mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 144 | A→G | intergenic (–/‑46) | – / → thrL | –/thr operon leader peptide |
| RA | 6,610 | G→A | R450R (CGC→CGT) | yaaJ ← | inner membrane transport protein |
| RA | 11,000 | T→C | E119E (GAA→GAG) C92C (TGT→TGC) |
b0011 ← htgA → |
putative oxidoreductase HtgA |
| RA | 28,729 | C→T | A119V (GCC→GTC) | dapB → | dihydrodipicolinate reductase |
| RA | 30,594 | C→T | A315V (GCG→GTG) | carA → | carbamoyl‑phosphate synthetase |
| RA | 49,165 | T→C | V466A (GTG→GCG) | kefC → | K+ efflux antiporter glutathione‑regulated |
| RA | 66,528 | T→C | Q8R (CAG→CGG) | araD ← | L‑ribulose‑5‑phosphate 4‑epimerase |
| MC JC | 66,533 | 3540 bp→27 bp | [araD]–araB | [araD], araA, araB | |
| RA | 70,289 | G→T | intergenic (‑241/‑98) | araB ← / → araC | L‑ribulokinase/transcriptional regulator for ara operon |
| RA | 78,003 | A→C | E128A (GAG→GCG) | yabM → | putative transport protein |
| RA | 83,095 | A→G | R145R (CGT→CGC) | leuA ← | 2‑isopropylmalate synthase |
| RA | 87,311 | (G)5→6 | coding (1682/1725 nt) | ilvI → | acetolactate synthase isozyme III large subunit |
| RA | 107,212 | A→G | D219G (GAC→GGC) | lpxC → | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| RA | 111,615 | T→C | intergenic (+182/+34) | mutT → / ← yacG | 7,8‑dihydro‑8‑oxoguanine‑triphosphatase/hypothetical protein |
| RA | 138,226 | A→G | S382G (AGC→GGC) | yacK → | hypothetical protein |
| RA | 138,888 | T→C | T780A (ACG→GCG) | gcd ← | glucose dehydrogenase |
| RA | 147,141 | A→G | G58G (GGA→GGG) | yadD → | hypothetical protein |
| RA | 148,799 | G→A | intergenic (‑4/+8) | panC ← / ← panB | pantothenate synthetase/3‑methyl‑2‑oxobutanoate hydroxymethyltransferase |
| RA | 156,827 | A→G | G19G (GGT→GGC) | yadN ← | putative fimbrial‑like protein |
| RA | 159,762 | A→G | R117R (CGT→CGC) | yadB ← | putative tRNA synthetase |
| RA | 171,718 | C→T | P86L (CCG→CTG) | fhuB → | FhuB |
| RA | 182,747 | A→G | T95T (ACA→ACG) | yaeG → | hypothetical protein |
| RA | 196,422 | A→G | D213G (GAC→GGC) | cdsA → | CDP‑diglyceride synthetase |
| RA | 202,345 | T→C | V82A (GTA→GCA) | fabZ → | (3R)‑hydroxymyristol acyl carrier protein dehydratase |
| RA | 231,829 | T→C | G236G (GGT→GGC) | yafD → | hypothetical protein |
| RA | 235,988 | T→C | V5V (GTA→GTG) | rnhA ← | RNase HI |
| RA | 241,745 | A→G | V532A (GTG→GCG) | yafH ← | putative acyl‑CoA dehydrogenase |
| RA | 253,831 | T→C | Y44H (TAT→CAT) | prfH → | putative peptide chain release factor |
| RA | 254,298 | T→C | T473T (ACA→ACG) | pepD ← | aminoacyl‑histidine dipeptidase |
| RA | 256,955 | T→C | D143D (GAT→GAC) | yafA → | hypothetical protein |
| RA | 269,425 | A→G | intergenic (‑19/‑41) | perR ← / → yi91a | putative transcriptional regulator LYSR‑type/hypothetical protein |
| RA | 272,747 | T→C | L221P (CTA→CCA) | ykfC → | hypothetical protein |
| RA | 276,473 | T→C | L179L (TTG→CTG) | yagD → | YagD |
| RA | 283,609 | A→G | E395E (GAA→GAG) | yagF → | putative dehydratase |
| RA | 296,697 | A→G | F107L (TTC→CTC) | yagP ← | putative transcriptional regulator LYSR‑type |
| RA | 307,659 | T→C | T300A (ACC→GCC) | yagX ← | hypothetical protein |
| RA | 318,936 | C→T | G106D (GGC→GAC) | ykgC ← | putative oxidoreductase |
| RA | 320,122 | T→C | A224A (GCT→GCC) | ykgD → | putative ARAC‑type regulatory protein |
| RA | 323,407 | A→G | G142G (GGA→GGG) | ykgG → | putative transporter |
| RA | 338,761 | G→A | V405I (GTC→ATC) | yahG → | hypothetical protein |
| RA | 363,169 | A→G | R787R (CGT→CGC) | lacZ ← | beta‑D‑galactosidase |
| RA | 368,911 | G→A | V359V (GTG→GTA) | mhpA → | 3‑(3‑hydroxyphenyl)propionate hydroxylase |
| RA | 376,616 | A→G | intergenic (+81/+143) | yaiL → / ← yaiM | nucleoprotein/polynucleotide‑associated enzyme/putative esterase |
| JC | 379,244 | (G)10→7 | intergenic (‑118/+47) | yaiN ← / ← yaiO | putative alpha helix chain/hypothetical protein |
| RA | 379,246 | (G)10→11 | intergenic (‑120/+47) | yaiN ← / ← yaiO | putative alpha helix chain/hypothetical protein |
| RA | 394,595 | T→C | D306G (GAT→GGT) | yaiH ← | hypothetical protein |
| RA | 400,205 | A→G | intergenic (‑58/‑405) | ddlA ← / → yaiB | D‑alanine‑D‑alanine ligase A/hypothetical protein |
| RA | 418,805 | A→G | intergenic (+397/‑10) | phoR → / → brnQ | positive and negative sensor protein for pho regulon/branched chain amino acid transport system II carrier protein |
| RA | 434,599 | T→C | V80A (GTA→GCA) | nusB → | transcription termination |
| RA | 434,687 | A→G | E109E (GAA→GAG) | nusB → | transcription termination |
| RA | 440,252 | A→G | L25P (CTG→CCG) | ispA ← | geranyltranstransferase |
| RA | 440,417 | C→T | A51T (GCC→ACC) | xseB ← | exonuclease VII small subunit |
| RA | 459,573 | A→G | I488V (ATT→GTT) | lon → | ATP‑dependent protease La |
| RA | 484,107 | A→G | L246P (CTG→CCG) | acrA ← | acridine efflux pump |
| RA | 502,653 | C→T | intergenic (‑191/+47) | ybaL ← / ← fsr | putative transport protein/fosmidomycin resistance protein |
| RA | 509,606 | (T)6→5 | coding (998/2505 nt) | ybaR ← | putative ATPase |
| RA | 518,231 | T→C | K48R (AAA→AGA) | ybbO ← | putative oxidoreductase |
| RA | 528,763 | T→C | intergenic (+409/+106) | b0501 → / ← b0502 | hypothetical protein/hypothetical protein |
| RA | 531,406 | C→T | A14T (GCT→ACT) | ybbS ← | putative transcriptional regulator LYSR‑type |
| RA | 536,980 | A→G | I87M (ATA→ATG) N42D (AAC→GAC) |
ybbV → ybbW → |
hypothetical protein putative transport protein |
| RA | 542,052 | A→G | Q314R (CAG→CGG) | ybbZ → | hypothetical protein |
| RA | 547,694 | A→G | E38E (GAA→GAG) | b4507 → | hypothetical protein |
| RA | 547,835 | +G | coding (255/261 nt) | b4507 → | hypothetical protein |
| RA | 552,300 | C→T | A8A (GCG→GCA) | purE ← | phosphoribosylaminoimidazole carboxylase |
| RA | 556,636 | A→G | V110A (GTG→GCG) | folD ← | 5,10‑methylene‑tetrahydrofolate dehydrogenase |
| RA | 562,546 | A→G | intergenic (+4/‑7) | sfmH → / → sfmF | involved in fimbrial asembly/putative fimbrial‑like protein |
| RA | 577,681 | (C)6→7 | coding (352/462 nt) | ybcT → | endopeptidase‑like protein |
| RA | 578,027 | T→C | A30A (GCA→GCG) | ybcU ← | Bor‑like protein |
| RA | 612,751 | T→C | A238A (GCT→GCC) | fes → | enterochelin esterase |
| RA | 618,600 | A→G | H375R (CAC→CGC) | fepE → | FepE |
| RA | 621,553 | A→G | S11G (AGC→GGC) | ybdA → | putative transport |
| RA | 624,133 | T→C | V9A (GTA→GCA) | entC → | isochorismate hydroxymutase 2 |
| RA | 638,137 | A→G | intergenic (‑281/‑31) | dsbG ← / → ahpC | thiol:disulfide interchange protein/alkyl hydroperoxide reductase C22 subunit |
| RA | 683,225 | A→G | H137H (CAT→CAC) | ybeK ← | putative tRNA synthetase |
| RA | 697,801 | A→G | D200D (GAT→GAC) | asnB ← | asparagine synthetase B |
| RA | 704,130 | A→G | I322V (ATC→GTC) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
| RA | 704,236 | T→C | L357S (TTG→TCG) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
| RA | 704,311 | A→G | N382S (AAC→AGC) | nagE → | PTS system, N‑acetylglucosamine‑specific enzyme IIABC |
