGAAAGCAATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAA                                                                       <  SRR4302541.3155074/94‑1 (MQ=60)

                        TTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAA                                                                       <  SRR4302541.355975/94‑1 (MQ=60)

                        TTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAA                                                                       <  SRR4302541.6275619/94‑1 (MQ=60)

                        TTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAA                                                                       >  SRR4302541.3775378/1‑94 (MQ=60)

                            GACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAAGGAAACCCGGCCCTGACCATG                                                                   >  SRR4302541.1357606/1‑94 (MQ=60)

                              CGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTC                                                                 >  SRR4302541.6519861/1‑94 (MQ=60)

                              CGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTC                                                                 <  SRR4302541.4296561/94‑1 (MQ=60)

                                 TGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTA                                                              <  SRR4302541.7410310/94‑1 (MQ=60)

                                  GCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAT                                                             <  SRR4302541.5446071/94‑1 (MQ=60)

                                  GCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAT                                                             <  SRR4302541.2615193/94‑1 (MQ=60)

                                   CCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATT                                                            <  SRR4302541.7082450/94‑1 (MQ=60)

                                   CCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATT                                                            <  SRR4302541.5673259/94‑1 (MQ=60)

                                    CAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTG                                                           <  SRR4302541.102026/94‑1 (MQ=60)

                                    CAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTG                                                           <  SRR4302541.3774839/94‑1 (MQ=60)

                                        CAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTG                                                       >  SRR4302541.4771204/1‑94 (MQ=60)

                                        CAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTG                                                       <  SRR4302541.6624183/94‑1 (MQ=60)

                                          GAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAA                                                     <  SRR4302541.8522485/94‑1 (MQ=60)

                                          GAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAA                                                     >  SRR4302541.2504289/1‑94 (MQ=60)

                                           AAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAAT                                                    <  SRR4302541.7197207/94‑1 (MQ=60)

                                           AAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAAT                                                    >  SRR4302541.2042738/1‑94 (MQ=60)

                                            AAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATG                                                   >  SRR4302541.721294/1‑94 (MQ=60)

                                             AATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGT                                                  <  SRR4302541.2563839/94‑1 (MQ=60)

                                              ATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTT                                                 >  SRR4302541.3729620/1‑94 (MQ=60)

                                               TTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTT                                                <  SRR4302541.6484801/94‑1 (MQ=60)

                                                TGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTC                                               >  SRR4302541.8213316/1‑94 (MQ=60)

                                                 GCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCT                                              <  SRR4302541.115699/94‑1 (MQ=60)

                                                 GCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCT                                              <  SRR4302541.7981544/94‑1 (MQ=60)

                                                  CCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTT                                             <  SRR4302541.667265/94‑1 (MQ=60)

                                                  CCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTT                                             >  SRR4302541.7495967/1‑94 (MQ=60)

                                                   CAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGGCTTATTGCGTGAATGTCTCTTT                                            <  SRR4302541.244103/94‑1 (MQ=60)

                                                    AGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTC                                           >  SRR4302541.4185689/1‑94 (MQ=60)

                                                     GCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCA                                          >  SRR4302541.1374963/1‑94 (MQ=60)

                                                      CAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAT                                         >  SRR4302541.1215632/1‑94 (MQ=60)

                                                      CAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAT                                         >  SRR4302541.6185678/1‑94 (MQ=60)

                                                      CAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAT                                         >  SRR4302541.3410143/1‑94 (MQ=60)

                                                      CAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAT                                         >  SRR4302541.3101736/1‑94 (MQ=60)

                                                      CAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAT                                         >  SRR4302541.5326775/1‑94 (MQ=60)

                                                      CAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAT                                         >  SRR4302541.5376897/1‑94 (MQ=60)

                                                       AAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATT                                        >  SRR4302541.5628494/1‑94 (MQ=60)

                                                       AAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATT                                        <  SRR4302541.1827342/94‑1 (MQ=60)

                                                        AGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTT                                       >  SRR4302541.5339313/1‑94 (MQ=60)

                                                        AGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGGGAATGTTTCTTTCATTT                                       >  SRR4302541.7895206/1‑94 (MQ=60)

                                                         acgctcttccgatcttgacattATTAAAATAGTGAGCCCGGTAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTG                                      <  SRR4302541.327018/72‑1 (MQ=60)

                                                         GAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTG                                      <  SRR4302541.5920376/94‑1 (MQ=60)

                                                         GAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTG                                      <  SRR4302541.810344/94‑1 (MQ=60)

                                                          AATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGA                                     >  SRR4302541.8041377/1‑94 (MQ=60)

                                                          AATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGA                                     <  SRR4302541.2051398/94‑1 (MQ=60)

                                                           ATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGAT                                    <  SRR4302541.8239249/94‑1 (MQ=60)

                                                           ATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGAT                                    >  SRR4302541.3833061/1‑94 (MQ=60)

