Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 715,139 T→C intergenic (+10/+31) ybfP → / ← ybfG putative pectinase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913715,1390TC100.0% 657.7 / NA 188intergenic (+10/+31)ybfP/ybfGputative pectinase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (78/110);  total (78/110)

Only 100 of 191 total aligned reads displayed.

ATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAA  >  NC_000913/715049‑715228
                                                                                          |                                                                                         
  gCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCgg                                                                                       >  1:1814149/1‑93 (MQ=255)
   cATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCggg                                                                                      <  2:50719/93‑1 (MQ=255)
   cATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCggg                                                                                      <  1:5802119/93‑1 (MQ=255)
     tGTCGTGTTTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGaa                                                                                    <  2:873616/93‑1 (MQ=255)
     tGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGaa                                                                                    >  2:4597968/1‑93 (MQ=255)
      gTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAAt                                                                                   <  2:2546393/93‑1 (MQ=255)
       tCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATg                                                                                  >  1:3597403/1‑93 (MQ=255)
        cGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGAAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGa                                                                                 <  2:1868739/93‑1 (MQ=255)
            attattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAcc                                                                             <  2:6215195/93‑1 (MQ=255)
            attattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAcc                                                                             >  2:3594282/1‑93 (MQ=255)
             ttattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAccc                                                                            <  1:4637619/93‑1 (MQ=255)
             ttattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAAccc                                                                            >  1:3450519/1‑93 (MQ=255)
              tattGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCg                                                                           <  2:5314351/93‑1 (MQ=255)
                ttGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGa                                                                         >  1:4398465/1‑93 (MQ=255)
                  gAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGAcc                                                                       <  2:2062369/93‑1 (MQ=255)
                  gAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGAcc                                                                       <  1:598144/93‑1 (MQ=255)
                   aGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCt                                                                      <  2:1252536/93‑1 (MQ=255)
                   aGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCt                                                                      <  1:2260197/93‑1 (MQ=255)
                   aGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCt                                                                      <  1:3621159/93‑1 (MQ=255)
                    gTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTg                                                                     <  1:5019025/93‑1 (MQ=255)
                     ttACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGa                                                                    <  1:3995530/93‑1 (MQ=255)
                        cgacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACa                                                                 <  1:5357384/93‑1 (MQ=255)
                        cgacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACa                                                                 >  1:2239576/1‑93 (MQ=255)
                        cgacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACa                                                                 >  2:3733382/1‑93 (MQ=255)
                         gacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAt                                                                <  2:2862238/93‑1 (MQ=255)
                         gacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAt                                                                <  2:3151064/93‑1 (MQ=255)
                         gacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAt                                                                <  1:5276018/93‑1 (MQ=255)
                         gacgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAt                                                                >  2:5286274/1‑93 (MQ=255)
                           cgCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGt                                                              <  1:611705/93‑1 (MQ=255)
                            gCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTc                                                             <  2:2618164/93‑1 (MQ=255)
                            gCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTc                                                             <  1:1484570/93‑1 (MQ=255)
                            gCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTc                                                             >  2:4083273/1‑93 (MQ=255)
                             cTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCt                                                            >  2:6434394/1‑93 (MQ=255)
                              tGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCtt                                                           >  2:2929749/1‑93 (MQ=255)
                              tGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCtt                                                           <  1:3717359/93‑1 (MQ=255)
                              tGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCtt                                                           <  2:1152762/93‑1 (MQ=255)
                               gCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTa                                                          >  1:5692752/1‑93 (MQ=255)
                                 cAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAtt                                                        <  2:2164543/93‑1 (MQ=255)
                                 cAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTAtt                                                        <  1:5200386/93‑1 (MQ=255)
                                   gTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGc                                                      <  2:1958318/93‑1 (MQ=255)
                                    tCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCg                                                     >  1:1328986/1‑93 (MQ=255)
                                    tCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCg                                                     <  2:3695657/93‑1 (MQ=255)