| RA | 708,421 | G→A | G289S (GGC→AGC) | ybfM → | hypothetical protein |
| RA | 709,321 | A→G | I103M (ATA→ATG) | ybfN → | hypothetical protein |
| RA | 715,139 | T→C | intergenic (+10/+31) | ybfP → / ← ybfG | putative pectinase/hypothetical protein |
| RA | 719,820 | A→G | L5L (TTA→TTG) | ybfK → | hypothetical protein |
| RA | 729,698 | A→G | H298R (CAC→CGC) | rhsC → | RhsC |
| RA | 765,778 | C→T | A191V (GCC→GTC) | hrsA → | PTS system fructose specific IIABC component |
| RA | 791,797 | T→C | G405G (GGA→GGG) | modF ← | ModF |
| RA | 831,133 | T→C | S347P (TCG→CCG) | rhlE → | putative ATP‑dependent RNA helicase |
| RA | 844,809 | A→G | intergenic (‑106/+155) | ybiO ← / ← glnQ | putative transport protein/ATP‑binding component of glutamine high‑affinity transport system |
| RA | 878,307 | A→G | T115A (ACT→GCT) | yliI → | putative dehydrogenase |
| RA | 888,260 | A→G | D261D (GAT→GAC) | b0847 ← | putative transport protein |
| RA | 899,581 | A→T | I73N (ATC→AAC) | artJ ← | arginine 3rd transport system periplasmic binding protein |
| RA | 905,792 | A→G | V74A (GTG→GCG) | b0868 ← | putative nucleotide di‑P‑sugar epimerase or dehydratase |
| RA | 914,422 | A→G | intergenic (‑294/+153) | ybjE ← / ← aqpZ | putative surface protein/transmembrane water channel |
| RA | 914,564 | T→C | intergenic (‑436/+11) | ybjE ← / ← aqpZ | putative surface protein/transmembrane water channel |
| RA | 934,731 | A→G | Q762R (CAG→CGG) | ftsK → | cell division protein |
| RA | 946,689 | A→G | T144A (ACG→GCG) | b0899 → | putative transport |
| RA | 961,423 | A→G | D69G (GAC→GGC) | rpsA → | 30S ribosomal subunit protein S1 |
| RA | 962,413 | A→G | N399S (AAC→AGC) | rpsA → | 30S ribosomal subunit protein S1 |
| RA | 969,158 | C→T | R183C (CGC→TGC) | ycaQ → | hypothetical protein |
| RA | 981,066 | A→T | D266V (GAC→GTC) | ycbB → | putative amidase |
| RA | 981,566 | C→T | R433C (CGC→TGC) | ycbB → | putative amidase |
| RA | 1,003,383 | (G)7→8 | coding (184/681 nt) | ycbF → | putative chaperone |
| RA | 1,015,850 | T→C | Q558R (CAG→CGG) | b0955 ← | putative ATP‑dependent protease |
| RA | 1,016,180 | A→G | I448T (ATA→ACA) | b0955 ← | putative ATP‑dependent protease |
| RA | 1,019,358 | T→C | intergenic (‑82/+275) | ompA ← / ← sulA | outer membrane protein 3a/suppressor of lon |
| RA | 1,032,328 | A→G | T323A (ACC→GCC) | hyaA → | hydrogenase‑1 small subunit |
| RA | 1,038,386 | T→C | L475P (CTG→CCG) | appC → | putative third cytochrome oxidase subunit I |
| RA | 1,051,163 | Δ1 bp | coding (94/231 nt) | sfa → | Sfa |
| RA | 1,053,820 | T→C | T518A (ACC→GCC) | torS ← | TorS |
| RA | 1,056,041 | A→G | E186E (GAA→GAG) | torT → | TorT |
| RA | 1,064,328 | A→G | N357S (AAT→AGT) | yccE → | hypothetical protein |
| RA | 1,065,252 | T→C | F149L (TTT→CTT) | agp → | periplasmic glucose‑1‑phosphatase |
| RA | 1,066,017 | T→C | F404L (TTT→CTT) | agp → | periplasmic glucose‑1‑phosphatase |
| RA | 1,074,187 | T→C | T1307A (ACC→GCC) | putA ← | proline dehydrogenase |
| RA | 1,086,330 | T→C | Y247C (TAC→TGC) | ycdQ ← | hypothetical protein |
| RA | 1,090,676 | A→G | R279R (CGT→CGC) | ycdS ← | putative outer membrane protein |
| RA | 1,098,156 | A→G | T19A (ACA→GCA) | ycdX → | hypothetical protein |
| RA | 1,119,304 | T→C | N169S (AAC→AGC) | solA ← | sarcosine oxidase‑like protein |
| RA | 1,141,015 | T→C | Q859R (CAG→CGG) | rne ← | RNase E |
| RA | 1,142,917 | T→C | D225G (GAC→GGC) | rne ← | RNase E |
| RA | 1,143,101 | T→C | M164V (ATG→GTG) | rne ← | RNase E |
| RA | 1,154,920 | C→T | P192S (CCG→TCG) | tmk → | thymidylate kinase |
| RA | 1,155,780 | A→G | T266A (ACC→GCC) | holB → | DNA polymerase III delta prime subunit |
| RA | 1,156,390 | A→G | T131A (ACC→GCC) | ycfH → | hypothetical protein |
| RA | 1,158,718 | T→C | Q686R (CAG→CGG) | fhuE ← | outer membrane receptor for ferric iron uptake |
| RA | 1,175,607 | A→G | S320G (AGC→GGC) | ycfU → | hypothetical protein |
| RA | 1,192,497 | A→G | L167P (CTG→CCG) | ycfB ← | hypothetical protein |
| RA | 1,199,211 | T→C | V273V (GTA→GTG) | intE ← | prophage e14 integrase |
| RA | 1,202,871 | A→G | E131E (GAA→GAG) | ymfL → | hypothetical protein |
| RA | 1,207,165 | (G)7→8 | coding (442/630 nt) | ycfK → | hypothetical protein |
| RA | 1,210,786 | A→G | intergenic (+384/+117) | mcrA → / ← ycgW | McrA/hypothetical protein |
| RA | 1,212,474 | A→G | intergenic (‑144/+77) | ycgX ← / ← ycgE | hypothetical protein/putative transcriptional regulator |
| RA | 1,235,692 | T→C | Q258R (CAG→CGG) | ycgB ← | putative sporulation protein |
| RA | 1,238,083 | A→G | A430A (GCA→GCG) | dadA → | D‑amino acid dehydrogenase subunit |
| RA | 1,252,715 | A→G | S821P (TCC→CCC) | b1202 ← | putative adhesion and penetration protein |
| RA | 1,302,782 | A→G | N2S (AAC→AGC) | oppD → | OppD |
| RA | 1,329,903 | A→G | S278G (AGT→GGT) | topA → | DNA topoisomerase type I omega protein |
| RA | 1,330,060 | A→G | D330G (GAC→GGC) | topA → | DNA topoisomerase type I omega protein |
| RA | 1,335,418 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydrase 1 |
| RA | 1,342,604 | G→A | A10A (GCC→GCT) | b4523 ← | hypothetical protein |
| RA | 1,348,410 | A→G | R218R (CGT→CGC) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase (NADH) |
| RA | 1,354,431 | T→C | D235G (GAT→GGT) | sapA ← | SapA |
| RA | 1,358,270 | G→A | G221G (GGC→GGT) | b1297 ← | putative glutamine synthetase |
| RA | 1,372,245 | A→G | S44S (TCA→TCG) | ycjP → | putative transport system permease protein |
| RA | 1,383,611 | A→G | Q26R (CAG→CGG) | ycjF → | hypothetical protein |
| RA | 1,391,027 | A→G | intergenic (+113/‑203) | ycjZ → / → b1329 | putative transcriptional regulator LYSR‑type/putative transport periplasmic protein |
| RA | 1,396,204 | T→C | Q148R (CAG→CGG) | ydaA ← | hypothetical protein |
| RA | 1,397,365 | A→G | G62G (GGT→GGC) | fnr ← | Fnr |
| RA | 1,408,072 | A→G | T180A (ACG→GCG) | dbpA → | ATP‑dependent RNA helicase |
| RA | 1,415,996 | (T)6→7 | coding (37/171 nt) | ydaE ← | hypothetical protein |
| RA | 1,442,757 | C→T | D561D (GAC→GAT) | ydbH → | hypothetical protein |
| RA | 1,445,328 | A→G | intergenic (‑21/‑215) | feaR ← / → feaB | FeaR/phenylacetaldehyde dehydrogenase |
| RA | 1,456,536 | A→G | S83S (TCA→TCG) | b1394 → | hypothetical protein |
| RA | 1,457,617 | T→C | P180P (CCT→CCC) | ydbU → | hypothetical protein |
| RA | 1,460,324 | A→G | D59G (GAC→GGC) | b1398 → | hypothetical protein |
| RA | 1,492,778 | A→G | G153G (GGT→GGC) | b1422 ← | putative transcriptional regulator LYSR‑type |
| RA | 1,503,894 | T→C | T71A (ACC→GCC) | b1433 ← | putative membrane transport protein |
| RA | 1,520,878 | A→G | V71A (GTG→GCG) | b1451 ← | putative outer membrane receptor for iron transport |
| RA | 1,520,926 | A→G | M55T (ATG→ACG) | b1451 ← | putative outer membrane receptor for iron transport |
| RA | 1,521,583 | A→T | I85F (ATC→TTC) | b1452 → | putative receptor |
| RA | 1,533,898 | A→G | intergenic (‑16/+63) | yddE ← / ← narV | hypothetical protein/cryptic nitrate reductase 2 gamma subunit |
| RA | 1,538,045 | G→A | P857L (CCG→CTG) | narZ ← | cryptic nitrate reductase 2 alpha subunit |