                                                           ATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGAT                                    <  SRR4302541.8845437/94‑1 (MQ=60)

                                                              GAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACT                                 <  SRR4302541.5810969/94‑1 (MQ=60)

                                                               AAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTG                                >  SRR4302541.4778735/1‑94 (MQ=60)

                                                                 AGCGATAAATACACATTAAAATAGTGAGCCCGGGCATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCT                              >  SRR4302541.2422559/1‑94 (MQ=60)

                                                                 AGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCA                              >  SRR4302541.2724062/1‑94 (MQ=60)

                                                                 AGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCA                              <  SRR4302541.5202656/94‑1 (MQ=60)

                                                                  GCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAT                             <  SRR4302541.2990037/94‑1 (MQ=60)

                                                                  GCAATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAT                             <  SRR4302541.6170428/94‑1 (MQ=60)

                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                            <  SRR4302541.4660906/94‑1 (MQ=60)

                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                            >  SRR4302541.196625/1‑94 (MQ=60)

                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                            <  SRR4302541.4660903/94‑1 (MQ=60)

                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                            <  SRR4302541.4583198/94‑1 (MQ=60)

                                                                    GATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTT                           >  SRR4302541.4012245/1‑94 (MQ=60)

                                                                    GATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTT                           >  SRR4302541.6426163/1‑94 (MQ=60)

                                                                    GATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTT                           <  SRR4302541.2570793/94‑1 (MQ=60)

                                                                    GATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTT                           <  SRR4302541.6007190/94‑1 (MQ=60)

                                                                     ATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTC                          >  SRR4302541.51365/1‑94 (MQ=60)

                                                                     ATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTC                          <  SRR4302541.7401156/94‑1 (MQ=60)

                                                                     ATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTC                          >  SRR4302541.345197/1‑94 (MQ=60)

                                                                      TAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCC                         <  SRR4302541.252695/94‑1 (MQ=60)

                                                                       AAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCC                        <  SRR4302541.6110463/94‑1 (MQ=60)

                                                                       AAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCC                        >  SRR4302541.1888870/1‑94 (MQ=60)

                                                                        AATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                       >  SRR4302541.55084/1‑94 (MQ=60)

                                                                        AATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                       >  SRR4302541.6994649/1‑94 (MQ=60)

                                                                         ATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAG                      >  SRR4302541.1231854/1‑94 (MQ=60)

                                                                         ATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAG                      >  SRR4302541.4764501/1‑94 (MQ=60)

                                                                           ACTCATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAG                    <  SRR4302541.5907400/94‑1 (MQ=60)

                                                                           ACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGCG                    >  SRR4302541.5523325/1‑94 (MQ=60)

                                                                           ACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAG                    <  SRR4302541.786211/94‑1 (MQ=60)

                                                                            CACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGT                   >  SRR4302541.8769299/1‑94 (MQ=60)

                                                                            CACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGT                   <  SRR4302541.6689937/94‑1 (MQ=60)

                                                                            CACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGT                   <  SRR4302541.2681189/94‑1 (MQ=60)

                                                                             ACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAGTGTTTCTTTCATTTGATACTGGATTTCCCAGAGTT                  >  SRR4302541.8204735/1‑94 (MQ=60)

                                                                             ACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTT                  <  SRR4302541.4641868/94‑1 (MQ=60)

                                                                              CATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTC                 <  SRR4302541.2859667/94‑1 (MQ=60)

                                                                               ATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCA                <  SRR4302541.3698850/94‑1 (MQ=60)

                                                                                TTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAG               <  SRR4302541.574752/94‑1 (MQ=60)

                                                                                 TAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGA              >  SRR4302541.6876095/1‑94 (MQ=60)

                                                                                   AAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTGTTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAA            <  SRR4302541.4490724/94‑1 (MQ=60)

                                                                                   AAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAA            <  SRR4302541.8510458/94‑1 (MQ=60)

                                                                                   AAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAA            >  SRR4302541.6060992/1‑94 (MQ=60)

                                                                                    AATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAG           >  SRR4302541.758681/1‑94 (MQ=60)

                                                                                     ATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGC          <  SRR4302541.3828136/94‑1 (MQ=60)

                                                                                      TAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCG         <  SRR4302541.6229576/94‑1 (MQ=60)

                                                                                         TGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAA      >  SRR4302541.575241/1‑94 (MQ=60)

                                                                                          GAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAAT     >  SRR4302541.7961433/1‑94 (MQ=60)

                                                                                          GAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAAT     >  SRR4302541.2639622/1‑94 (MQ=60)

                                                                                          GAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGGTTCTTTCATTTGATACTGGATTTCCCAGAGTTTCGTAATCGAAAT     >  SRR4302541.7961434/1‑94 (MQ=60)

                                                                                             CCCGGAAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAATAAC  >  SRR4302541.2346524/1‑94 (MQ=60)

ATGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAATAAC  >  NC_000913/715046‑715232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`