                                    tCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCg                                                     <  2:3889751/93‑1 (MQ=255)
                                    tCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCg                                                     >  1:5631998/1‑93 (MQ=255)
                                     cAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGt                                                    <  2:4698088/93‑1 (MQ=255)
                                      aGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTg                                                   >  1:1062030/1‑93 (MQ=255)
                                      aGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTg                                                   <  1:6178064/93‑1 (MQ=255)
                                      aGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTg                                                   >  1:482387/1‑93 (MQ=255)
                                         aaaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAAt                                                >  2:4535567/1‑93 (MQ=255)
                                          aaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATg                                               >  2:5403921/1‑93 (MQ=255)
                                          aaTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATg                                               >  1:4738803/1‑93 (MQ=255)
                                           aTTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGt                                              <  2:4442647/93‑1 (MQ=255)
                                            ttGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtt                                             >  1:1115801/1‑93 (MQ=255)
                                            ttGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtt                                             <  1:3552903/93‑1 (MQ=255)
                                                cAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttctt                                         <  2:2724729/93‑1 (MQ=255)
                                                 aGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttcttt                                        <  1:3381780/93‑1 (MQ=255)
                                                 aGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttcttt                                        >  1:3870886/1‑93 (MQ=255)
                                                 aGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttcttt                                        <  2:335296/93‑1 (MQ=255)
                                                 aGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttcttt                                        >  2:5613616/1‑93 (MQ=255)
                                                  gCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGtttctttc                                       <  1:3406674/93‑1 (MQ=255)
                                                    aaGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAt                                     <  2:3900703/93‑1 (MQ=255)
                                                     aGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAtt                                    >  1:1294669/1‑93 (MQ=255)
                                                      gAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAttt                                   >  2:1503277/1‑93 (MQ=255)
                                                      gAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCAttt                                   <  1:3752940/93‑1 (MQ=255)
                                                       aaTTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTg                                  >  1:5918790/1‑93 (MQ=255)
                                                       aaTTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTg                                  <  1:2601491/93‑1 (MQ=255)
                                                        aTTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGa                                 >  1:4657718/1‑93 (MQ=255)
                                                            aaaGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACt                             <  2:5194734/93‑1 (MQ=255)
                                                            aaaGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACt                             <  1:4294377/93‑1 (MQ=255)
                                                             aaGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTg                            <  1:2758828/93‑1 (MQ=255)
                                                             aaGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTg                            >  1:4219186/1‑93 (MQ=255)
                                                              aGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAACCCCGGCCCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGc                           <  1:1897975/93‑1 (MQ=255)
                                                              aGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGc                           >  1:3362048/1‑93 (MQ=255)
                                                              aGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGc                           >  2:4840594/1‑93 (MQ=255)
                                                                 gATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAtt                        >  1:2176273/1‑93 (MQ=255)
                                                                  aTAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAttt                       >  2:4064695/1‑93 (MQ=255)
                                                                  aTAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAttt                       >  2:4637762/1‑93 (MQ=255)
                                                                  aTAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAttt                       >  1:4954013/1‑93 (MQ=255)
                                                                   tAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTc                      <  1:1594983/93‑1 (MQ=255)
                                                                   tAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTc                      >  1:2325291/1‑93 (MQ=255)
                                                                     aaTACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTccc                    <  1:4003085/93‑1 (MQ=255)
                                                                     aaTACACACTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTccc                    <  1:5087562/93‑1 (MQ=255)
                                                                      aTACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCa                   >  1:693071/1‑93 (MQ=255)
                                                                      aTACACATTAAAACAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCa                   >  1:789707/1‑93 (MQ=255)
                                                                       tACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCag                  <  1:6424000/93‑1 (MQ=255)
                                                                        acacATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCaga                 <  1:2024801/93‑1 (MQ=255)
                                                                        acacATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCaga                 <  2:4286611/93‑1 (MQ=255)
                                                                        acacATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCaga                 <  2:3486369/93‑1 (MQ=255)