| RA | 1,545,666 | A→G | D81G (GAC→GGC) D81G (GAC→GGC) |
b4525 → fdnG → |
hypothetical protein formate dehydrogenase‑N, nitrate‑inducible, alpha subunit |
| RA | 1,548,911 | T→C | C143R (TGT→CGT) | fdnH → | formate dehydrogenase‑N, nitrate‑inducible, iron‑sulfur beta subunit |
| RA | 1,571,055 | T→C | L724L (TTA→TTG) | pqqL ← | putative peptidase |
| RA | 1,603,543 | T→C | F157L (TTT→CTT) | b1516 → | putative LACI‑type transcriptional regulator |
| RA | 1,605,226 | G→A | T68T (ACG→ACA) | b1518 → | hypothetical protein |
| RA | 1,607,710 | A→G | L332P (CTT→CCT) | uxaB ← | altronate oxidoreductase |
| RA | 1,608,034 | A→G | V224A (GTG→GCG) | uxaB ← | altronate oxidoreductase |
| RA | 1,616,532 | G→A | T134I (ACC→ATC) | ydeB ← | hypothetical protein |
| RA | 1,636,465 | T→C | intergenic (‑296/+14) | b1551 ← / ← cspI | hypothetical protein/cold shock‑like protein |
| RA | 1,650,355 | T→C | F274L (TTC→CTC) | b1579 → | putative transposase |
| RA | 1,652,626 | T→C | E180E (GAA→GAG) | rspA ← | starvation sensing protein |
| RA | 1,668,733 | A→G | S337S (TCA→TCG) | ynfM → | putative transport protein |
| RA | 1,671,621 | A→G | intergenic (‑96/‑316) | b1600 ← / → b1601 | putative chaperone/putative transport protein |
| RA | 1,672,529 | T→C | V198A (GTG→GCG) | b1601 → | putative transport protein |
| RA | 1,672,622 | T→C | L229P (CTG→CCG) | b1601 → | putative transport protein |
| RA | 1,679,869 | A→G | S62S (AGT→AGC) | ydgC ← | hypothetical protein |
| RA | 1,681,154 | T→C | S83S (AGT→AGC) | rstB → | sensor histidine protein kinase |
| RA | 1,683,566 | (C)6→7 | coding (1047/1404 nt) | fumC ← | fumarase C |
| RA | 1,705,052 | T→C | V37A (GTA→GCA) | b1629 → | putative membrane protein |
| RA | 1,718,191 | A→G | T98A (ACT→GCT) | slyB → | putative outer membrane protein |
| RA | 1,722,918 | T→A | N247Y (AAC→TAC) | b1647 ← | hypothetical protein |
| RA | 1,728,403 | T→C | R431R (CGT→CGC) | lhr → | Lhr |
| RA | 1,730,968 | T→C | S1286S (AGT→AGC) | lhr → | Lhr |
| RA | 1,739,051 | A→G | M373V (ATG→GTG) | ydhC → | putative transport protein |
| RA | 1,741,574 | 2 bp→GA | coding (94‑95/1374 nt) | ydhE → | putative transport protein |
| RA | 1,755,127 | T→C | V469A (GTC→GCC) | pykF → | pyruvate kinase I |
| RA | 1,764,932 | A→G | M593T (ATG→ACG) | ydiJ ← | putative oxidase |
| RA | 1,766,232 | T→C | T160A (ACC→GCC) | ydiJ ← | putative oxidase |
| RA | 1,782,304 | A→T | D417V (GAT→GTT) | ydiD → | putative ligase/synthetase |
| RA | 1,799,252 | T→C | N448S (AAC→AGC) | thrS ← | threonine tRNA synthetase |
| RA | 1,812,482 | T→C | F198L (TTC→CTC) | katE → | catalase |
| RA | 1,846,045 | T→C | intergenic (‑13/+104) | selD ← / ← ydjA | selenophosphate synthase/hypothetical protein |
| RA | 1,848,059 | T→C | V400A (GTT→GCT) | sppA → | protease IV |
| RA | 1,852,569 | T→C | T104A (ACC→GCC) | b1770 ← | putative DEOR‑type transcriptional regulator |
| RA | 1,858,723 | C→T | A212T (GCG→ACG) | b1776 ← | putative oxidoreductase |
| RA | 1,860,370 | T→C | E28E (GAA→GAG) | yeaA ← | hypothetical protein |
| RA | 1,862,301 | T→C | V143A (GTG→GCG) | yeaD → | hypothetical protein |
| RA | 1,870,741 | T→C | V286A (GTA→GCA) | yeaJ → | hypothetical protein |
| RA | 1,885,627 | A→G | L130P (CTG→CCG) | rnd ← | RNase D |
| RA | 1,893,186 | T→C | S120P (TCA→CCA) | pabB → | p‑aminobenzoate synthetase component I |
| RA | 1,899,288 | G→A | R108W (CGG→TGG) | yoaE ← | putative transport protein |
| RA | 1,902,757 | T→C | L280P (CTG→CCG) | b1819 → | PTS enzyme IID, mannose‑specific |
| RA | 1,904,845 | T→C | E80E (GAA→GAG) | yebH ← | hypothetical protein |
| RA | 1,905,091 | T→C | intergenic (‑7/+159) | yebH ← / ← cspC | hypothetical protein/cold shock protein |
| RA | 1,930,950 | G→A | A560V (GCG→GTG) | edd ← | 6‑phosphogluconate dehydratase |
| RA | 1,933,325 | A→G | G338G (GGT→GGC) | zwf ← | glucose‑6‑phosphate dehydrogenase |
| RA | 1,934,800 | T→C | L42P (CTG→CCG) | yebK → | hypothetical protein |
| RA | 1,973,386 | A→G | S298S (AGT→AGC) | motB ← | MotB |
| MC JC | 1,976,527 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 1,980,940 | +C | coding (1/363 nt) coding (627/627 nt) |
araH ← araH ← |
ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component |
| RA | 1,981,668 | A→G | G475G (GGT→GGC) | araG ← | ATP‑binding component of high‑affinity L‑arabinose transport system |
| RA | 1,982,766 | C→T | P109P (CCG→CCA) | araG ← | ATP‑binding component of high‑affinity L‑arabinose transport system |
| RA | 1,984,089 | A→G | A21A (GCT→GCC) | araF ← | L‑arabinose‑binding periplasmic protein |
| RA | 1,995,537 | T→C | T101A (ACG→GCG) | yecC ← | putative ATP‑binding component of a transport system |
| RA | 1,995,724 | A→G | S38S (AGT→AGC) | yecC ← | putative ATP‑binding component of a transport system |
| RA | 2,006,874 | A→G | Q192R (CAG→CGG) | yedE → | putative transport system permease protein |
| RA | 2,008,480 | +A | coding (637/654 nt) | yedK → | hypothetical protein |
| RA | 2,025,451 | T→C | T202A (ACG→GCG) | b1956 ← | hypothetical protein |
| RA | 2,027,751 | (C)6→7 | coding (191/921 nt) | yedA → | putative transmembrane subunit |
| RA | 2,037,676 | (C)5→6 | coding (177/1005 nt) | b1971 → | putative reductase |
| RA | 2,043,272 | A→G | S130G (AGT→GGT) | b1978 → | hypothetical protein |
| RA | 2,049,323 | A→G | I2147V (ATC→GTC) | b1978 → | hypothetical protein |
| RA | 2,069,211 | T→C | V230A (GTA→GCA) | yeeP → | putative histone |
| RA | 2,072,030 | T→A | C824S (TGC→AGC) | b2000 → | outer membrane fluffing protein |
| RA | 2,086,377 | T→C | E258E (GAA→GAG) | b2016 ← | hypothetical protein |
| RA | 2,116,149 | A→G | V93A (GTC→GCC) | wcaK ← | putative galactokinase |
| RA | 2,132,238 | A→G | R479R (CGT→CGC) | b2060 ← | hypothetical protein |
| RA | 2,147,941 | A→G | V356A (GTC→GCC) | b2070 ← | putative chaperonin |
| RA | 2,152,717 | T→C | V276A (GTG→GCG) | b2074 → | putative membrane protein |
| RA | 2,154,032 | T→C | Y250H (TAT→CAT) | yegN → | hypothetical protein |
| RA | 2,161,324 | G→A | V143M (GTG→ATG) | baeS → | BaeS |
| RA | 2,191,374 | A→G | L272P (CTC→CCC) | b2113 ← | putative ATPase |
| RA | 2,202,504 | (T)7→6 | intergenic (+195/‑46) | yehK → / → yehL | hypothetical protein/hypothetical protein |
| RA | 2,210,202 | A→G | D5D (GAT→GAC) | yehS ← | hypothetical protein |
| RA | 2,216,746 | G→C | S252S (TCC→TCG) | yehZ ← | putative transport system permease protein |
| RA | 2,219,147 | T→C | H288R (CAC→CGC) | bglX ← | beta‑D‑glucoside glucohydrolase |
| RA | 2,223,035 | A→G | intergenic (‑136/+29) | pbpG ← / ← yohC | penicillin‑binding protein 7/hypothetical protein |
| RA | 2,234,921 | T→C | T285A (ACG→GCG) | mglC ← | MglC |
| RA | 2,239,132 | T→C | H186R (CAC→CGC) | galS ← | mgl repressor |
| RA | 2,252,917 | C→T | R97H (CGC→CAC) | yeiK ← | hypothetical protein |
| RA | 2,258,992 | C→T | A147T (GCG→ACG) | fruA ← | PTS system, fructose‑specific transport protein |
| RA | 2,265,000 | (G)5→6 | coding (736/1467 nt) | yeiQ → | putative oxidoreductase |
| RA | 2,272,980 | T→C | V261A (GTG→GCG) | yejB → | putative transport system permease protein |
| RA | 2,295,407 | C→T | G84G (GGG→GGA) | ccmA ← | ATP binding protein of heme exporter A |
| RA | 2,315,444 | G→C | A802G (GCG→GGG) | rcsC ← | RcsC |
| RA | 2,327,579 | T→C | Y80C (TAC→TGC) | b2226 ← | hypothetical protein |
| RA | 2,359,592 | T→C | T214A (ACC→GCC) | b2248 ← | putative regulator |
| RA | 2,417,173 | A→G | S8S (AGT→AGC) | b2299 ← | putative regulator |
| RA | 2,429,483 | T→C | E65E (GAA→GAG) | dedD ← | putative lipoprotein |
| RA | 2,438,697 | A→C | L310R (CTG→CGG) | fabB ← | 3‑oxoacyl‑[acyl‑carrier‑protein] synthase I |
| RA | 2,441,613 | T→C | F610F (TTT→TTC) | b2324 → | putative peptidase |
| RA | 2,453,196 | A→G | T157T (ACT→ACC) | b2339 ← | putative fimbrial‑like protein |
| RA | 2,486,394 | T→C | A278A (GCA→GCG) | yfdE ← | hypothetical protein |
| RA | 2,497,463 | T→C | V258A (GTG→GCG) | b2380 → | putative sensor protein |
| RA | 2,506,868 | A→G | P193P (CCT→CCC) | glk ← | glucokinase |
| RA | 2,551,460 | T→C | A72A (GCT→GCC) | hemF → | coproporphyrinogen III oxidase |
| RA | 2,578,097 | A→G | T148A (ACC→GCC) | tktB → | transketolase 2 isozyme |
| RA | 2,594,634 | T→C | I42V (ATA→GTA) | b2475 ← | hypothetical protein |
| RA | 2,616,953 | T→C | S410G (AGT→GGT) | uraA ← | UraA |
| RA | 2,621,256 | G→A | E65K (GAA→AAA) | ppk → | polyphosphate kinase |
| RA | 2,637,648 | T→C | V316V (GTA→GTG) | hisS ← | histidine tRNA synthetase |
| RA | 2,649,291 | +C | coding (1017/4962 nt) | b2520 ← | hypothetical protein |
| RA | 2,654,241 | A→G | R46R (CGT→CGC) | b2523 ← | putative peptidase |
| RA | 2,672,460 | G→A | H83H (CAC→CAT) | yphB ← | hypothetical protein |
| RA | 2,686,480 | T→C | Q115R (CAG→CGG) | yfhA ← | putative 2‑component transcriptional regulator |
| RA | 2,691,024 | A→T | F847Y (TTT→TAT) | purL ← | phosphoribosylformyl‑glycineamide synthetase |
| RA | 2,701,551 | T→C | Q178R (CAG→CGG) | rnc ← | RNase III |
| RA | 2,711,990 | C→T | L359L (CTG→TTG) | srmB → | ATP‑dependent RNA helicase |
| RA | 2,719,936 | A→G | Q655R (CAG→CGG) | yfiQ → | hypothetical protein |
| RA | 2,729,373 | +C | intergenic (‑195/+247) | rrsG ← / ← clpB | 16S ribosomal RNA/ClpB |
| RA | 2,744,399 | T→C | intergenic (‑194/+55) | rpsP ← / ← ffh | 30S ribosomal subunit protein S16/FFh |
| RA | 2,747,389 | Δ1 bp | coding (572/591 nt) | b4540 → | hypothetical protein |
| RA | 2,751,091 | G→C | A426P (GCT→CCT) | recN → | RecN |
| RA | 2,765,466 | (C)7→8 | intergenic (+90/‑265) | yfjO → / → b2632 | hypothetical protein/putative GTP‑binding protein |
| RA | 2,766,382 | C→G | P218A (CCC→GCC) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,423 | G→A | R231R (CGG→CGA) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,427 | 2 bp→AC | coding (697‑698/864 nt) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,473 | A→G | D248G (GAT→GGT) | b2632 → | putative GTP‑binding protein |
| RA | 2,766,475 | A→G | T249A (ACC→GCC) | b2632 → | putative GTP‑binding protein |
| RA | 2,781,020 | +G | intergenic (‑144/+65) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| RA | 2,781,027 | C→G | intergenic (‑151/+58) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| RA | 2,785,180 | Δ1 bp | coding (413/495 nt) | b2655 → | hypothetical protein |
| RA | 2,796,560 | T→C | intergenic (‑44/‑625) | stpA ← / → b2670 | StpA/hypothetical protein |
| RA | 2,796,565 | T→C | intergenic (‑49/‑620) | stpA ← / → b2670 | StpA/hypothetical protein |
| RA | 2,805,526 | A→G | D125G (GAC→GGC) | proX → | high‑affinity transport system for glycine betaine and proline |
| RA | 2,812,859 | Δ1 bp | intergenic (‑105/+46) | ygaG ← / ← gshA | hypothetical protein/gamma‑glutamate‑cysteine ligase |
| RA | 2,819,446 | G→C | G196G (GGC→GGG) | alaS ← | alanyl‑tRNA synthetase |
| RA | 2,820,144 | Δ1 bp | intergenic (+24/+18) | b4542 → / ← oraA | hypothetical protein/OraA |
| RA | 2,823,915 | A→G | K21E (AAG→GAG) | srlA → | PTS system, glucitol/sorbitol‑specific IIC component |
| RA | 2,824,797 | T→C | F128S (TTT→TCT) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| RA | 2,825,102 | T→C | F230L (TTC→CTC) | srlE → | PTS system glucitol/sorbitol‑specific enzyme IIBC component |
| RA | 2,830,091 | T→C | P99P (CCA→CCG) | ygaA ← | putative 2‑component transcriptional regulator |
| RA | 2,838,044 | +G | coding (498/1458 nt) | ascF → | PTS system enzyme IIBC |
| RA | 2,838,055 | Δ1 bp | coding (509/1458 nt) | ascF → | PTS system enzyme IIBC |
| RA | 2,842,033 | G→T | R67R (CGC→CGA) | hycG ← | hydrogenase activity |
| RA | 2,854,119 | C→T | R587C (CGC→TGC) | fhlA → | FhlA |
| RA | 2,865,091 | T→C | T162A (ACC→GCC) | rpoS ← | sigma S factor |
| RA | 2,871,779 | A→G | D79D (GAT→GAC) | cysC ← | adenosine 5'‑phosphosulfate kinase |
| RA | 2,872,811 | T→C | D211G (GAC→GGC) | cysN ← | ATP‑sulfurylase subunit 1 |
| RA | 2,877,536 | G→C | A87G (GCT→GGT) | b2755 ← | hypothetical protein |
| RA | 2,888,375 | A→G | L516P (CTT→CCT) | cysJ ← | sulfite reductase (NADPH) |
| RA | 2,896,819 | +C | coding (622/657 nt) | ygcU ← | putative oxidoreductase subunit |
| RA | 2,917,193 | A→G | V72A (GTG→GCG) | ygcX ← | putative glucarate dehydratase |
| RA | 2,923,951 | T→C | H194H (CAT→CAC) | yqcD → | hypothetical protein |
| RA | 2,926,421 | T→C | A57A (GCT→GCC) | sdaC → | putative serine transporter |
| RA | 2,929,074 | A→G | intergenic (+109/‑3) | sdaB → / → b2798 | L‑serine dehydratase/Exo |
| RA | 2,956,046 | A→C | R287R (CGT→CGG) | ptr ← | protease III |
| RA | 2,961,511 | C→T | G76G (GGG→GGA) | ppdB ← | prepilin peptidase dependent protein B |
| RA | 2,963,770 | T→C | D97G (GAC→GGC) | lgt ← | phosphatidylglycerol‑prolipoprotein diacylglyceryl transferase |
| RA | 2,967,341 | T→C | intergenic (‑342/‑343) | ygdP ← / → mutH | putative invasion protein/methyl‑directed mismatch repair |
| RA | 2,968,005 | T→A | W108R (TGG→AGG) | mutH → | methyl‑directed mismatch repair |
| RA | 2,996,557 | T→C | K112K (AAA→AAG) | b2863 ← | hypothetical protein |
| RA | 3,005,399 | +C | coding (1044/1092 nt) | ygeW → | putative carbamoyl transferase |
| RA | 3,007,730 | T→C | W316R (TGG→CGG) | ygeY → | putative deacetylase |
| RA | 3,012,261 | A→G | intergenic (‑1/+47) | b2875 ← / ← b2876 | putative synthases/hypothetical protein |
| RA | 3,013,656 | T→C | M159T (ATG→ACG) | ygfJ → | hypothetical protein |
| RA | 3,014,968 | G→A | M296I (ATG→ATA) | b2878 → | putative oxidoreductase Fe‑S subunit |
| RA | 3,025,676 | +C | coding (535/570 nt) | ygfQ → | hypothetical protein |
| RA | 3,075,220 | (T)5→6 | coding (256/357 nt) | yggP ← | hypothetical protein |
| RA | 3,077,340 | T→C | S4G (AGT→GGT) | cmtB ← | PTS system mannitol‑specific enzyme IIA component |
| RA | 3,077,514 | Δ1 bp | intergenic (‑165/+149) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| RA | 3,077,640 | +G | intergenic (‑291/+23) | cmtB ← / ← tktA | PTS system mannitol‑specific enzyme IIA component/transketolase 1 isozyme |
| RA | 3,077,905 | A→G | S584P (TCG→CCG) | tktA ← | transketolase 1 isozyme |
| RA | 3,078,245 | C→G | G470G (GGG→GGC) | tktA ← | transketolase 1 isozyme |