                                                                          acaTTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGt               <  1:3795610/93‑1 (MQ=255)
                                                                            cttACAATAGTGATCCCAGGAATGAACCCCGGACCAGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTc             <  1:3165691/92‑1 (MQ=255)
                                                                                 aaTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTaa        <  2:615027/93‑1 (MQ=255)
                                                                                  aTAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAg       <  1:1241047/93‑1 (MQ=255)
                                                                                    aGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCg     >  2:1680402/1‑93 (MQ=255)
                                                                                    aGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCg     >  2:5635880/1‑93 (MQ=255)
                                                                                    aGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCg     <  1:2381486/93‑1 (MQ=255)
                                                                                     gTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGa    >  1:3062630/1‑93 (MQ=255)
                                                                                     gTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGa    >  1:2917130/1‑93 (MQ=255)
                                                                                     gTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGa    >  2:5945468/1‑93 (MQ=255)
                                                                                     gTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGa    >  1:2464301/1‑93 (MQ=255)
                                                                                       gAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGaaa  <  1:2839989/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAA  >  NC_000913/715049‑715228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAATAA  >  NC_000913/715046‑715231
                                                                                             |                                                                                            
ATGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGC                                                                                              >  SRR4302534.3850650/1‑94 (MQ=60)
 TGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCC                                                                                             <  SRR4302534.2112149/94‑1 (MQ=60)
  GATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCC                                                                                            <  SRR4302534.6083264/94‑1 (MQ=60)
   ATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCG                                                                                           >  SRR4302534.2377496/1‑94 (MQ=60)
    TGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGG                                                                                          >  SRR4302534.1861288/1‑94 (MQ=60)
      CATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGA                                                                                        <  SRR4302534.5959573/94‑1 (MQ=60)
         GTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATG                                                                                     >  SRR4302534.3694150/1‑94 (MQ=60)
          TCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGA                                                                                    <  SRR4302534.4977627/94‑1 (MQ=60)
               ATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCC                                                                               >  SRR4302534.3543272/1‑94 (MQ=60)
                TTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGATTGAAACCCG                                                                              <  SRR4302534.6454434/94‑1 (MQ=60)
                TTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCG                                                                              <  SRR4302534.4763451/94‑1 (MQ=60)
                GTATTGAGTTACGACGCGGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCG                                                                              <  SRR4302534.3850139/94‑1 (MQ=60)
                  ATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGA                                                                            >  SRR4302534.4517141/1‑94 (MQ=60)
                     GAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCT                                                                         >  SRR4302534.5112098/1‑94 (MQ=60)
                     GAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCT                                                                         <  SRR4302534.612728/94‑1 (MQ=60)
                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                        <  SRR4302534.412802/94‑1 (MQ=60)
                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                        <  SRR4302534.1989074/94‑1 (MQ=60)
                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                        <  SRR4302534.2320121/94‑1 (MQ=60)
                      AGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTG                                                                        <  SRR4302534.3718511/94‑1 (MQ=60)
                       GTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGA                                                                       <  SRR4302534.3721214/94‑1 (MQ=60)
                       GTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGA                                                                       <  SRR4302534.5154634/94‑1 (MQ=60)
                        TTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAA                                                                      <  SRR4302534.4102493/94‑1 (MQ=60)
                        TTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAA                                                                      >  SRR4302534.544457/1‑94 (MQ=60)
                          ACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACA                                                                    <  SRR4302534.445474/94‑1 (MQ=60)
                          ACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACA                                                                    >  SRR4302534.2298925/1‑94 (MQ=60)
                           CGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAT                                                                   <  SRR4302534.5501802/94‑1 (MQ=60)
                           CGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAT                                                                   <  SRR4302534.3909529/94‑1 (MQ=60)
                           CGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACAT                                                                   <  SRR4302534.5172686/94‑1 (MQ=60)
                            GACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATG                                                                  <  SRR4302534.5418488/94‑1 (MQ=60)
                              CGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTC                                                                <  SRR4302534.3666012/94‑1 (MQ=60)
                              CGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTC                                                                <  SRR4302534.626570/94‑1 (MQ=60)