| RA | 3,082,631 | C→T | G434S (GGC→AGC) | speA ← | biosynthetic arginine decarboxylase |
| RA | 3,093,303 | +G | coding (187/705 nt) | yggS → | hypothetical protein |
| RA | 3,099,661 | (A)5→6 | intergenic (‑19/+164) | yggN ← / ← b2959 | hypothetical protein/hypothetical protein |
| RA | 3,107,469 | +C | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
| RA | 3,108,438 | C→A | noncoding (56/76 nt) | pheV → | tRNA‑Phe |
| RA | 3,115,116 | +C | coding (2013/2028 nt) | b2974 ← | putative endoglucanase |
| RA | 3,116,492 | C→T | E213K (GAA→AAA) | b2974 ← | putative endoglucanase |
| RA | 3,123,585 | +G | coding (953/2286 nt) | glcF ← | glycolate oxidase iron‑sulfur subunit |
| RA | 3,130,334 | A→G | V30V (GTT→GTC) | b2983 ← | hypothetical protein |
| RA | 3,132,550 | T→C | G135G (GGT→GGC) | yghT → | hypothetical protein |
| RA | 3,142,620 | T→C | Q179R (CAG→CGG) | hybA ← | hydrogenase‑2 small subunit |
| RA | 3,150,581 | T→C | Y111H (TAT→CAT) | metC → | cystathionine beta‑lyase |
| RA | 3,151,557 | C→T | intergenic (+119/‑21) | metC → / → yghB | cystathionine beta‑lyase/hypothetical protein |
| RA | 3,152,247 | +C | intergenic (+10/+29) | yghB → / ← yqhC | hypothetical protein/putative ARAC‑type regulatory protein |
| JC | 3,156,257 | (CCA)2→1 | coding (594‑596/930 nt) | yqhG → | hypothetical protein |
| RA | 3,158,202 | +C | coding (961/975 nt) | ygiRQ ← | Fe‑S oxidoreductase |
| RA | 3,158,281 | C→T | L294L (CTG→CTA) | ygiRQ ← | Fe‑S oxidoreductase |
| RA | 3,166,935 | 2 bp→CG | coding (312‑313/483 nt) | b3023 ← | hypothetical protein |
| RA | 3,167,940 | G→A | G33S (GGT→AGT) | qseB → | quorum sensing regulator B |
| RA | 3,185,776 | T→C | F121L (TTC→CTC) | yqiG → | putative membrane protein |
| RA | 3,185,807 | T→C | F131S (TTT→TCT) | yqiG → | putative membrane protein |
| RA | 3,186,925 | A→G | T504A (ACT→GCT) | yqiG → | putative membrane protein |
| RA | 3,195,844 | A→G | V480A (GTG→GCG) | glnE ← | GlnE |
| RA | 3,206,609 | C→T | S315S (AGC→AGT) | ygjE → | hypothetical protein |
| RA | 3,206,988 | A→G | T442A (ACC→GCC) | ygjE → | hypothetical protein |
| RA | 3,208,504 | T→C | V28A (GTT→GCT) | rpsU → | 30S ribosomal subunit protein S21 |
| RA | 3,221,097 | 2 bp→GC | coding (824‑825/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| RA | 3,221,392 | T→C | R373R (CGT→CGC) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| RA | 3,222,061 | A→G | K596K (AAA→AAG) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| RA | 3,222,944 | 4 bp→AGCA | coding (2671‑2674/3093 nt) | b3076 → | evolved beta‑D‑galactosidase alpha subunit |
| RA | 3,224,879 | Δ1 bp | coding (1005/1434 nt) | ygjI → | putative oxidoreductase |
| RA | 3,224,926 | +C | coding (1052/1434 nt) | ygjI → | putative oxidoreductase |
| RA | 3,225,194 | C→T | V440V (GTC→GTT) | ygjI → | putative oxidoreductase |
| RA | 3,236,177 | Δ1 bp | intergenic (+239/‑45) | ygjR → / → ygjT | hypothetical protein/putative transport protein |
| RA | 3,236,735 | +C | coding (514/966 nt) | ygjT → | putative transport protein |
| RA | 3,236,758 | Δ1 bp | coding (537/966 nt) | ygjT → | putative transport protein |
| RA | 3,237,242 | +C | intergenic (+55/‑342) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| RA | 3,237,247 | +C | intergenic (+60/‑337) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| RA | 3,240,123 | T→C | M278V (ATG→GTG) | uxaA ← | altronate hydrolase |
| RA | 3,242,993 | A→G | T84A (ACC→GCC) | exuT → | ExuT |
| RA | 3,250,165 | C→T | R74R (CGC→CGT) | yhaH → | putative cytochrome |
| RA | 3,253,742 | Δ1 bp | coding (551/552 nt) | yhaNM ← | hypothetical protein |
| RA | 3,255,594 | Δ1 bp | coding (4/1278 nt) | yhaO ← | putative transport system permease protein |
| RA | 3,255,616 | Δ1 bp | intergenic (‑19/+312) | yhaO ← / ← yhaP | putative transport system permease protein/putative L‑serine dehydratase |
| RA | 3,256,893 | +C | coding (405/423 nt) | yhaQ ← | putative L‑serine dehydratase |
| RA | 3,257,838 | +G | coding (2222/2241 nt) | tdcE ← | putative formate acetyltransferase 3 |
| RA | 3,269,236 | G→C | A59G (GCT→GGT) | b3124 ← | hypothetical protein |
| RA | 3,278,453 | T→C | L38L (TTG→CTG) | agaW → | PTS system N‑acetylgalactosameine‑specific IIC component 2 |
| RA | 3,279,197 | A→C | R145S (AGA→AGC) | agaA → | putative N‑acetylgalactosamine‑6‑phosphate deacetylase |
| RA | 3,291,253 | T→C | R71R (CGT→CGC) | yraM → | putative glycosylase |
| RA | 3,302,454 | (C)7→8 | coding (1005/1245 nt) | mtr ← | tryptophan‑specific transport protein |
| RA | 3,304,497 | A→G | R352R (CGT→CGC) | deaD ← | inducible ATP‑independent RNA helicase |
| RA | 3,310,422 | T→C | D133G (GAC→GGC) | rbfA ← | ribosome‑binding factor A |
| RA | 3,312,106 | T→C | Y517C (TAC→TGC) | infB ← | protein chain initiation factor IF‑2 |
| RA | 3,319,717 | A→G | noncoding (83/87 nt) | leuU ← | tRNA‑Leu |
| RA | 3,345,093 | A→G | E113G (GAA→GGA) | yhbJ → | hypothetical protein |
| RA | 3,352,254 | 2 bp→GC | intergenic (‑569/‑12) | yhcC ← / → gltB | hypothetical protein/glutamate synthase large subunit |
| RA | 3,362,606 | A→G | D722G (GAC→GGC) | yhcD → | putative outer membrane protein |
| RA | 3,389,812 | Δ1 bp | intergenic (‑149/+4151) | tldD ← / ← cafA | TldD/CafA |
| RA | 3,393,106 | Δ1 bp | intergenic (‑3443/+857) | tldD ← / ← cafA | TldD/CafA |
| RA | 3,406,487 | T→C | L415P (CTT→CCT) | b3258 → | sodium/pantothenate symporter |
| RA | 3,418,840 | +G | coding (1070/1089 nt) | b3269 → | putative transport system permease protein |
| RA | 3,421,120 | Δ1 bp | noncoding (60/121 nt) | rrfF ← | 5S ribosomal RNA |
| RA | 3,429,527 | Δ1 bp | coding (40/510 nt) | yrdD ← | putative DNA topoisomerase |
| RA | 3,430,453 | +C | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
| RA | 3,432,762 | T→C | R304R (CGT→CGC) | fmt → | 10‑formyltetrahydrofolate:L‑methionyl‑tRNA(fMet) N‑formyltransferase |
| RA | 3,446,406 | G→A | T134M (ACG→ATG) | rplP ← | 50S ribosomal subunit protein L16 |
| RA | 3,446,647 | T→C | T54A (ACC→GCC) | rplP ← | 50S ribosomal subunit protein L16 |
| RA | 3,455,292 | T→C | W427R (TGG→CGG) | b3325 → | YheF |
| RA | 3,458,811 | C→T | A51V (GCG→GTG) | hofG → | putative general protein secretion protein |
| RA | 3,464,165 | T→C | E66E (GAA→GAG) | bfr ← | bacterioferrin |
| RA | 3,471,916 | C→T | G92S (GGT→AGT) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,477,397 | T→C | N283S (AAC→AGC) | kefB ← | KefB |
| RA | 3,483,905 | T→C | V50A (GTG→GCG) | crp → | cyclic AMP receptor protein |
| RA | 3,494,555 | T→C | intergenic (+41/‑85) | nirD → / → nirC | nitrite reductase (NAD(P)H) subunit/Nitrite transporter |
| RA | 3,500,011 | G→A | R12Q (CGG→CAG) | b3372 → | hypothetical protein |
| RA | 3,500,309 | Δ1 bp | coding (333/363 nt) | b3372 → | hypothetical protein |
| RA | 3,506,318 | (C)5→6 | coding (1134/1227 nt) | yhfW ← | putative mutase |
| RA | 3,509,198 | A→G | V189A (GTG→GCG) | yhfZ ← | hypothetical protein |