                               GCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCT                                                               <  SRR4302534.3717953/94‑1 (MQ=60)
                               GCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCT                                                               <  SRR4302534.1523628/94‑1 (MQ=60)
                                 TGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTA                                                             >  SRR4302534.5846941/1‑94 (MQ=60)
                                 TGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTA                                                             <  SRR4302534.3817297/94‑1 (MQ=60)
                                   CCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATT                                                           <  SRR4302534.1750421/94‑1 (MQ=60)
                                    CAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTG                                                          <  SRR4302534.5340680/94‑1 (MQ=60)
                                     AGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGC                                                         >  SRR4302534.5567231/1‑94 (MQ=60)
                                      GTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCG                                                        >  SRR4302534.5784429/1‑94 (MQ=60)
                                      GTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCG                                                        >  SRR4302534.1364022/1‑94 (MQ=60)
                                        CAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTG                                                      >  SRR4302534.494479/1‑94 (MQ=60)
                                        CAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTG                                                      >  SRR4302534.1089555/1‑94 (MQ=60)
                                         AGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGA                                                     <  SRR4302534.6346187/94‑1 (MQ=60)
                                         AGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGA                                                     <  SRR4302534.6346186/94‑1 (MQ=60)
                                          GAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAA                                                    >  SRR4302534.386030/1‑94 (MQ=60)
                                          GAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAA                                                    >  SRR4302534.2242246/1‑94 (MQ=60)
                                            AAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATG                                                  >  SRR4302534.4867457/1‑94 (MQ=60)
                                             AATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGT                                                 >  SRR4302534.1342297/1‑94 (MQ=60)
                                             AATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGT                                                 >  SRR4302534.407416/1‑94 (MQ=60)
                                              ATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTT                                                >  SRR4302534.1144932/1‑94 (MQ=60)
                                              ATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTT                                                >  SRR4302534.2502817/1‑94 (MQ=60)
                                               TTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTT                                               <  SRR4302534.3648449/94‑1 (MQ=60)
                                               TTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTT                                               <  SRR4302534.6084595/94‑1 (MQ=60)
                                                TGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTC                                              <  SRR4302534.2912647/94‑1 (MQ=60)
                                                 GCCAGCAAGAATTGAAAGCGATAAATACTCAATAAAATCGTCAGCCCCGGAATGAAACCCGCTCCTCAACATGTCTTATCGCCTGAATGTTTCC                                             <  SRR4302534.723278/94‑1 (MQ=30)
                                                 GCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCT                                             <  SRR4302534.3532135/94‑1 (MQ=60)
                                                  CCAGCAAGAATTGAAAGCGATAAATACACATTACAATAACGAGCTCGGGAATGACACCCGGACCTGAACAAGTCTTATTGCGTGAAGGTTTCTT                                            >  SRR4302534.5872137/1‑94 (MQ=60)
                                                   CAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTT                                           >  SRR4302534.3974827/1‑94 (MQ=60)
                                                    AGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTC                                          <  SRR4302534.3472437/94‑1 (MQ=60)
                                                     GCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCA                                         <  SRR4302534.3498160/94‑1 (MQ=60)
                                                       AAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATT                                       <  SRR4302534.1404776/94‑1 (MQ=60)
                                                       AAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATT                                       >  SRR4302534.4829325/1‑94 (MQ=60)
                                                       AAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATT                                       >  SRR4302534.1328761/1‑94 (MQ=60)
                                                        AGAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTT                                      >  SRR4302534.2969297/1‑94 (MQ=60)
                                                         GAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTG                                     >  SRR4302534.6079500/1‑94 (MQ=60)
                                                         GAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTG                                     <  SRR4302534.4340669/94‑1 (MQ=60)
                                                         GAATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTG                                     <  SRR4302534.3853726/94‑1 (MQ=60)
                                                          AATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAACCCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGA                                    <  SRR4302534.157252/94‑1 (MQ=60)
                                                          AATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGA                                    <  SRR4302534.2670315/94‑1 (MQ=60)
                                                          AATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGA                                    >  SRR4302534.4784181/1‑94 (MQ=60)
                                                          AATTGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGA                                    >  SRR4302534.5860516/1‑94 (MQ=60)
                                                             TGAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATAT                                 >  SRR4302534.2653852/1‑94 (MQ=60)
                                                              GAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACT                                >  SRR4302534.1205993/1‑94 (MQ=60)
                                                              GAAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACT                                <  SRR4302534.4928259/94‑1 (MQ=60)
                                                               AAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTG                               >  SRR4302534.4332939/1‑94 (MQ=60)
                                                               AAAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTG                               <  SRR4302534.4410740/94‑1 (MQ=60)
                                                                AAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGC                              <  SRR4302534.2831493/94‑1 (MQ=60)
                                                                AAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGC                              >  SRR4302534.3452100/1‑94 (MQ=60)
                                                                AAGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGC                              >  SRR4302534.2416605/1‑94 (MQ=60)
                                                                 AGCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAACCCCGGCCCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCA                             <  SRR4302534.1947473/94‑1 (MQ=60)
                                                                  GCGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCAT                            <  SRR4302534.217817/94‑1 (MQ=60)
                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                           <  SRR4302534.3153752/94‑1 (MQ=60)
                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                           <  SRR4302534.3308811/94‑1 (MQ=60)
                                                                   CGATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATT                           >  SRR4302534.2233769/1‑94 (MQ=60)
                                                                    GATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTT                          >  SRR4302534.5088189/1‑94 (MQ=60)
                                                                     ATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTC                         <  SRR4302534.835601/94‑1 (MQ=60)
                                                                     ATAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTC                         >  SRR4302534.2386989/1‑94 (MQ=60)
                                                                      TAAATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCC                        <  SRR4302534.1636670/94‑1 (MQ=60)
                                                                        AATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                      <  SRR4302534.4110260/94‑1 (MQ=60)
                                                                        AATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                      <  SRR4302534.3558628/94‑1 (MQ=60)
                                                                        AATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                      >  SRR4302534.710045/1‑94 (MQ=60)
                                                                        AATACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                      >  SRR4302534.1308402/1‑94 (MQ=60)
                                                                        AATACACATTAAAACAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                      >  SRR4302534.809482/1‑94 (MQ=60)
                                                                        AATACACACTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCA                      <  SRR4302534.5224877/94‑1 (MQ=60)
                                                                          TACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGA                    <  SRR4302534.6597247/94‑1 (MQ=60)
                                                                           ACACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAG                   <  SRR4302534.2077769/94‑1 (MQ=60)
                                                                             ACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTT                 <  SRR4302534.5808695/94‑1 (MQ=60)
                                                                             ACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTT                 >  SRR4302534.34921/1‑94 (MQ=60)
                                                                             ACATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTT                 <  SRR4302534.3897521/94‑1 (MQ=60)
                                                                              CATTAAAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTC                >  SRR4302534.1888859/1‑94 (MQ=60)
                                                                                   AAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAA           <  SRR4302534.5360171/94‑1 (MQ=60)
                                                                                   AAATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAA           <  SRR4302534.4783706/94‑1 (MQ=60)
                                                                                    AATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAG          <  SRR4302534.2994655/94‑1 (MQ=60)
                                                                                     ATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGC         <  SRR4302534.1273751/94‑1 (MQ=60)
                                                                                     ATAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGC         >  SRR4302534.6066664/1‑94 (MQ=60)
                                                                                      TAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCG        <  SRR4302534.774874/94‑1 (MQ=60)
                                                                                      TAGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCG        >  SRR4302534.2764130/1‑94 (MQ=60)
                                                                                       AGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGA       >  SRR4302534.2993675/1‑94 (MQ=60)
                                                                                       AGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGA       >  SRR4302534.2529767/1‑94 (MQ=60)
                                                                                       AGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGA       >  SRR4302534.3143006/1‑94 (MQ=60)
                                                                                       AGTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGA       <  SRR4302534.2444763/94‑1 (MQ=60)
                                                                                       AGTGAGCCCGCGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGA       <  SRR4302534.6159694/94‑1 (MQ=60)
                                                                                        GTGAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAA      <  SRR4302534.4758979/94‑1 (MQ=60)
                                                                                          GAGCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAAT    <  SRR4302534.2914594/94‑1 (MQ=60)
                                                                                            GCCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAATAA  <  SRR4302534.1621539/94‑1 (MQ=60)
                                                                                             |                                                                                            
ATGATGCATGTCGGGATTATTGAGTTACGACGCTGCCAGTCAGAAAATTGCCAGCAAGAATTGAAAGCGATAAATACACATTAAAATAGTGAGTCCGGGAATGAAACCCGGACCTGAACATGTCTTATTGCGTGAATGTTTCTTTCATTTGATACTGCATTTCCCAGAGTTCAGTAAGCGAAATAA  >  NC_000913/715046‑715231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