| RA | 3,509,958 | Δ1 bp | intergenic (‑195/+314) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| RA | 3,510,121 | +G | intergenic (‑358/+151) | yhfZ ← / ← trpS | hypothetical protein/tryptophan tRNA synthetase |
| RA | 3,522,805 | A→G | Y774C (TAC→TGC) | mrcA → | penicillin‑binding protein 1A |
| RA | 3,537,405 | +GC | intergenic (+61/‑394) | b3407 → / → feoA | hypothetical protein/ferrous iron transport protein A |
| RA | 3,542,788 | A→G | S107G (AGC→GGC) | yhgH → | hypothetical protein |
| RA | 3,544,357 | +G | coding (163/1314 nt) | gntT → | gluconate permease |
| RA | 3,544,360 | +G | coding (166/1314 nt) | gntT → | gluconate permease |
| RA | 3,544,363 | +C | coding (169/1314 nt) | gntT → | gluconate permease |
| RA | 3,548,005 | C→T | G701D (GGT→GAT) | malP ← | maltodextrin phosphorylase |
| RA | 3,554,088 | +C | coding (2/624 nt) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,554,113 | Δ1 bp | coding (372/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,554,118 | +C | coding (367/396 nt) | yhgKJ ← | RNA phosphage cyclase |
| RA | 3,558,932 | 2 bp→GC | coding (153‑154/831 nt) | glpG ← | GlpG |
| RA | 3,573,700 | +C | intergenic (+403/+997) | yhgN → / ← gntK | hypothetical protein/gluconokinase 2 |
| RA | 3,575,446 | +G | coding (912/942 nt) | gntR ← | GntR |
| RA | 3,579,035 | T→C | R89R (CGT→CGC) | yhhY → | hypothetical protein |
| RA | 3,580,138 | A→G | L215L (CTA→CTG) | yhhZ → | hypothetical protein |
| RA | 3,609,245 | T→C | L54L (TTA→TTG) | yhhS ← | putative transport |
| RA | 3,610,653 | A→G | P18P (CCA→CCG) | yhhU → | hypothetical protein |
| RA | 3,621,612 | T→C | intergenic (+199/‑397) | yhhH → / → yhhI | hypothetical protein/putative receptor |
| RA | 3,624,949 | C→T | E724K (GAA→AAA) | yhiH ← | putative ATP‑binding component of a transport system, fragment 1 |
| RA | 3,627,142 | +G | intergenic (‑24/+23) | yhiH ← / ← yhiI | putative ATP‑binding component of a transport system, fragment 1/putative membrane protein |
| RA | 3,629,781 | A→G | V147A (GTT→GCT) | yhiJ ← | hypothetical protein |
| RA | 3,654,259 | T→C | T38A (ACC→GCC) | hdeA ← | hypothetical protein |
| RA | 3,670,236 | T→C | Y89H (TAT→CAT) | yhjC → | putative transcriptional regulator LYSR‑type |
| RA | 3,675,076 | +G | coding (920/2076 nt) | yhjG ← | hypothetical protein |
| RA | 3,677,270 | T→C | T147T (ACT→ACC) | kdgK → | ketodeoxygluconokinase |
| RA | 3,682,619 | A→G | R199R (CGT→CGC) | yhjK ← | hypothetical protein |
| RA | 3,686,775 | +T | intergenic (‑23/+9) | b3530 ← / ← yhjM | putative oxidoreductase subunit/putative endoglucanase |
| RA | 3,703,602 | 2 bp→GC | intergenic (‑183/+124) | dppB ← / ← dppA | dipeptide transport system permease protein 1/dipeptide transport protein |
| RA | 3,714,436 | 2 bp→GC | coding (261‑262/660 nt) | yiaD → | putative outer membrane protein |
| RA | 3,734,264 | 2 bp→GC | coding (542‑543/825 nt) | bax ← | putative ATP‑binding protein |
| RA | 3,735,666 | T→C | S181P (TCC→CCC) | malS → | alpha‑amylase |
| RA | 3,737,956 | 2 bp→CG | coding (623‑624/1254 nt) | avtA → | alanine‑alpha‑ketoisovalerate transaminase |
| RA | 3,738,723 | A→G | intergenic (+136/+15) | avtA → / ← yiaI | alanine‑alpha‑ketoisovalerate transaminase/hypothetical protein |
| RA | 3,743,603 | Δ1 bp | coding (1171/1275 nt) | yiaN → | putative membrane protein |
| RA | 3,754,310 | C→A | R382M (AGG→ATG) | yiaY ← | putative oxidoreductase |
| JC | 3,754,317 | +GCG | coding (1138/1149 nt) | yiaY ← | putative oxidoreductase |
| RA | 3,758,509 | T→C | D123G (GAC→GGC) | selA ← | selenocysteine synthase |
| RA | 3,764,283 | T→C | V107A (GTT→GCT) | yibA → | hypothetical protein |
| RA | 3,765,203 | A→T | Q119L (CAG→CTG) | yibJ → | hypothetical protein |
| RA | 3,765,234 | G→A | G129G (GGG→GGA) | yibJ → | hypothetical protein |
| RA | 3,766,847 | T→C | intergenic (+582/‑125) | yibG → / → b4549 | hypothetical protein/hypothetical protein |
| RA | 3,771,793 | T→C | V629A (GTG→GCG) | mtlA → | PTS system, mannitol‑specific enzyme IIABC components |
| RA | 3,778,301 | T→C | V283A (GTA→GCA) | lldD → | L‑lactate dehydrogenase |
| RA | 3,782,476 | A→G | V56A (GTT→GCT) | yibN ← | hypothetical protein |
| RA | 3,783,479 | A→G | D198G (GAT→GGT) | yibO → | putative 2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase |
| RA | 3,788,398 | A→G | V192A (GTG→GCG) | tdh ← | threonine dehydrogenase |
| RA | 3,816,074 | A→G | T234A (ACC→GCC) | dinD → | DNA‑damage‑inducible protein |
| RA | 3,825,188 | T→C | M369V (ATG→GTG) | gltS ← | glutamate transport |
| RA | 3,840,766 | G→A | C243C (TGC→TGT) | yicO ← | hypothetical protein |
| RA | 3,853,551 | T→C | Q16R (CAG→CGG) | yidG ← | hypothetical protein |
| RA | 3,854,698 | T→C | Y445C (TAC→TGC) | yidJ ← | putative sulfatase |
| RA | 3,857,430 | A→G | I105T (ATC→ACC) | yidK ← | putative cotransporter |
| RA | 3,859,397 | A→G | V73A (GTG→GCG) | glvG ← | putative 6‑phospho‑beta‑glucosidase |
| RA | 3,866,583 | A→G | S119S (AGT→AGC) | yidR ← | hypothetical protein |
| RA | 3,866,718 | T→C | A74A (GCA→GCG) | yidR ← | hypothetical protein |
| RA | 3,870,631 | Δ1 bp | coding (610/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,870,765 | +G | coding (476/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,870,876 | Δ1 bp | coding (365/1764 nt) | dgoA ← | 2‑oxo‑3‑deoxygalactonate 6‑phosphate aldolase |
| RA | 3,872,450 | +G | coding (338/387 nt) | yidW ← | regulator protein for dgo operon |
| RA | 3,873,627 | Δ1 bp | coding (506/672 nt) | yidX → | putative replicase |
| RA | 3,873,986 | T→C | T199A (ACG→GCG) | yidA ← | hypothetical protein |
| RA | 3,876,595 | G→C | P385A (CCG→GCG) | gyrB ← | DNA gyrase subunit B |
| RA | 3,878,432 | A→G | C140R (TGC→CGC) | recF ← | RecF |
| RA | 3,881,483 | Δ1 bp | intergenic (‑126/‑482) | dnaA ← / → rpmH | DnaA/50S ribosomal subunit protein L34 |
| RA | 3,887,809 | A→G | intergenic (+35/‑56) | b3708 → / → tnaB | tryptophanase/low affinity tryptophan permease |
| RA | 3,893,920 | C→T | G107S (GGC→AGC) | yieG ← | putative membrane/transport protein |
| RA | 3,896,324 | +G | coding (698/711 nt) | b3718 ← | putative isomerase |
| RA | 3,896,435 | G→A | A196V (GCG→GTG) | b3718 ← | putative isomerase |
| RA | 3,899,440 | T→C | T137A (ACC→GCC) | yieC ← | putative receptor protein |
| RA | 3,923,014 | A→G | I83T (ATA→ACA) | gidA ← | glucose‑inhibited division |
| RA | 3,927,062 | +G | coding (2/1284 nt) coding (169/183 nt) |
yieM ← b4564 ← |
hypothetical protein hypothetical protein |
| RA | 3,929,523 | T→C | V194A (GTG→GCG) | kup → | low affinity potassium transport system |
| RA | 3,930,457 | Δ1 bp | coding (1515/1560 nt) | kup → | low affinity potassium transport system |
| RA | 3,930,568 | +G | intergenic (+66/‑373) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| RA | 3,930,677 | +G | intergenic (+175/‑264) | kup → / → rbsD | low affinity potassium transport system/RbsD |
| RA | 3,935,895 | A→G | T15A (ACC→GCC) | rbsR → | RbsR |
| RA | 3,937,900 | G→A | G113G (GGC→GGT) | yieO ← | putative transport protein |
| JC | 3,938,587 | +TGC | coding (220/546 nt) | yiePs ← | hypothetical protein |
| RA | 3,941,734 | Δ1 bp | noncoding (409/2906 nt) | rrlC → | 23S ribosomal RNA |
| RA | 3,944,244 | C→A | intergenic (+13/‑80) | rrlC → / → rrfC | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 3,944,676 | 2 bp→GC | intergenic (+20/+75) | trpT → / ← yifDA | tRNA‑Trp/transcription regulator |
| RA | 3,945,351 | +C | coding (1/600 nt) coding (240/240 nt) |
yifDA ← yifDA ← |
transcription regulator transcription regulator |
| RA | 3,950,557 | 2 bp→GC | coding (451‑452/930 nt) | ilvE → | branched‑chain amino‑acid aminotransferase |
| RA | 3,951,166 | +C | coding (35/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| RA | 3,951,168 | +G | coding (37/1818 nt) | ilvD → | dihydroxyacid dehydratase |
| RA | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| RA | 3,957,124 | +G | intergenic (+58/+26) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| RA | 3,957,548 | 1 bp→GG | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| RA | 3,957,551 | +T | intergenic (‑120/‑741) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| RA | 3,957,560 | +C | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| RA | 3,958,877 | 2 bp→CG | coding (586‑587/2022 nt) | rep → | rep helicase |
| RA | 3,960,578 | 2 bp→CG | coding (1266‑1267/1485 nt) | gppA ← | guanosine pentaphosphatase |
| RA | 3,961,588 | C→G | R86T (AGG→ACG) | gppA ← | guanosine pentaphosphatase |
| RA | 3,964,491 | A→G | T154A (ACT→GCT) | rho → | transcription termination factor Rho |
| RA | 3,967,593 | A→G | K317K (AAA→AAG) | wzzE → | putative transport protein |
| JC | 3,968,317 | +CGT | coding (612/1170 nt) | wecB → | UDP‑N‑acetyl glucosamine ‑2‑epimerase |
| RA | 3,969,103 | 2 bp→GC | coding (232‑233/1263 nt) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,971,075 | 2 bp→GC | coding (942‑943/1068 nt) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | 3,972,637 | 2 bp→GC | coding (430‑431/546 nt) | wecD → | hypothetical protein |
| RA | 3,975,313 | Δ1 bp | intergenic (+173/‑901) | wzxE → / → wecF | putative cytochrome/TDP‑Fuc4NAc:lipidII transferase |
| RA | 3,978,702 | C→T | S68F (TCC→TTC) | yifK → | putative amino acid/amine transport protein |
| RA | 3,979,535 | +G | coding (1036/1386 nt) | yifK → | putative amino acid/amine transport protein |
| RA | 3,979,546 | Δ1 bp | coding (1047/1386 nt) | yifK → | putative amino acid/amine transport protein |
| RA | 3,980,297 | (C)8→9 | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| RA | 3,980,918 | 2 bp→CG | coding (348‑349/1236 nt) | aslB → | putative arylsulfatase regulator |
| RA | 3,987,586 | 2 bp→GC | coding (814‑815/963 nt) | hemC ← | porphobilinogen deaminase |
| RA | 3,987,822 | 2 bp→CG | coding (578‑579/963 nt) | hemC ← | porphobilinogen deaminase |
| RA | 3,998,290 | +G | coding (379/486 nt) | b4566 ← | hypothetical protein |
| RA | 4,001,421 | 2 bp→GC | coding (381‑382/903 nt) | rarD ← | hypothetical protein |
| RA | 4,001,486 | 2 bp→GC | coding (316‑317/903 nt) | rarD ← | hypothetical protein |
| RA | 4,001,717 | +C | coding (86/903 nt) | rarD ← | hypothetical protein |
| RA | 4,004,979 | +G | coding (1511/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| RA | 4,004,984 | +CG | coding (1516/1833 nt) | recQ → | ATP‑dependent DNA helicase |
| RA | 4,005,601 | +C | coding (237/282 nt) | b4568 → | hypothetical protein |
| RA | 4,006,483 | +C | coding (183/207 nt) | b4554 ← | hypothetical protein |
| RA | 4,007,718 | 2 bp→CG | coding (943‑944/1023 nt) | pldB → | lysophospholipase L(2) |
| RA | 4,007,907 | +GG | intergenic (+109/‑11) | pldB → / → b4555 | lysophospholipase L(2)/hypothetical protein |
| RA | 4,008,375 | +A | coding (458/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,391 | +C | coding (474/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,393 | C→G | A159G (GCT→GGT) | b4555 → | hypothetical protein |
| RA | 4,008,400 | +GAAA | coding (483/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,404 | +G | coding (487/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,411 | +C | coding (494/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,421 | +T | coding (504/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,429 | +TG | coding (512/516 nt) | b4555 → | hypothetical protein |
| RA | 4,008,469 | +G | intergenic (+36/‑197) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,008,473 | +G | intergenic (+40/‑193) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,008,491 | 2 bp→CG | intergenic (+58/‑174) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,008,525 | +G | intergenic (+92/‑141) | b4555 → / → yigM | hypothetical protein/hypothetical protein |
| RA | 4,013,176 | C→G | G182R (GGA→CGA) | ysgA ← | hypothetical protein |
| RA | 4,013,177 | +C | coding (543/999 nt) | ysgA ← | hypothetical protein |
| RA | 4,013,717 | +G | coding (3/999 nt) | ysgA ← | hypothetical protein |
| RA | 4,013,772 | +C | intergenic (‑53/‑246) | ysgA ← / → udp | hypothetical protein/uridine phosphorylase |
| RA | 4,016,743 | C→T | P101L (CCC→CTC) | ubiE → | UbiE |
| RA | 4,019,857 | C→T | intergenic (+56/‑28) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| RA | 4,019,860 | Δ2 bp | intergenic (+59/‑24) | b3836 → / → b3838 | hypothetical protein/hypothetical protein |
| RA | 4,021,684 | Δ1 bp | coding (542/609 nt)|coding (1/243 nt) | b4556 → tatD → |
hypothetical protein Mg‑dependent DNase |
| RA | 4,026,252 | 2 bp→GC | coding (110‑111/1164 nt) | fadA ← | thiolase I |
| RA | 4,031,984 | +C | coding (1250/1299 nt) | trkH → | TrkH |
| RA | 4,039,349 | T→C | P77P (CCA→CCG) | mobA ← | MobA |
| RA | 4,039,960 | Δ1 bp | intergenic (+42/‑36) | yihD → / → yihE | hypothetical protein/hypothetical protein |
| RA | 4,041,654 | G→A | intergenic (+29/‑125) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| RA | 4,041,671 | (T)6→7 | intergenic (+46/‑108) | dsbA → / → b3861 | protein disulfide isomerase I/putative GTP‑binding protein |
| RA | 4,051,144 | Δ1 bp | intergenic (+146/+305) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| RA | 4,051,170 | +C | intergenic (+172/+279) | hemN → / ← glnG | O2‑independent coproporphyrinogen III oxidase/GlnG |
| RA | 4,057,759 | +C | coding (1773/1776 nt) | yihK → | putative GTP‑binding factor |
| RA | 4,057,859 | (T)9→8 | intergenic (+97/‑167) | yihK → / → yihL | putative GTP‑binding factor/putative transcriptional regulator |
| RA | 4,058,326 | A→G | T101A (ACC→GCC) | yihL → | putative transcriptional regulator |
| RA | 4,059,768 | A→G | intergenic (+44/‑58) | yihM → / → yihN | hypothetical protein/putative resistance protein |
| RA | 4,061,961 | Δ1 bp | coding (1386/1458 nt) | b3876 ← | putative permease |
| RA | 4,066,222 | T→C | Y212C (TAC→TGC) | yihQ ← | putative glycosidase |
| RA | 4,071,652 | A→G | S114G (AGC→GGC) | yihV → | putative kinase |
| RA | 4,085,675 | Δ1 bp | intergenic (+38/+13) | yiiG → / ← frvR | hypothetical protein/putative frv operon regulatory protein |
| RA | 4,088,793 | T→C | T385T (ACA→ACG) | frvB ← | PTS system, fructose‑like enzyme IIBC component |
| RA | 4,091,351 | C→T | G168D (GGC→GAC) | rhaD ← | rhamnulose‑phosphate aldolase |
| MC JC | 4,091,572 | 3461 bp→29 bp | [rhaD]–rhaB | [rhaD], rhaA, rhaB | |
| RA | 4,103,519 | +T | intergenic (‑268/‑530) | cpxR ← / → yiiP | transcriptional regulator in 2‑component system/putative transport system permease protein |
| RA | 4,108,732 | T→C | Q119R (CAG→CGG) | tpiA ← | triosephosphate isomerase |
| RA | 4,109,226 | A→G | L190P (CTA→CCA) | yiiQ ← | hypothetical protein |
| RA | 4,114,335 | T→C | A156A (GCA→GCG) | glpK ← | glycerol kinase |
| RA | 4,130,398 | A→G | D68G (GAC→GGC) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| RA | 4,132,580 | T→A | I389N (ATC→AAC) | katG → | catalase |
| RA | 4,139,669 | +C | coding (233/330 nt) coding (132/159 nt) |
yijI → b4558 ← |
hypothetical protein hypothetical protein |
| RA | 4,145,321 | T→C | A192A (GCA→GCG) | yijO ← | putative ARAC‑type regulatory protein |
| RA | 4,155,035 | A→G | T203A (ACG→GCG) | argH → | argininosuccinate lyase |
| RA | 4,158,827 | G→T | G61V (GGC→GTC) | yijC → | hypothetical protein |
| RA | 4,161,702 | C→G | A162G (GCA→GGA) | btuB → | BtuB |
| RA | 4,162,448 | A→G | T411A (ACA→GCA) | btuB → | BtuB |
| RA | 4,170,208 | T→C | G191G (GGT→GGC) | murB → | UDP‑N‑acetylenolpyruvoylglucosamine reductase |
| RA | 4,171,680 | A→G | V309A (GTA→GCA) | coaA ← | pantothenate kinase |
| RA | 4,175,949 | +G | intergenic (+82/‑76) | nusG → / → rplK | NusG/50S ribosomal subunit protein L11 |
| RA | 4,182,169 | A→G | H1116R (CAC→CGC) | rpoB → | RNA polymerase beta subunit |
| RA | 4,194,577 | 2 bp→GC | coding (97‑98/774 nt) | yjaD → | hypothetical protein |
| RA | 4,200,901 | A→G | *466W (TGA→TGG) T2A (ACG→GCG) |
hydH → hydG → |
HydH HydG |
| RA | 4,228,096 | A→G | N55S (AAC→AGC) | yjbC → | hypothetical protein |
| RA | 4,247,622 | A→G | T164A (ACG→GCG) | malM → | MalM |
| RA | 4,293,107 | A→G | T350A (ACC→GCC) | gltP → | glutamate‑aspartate symport protein |
| RA | 4,293,960 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate‑aspartate symport protein/hypothetical protein |
| RA | 4,311,496 | +C | coding (301/408 nt) | phnQ ← | hypothetical protein |
| RA | 4,312,334 | A→G | L116P (CTG→CCG) | phnP ← | PhnP |
| RA | 4,316,203 | T→A | Q47L (CAG→CTG) | phnK ← | ATP‑binding component of phosphonate transport |
| RA | 4,325,494 | C→G | A261G (GCG→GGG) | yjdA → | putative vimentin |
| RA | 4,334,019 | A→G | L197L (CTT→CTC) | yjdE ← | putative amino acid/amine transport protein |
| RA | 4,337,885 | A→G | V73A (GTC→GCC) | adiA ← | biodegradative arginine decarboxylase |
| RA | 4,354,595 | A→G | L534P (CTG→CCG) | cadA ← | lysine decarboxylase 1 |
| RA | 4,362,298 | T→C | Q108R (CAG→CGG) | dsbD ← | thiol:disulfide interchange protein |
| RA | 4,384,043 | A→G | V969A (GTG→GCG) | yjeP ← | putative periplasmic binding protein |
| RA | 4,389,966 | A→G | noncoding (29/76 nt) | glyV → | tRNA‑Gly |
| RA | 4,392,651 | (G)5→4 | coding (1008/1548 nt) | yjeF → | hypothetical protein |
| RA | 4,395,798 | A→G | H270R (CAC→CGC) | mutL → | MutL |
| RA | 4,402,992 | A→G | N243S (AAC→AGC) | purA → | adenylosuccinate synthetase |
| RA | 4,413,828 | A→G | Y19H (TAT→CAT) | b4188 ← | hypothetical protein |
| RA | 4,433,048 | A→G | Y366H (TAT→CAT) | cpdB ← | 2',3'‑cyclic‑nucleotide 2'‑phosphodiesterase |
| RA | 4,435,684 | +A | coding (400/501 nt) | ytfI → | hypothetical protein |
| RA | 4,444,741 | A→G | E1018G (GAG→GGG) | ytfN → | hypothetical protein |
| RA | 4,448,541 | +C | intergenic (+46/‑92) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR |
| RA | 4,448,543 | +C | intergenic (+48/‑90) | ytfQ → / → ytfR | putative LACI‑type transcriptional regulator/YtfR |
| RA | 4,449,738 | +G | coding (1106/1254 nt) | ytfR → | YtfR |
| RA | 4,467,145 | A→G | L649L (TTA→TTG) | mgtA → | Mg2+ transport ATPase, P‑type 1 |
| RA | 4,472,408 | A→G | intergenic (+117/‑28) | b4251 → / → b4252 | hypothetical protein/hypothetical protein |
| RA | 4,474,826 | +A | intergenic (+1/+44) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| MC JC | 4,474,849 | 20 bp→30 bp | intergenic (+24/+2) | yjgL → / ← argI | hypothetical protein/ornithine carbamoyltransferase 1 |
| RA | 4,476,406 | A→G | D124G (GAC→GGC) | yjgD → | hypothetical protein |
| RA | 4,477,041 | Δ1 bp | intergenic (‑151/‑269) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| RA | 4,477,068 | +C | intergenic (‑178/‑242) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| RA | 4,477,281 | Δ1 bp | intergenic (‑391/‑29) | b4256 ← / → yjgN | hypothetical protein/hypothetical protein |
| RA | 4,477,321 | Δ1 bp | coding (12/1182 nt) | yjgN → | hypothetical protein |
| RA | 4,478,503 | (A)7→6 | intergenic (+12/+47) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| RA | 4,478,511 | Δ1 bp | intergenic (+20/+39) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| RA | 4,478,527 | Δ1 bp | intergenic (+36/+23) | yjgN → / ← valS | hypothetical protein/valine tRNA synthetase |
| RA | 4,490,864 | T→C | Q19R (CAG→CGG) | idnO ← | 5‑keto‑D‑gluconate 5‑reductase |
| RA | 4,502,680 | C→T | A352V (GCA→GTA) | b4279 → | putative transport protein |
| RA | 4,532,411 | A→G | intergenic (‑1059/‑172) | yjhQ ← / → yjhR | hypothetical protein/putative frameshift suppressor |
| RA | 4,542,643 | Δ1 bp | intergenic (+46/‑22) | b4316 → / → fimD | Pil/FimD |
| RA | 4,544,170 | T→C | I502I (ATT→ATC) | fimD → | FimD |
| RA | 4,555,245 | T→C | Y205C (TAC→TGC) | yjiE ← | putative transcriptional regulator LYSR‑type |
| RA | 4,572,272 | G→A | G190E (GGG→GAG) | yjiU → | hypothetical protein |
| RA | 4,573,190 | Δ1 bp | coding (1487/1542 nt) | yjiU → | hypothetical protein |
| RA | 4,583,050 | G→A | Q446* (CAA→TAA) | hsdR ← | endonuclease R |
| RA | 4,593,254 | 2 bp→GC | coding (59‑60/807 nt) | yjjM ← | hypothetical protein |
| RA | 4,593,336 | +G | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
| RA | 4,595,908 | T→C | Q355R (CAG→CGG) | mdoB ← | phosphoglycerol transferase I |
| RA | 4,600,078 | C→T | W135* (TGG→TAG) | yjjP ← | putative structural protein |
| RA | 4,601,332 | A→G | Q96R (CAG→CGG) | yjjQ → | putative regulator |
| RA | 4,603,663 | (G)8→9 | noncoding (72/88 nt) | leuV ← | tRNA‑Leu |
| RA | 4,608,595 | 2 bp→GC | intergenic (+23/‑369) | prfC → / → osmY | peptide chain release factor RF‑3/OsmY |
| RA | 4,614,238 | G→T | L133I (CTA→ATA) | yjjI ← | hypothetical protein |
| RA | 4,618,604 | T→C | G51G (GGT→GGC) | deoD → | purine‑nucleoside phosphorylase |
| RA | 4,632,259 | T→C | A207A (GCA→GCG) | rob ← | right origin‑binding protein |
| RA | 4,636,923 | T→C | W393R (TGG→CGG) | creD → | CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 363569 | 365526 | 1958 | 170 [164] | [1] 425 | lacZ | beta‑D‑galactosidase |
| * | * | ÷ | NC_000913 | 2518987–2519006 | 2519122–2519072 | 67–136 | 166 [164] | [163] 166 | [valU]–[valX] | [valU],[valX] |
| * | * | ÷ | NC_000913 | 3421336–3421870 | 3422242–3421880 | 11–907 | 165 [158] | [158] 166 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| * | * | ÷ | NC_000913 | 3943608–3943706 | 3943790–3943771 | 66–183 | 167 [164] | [161] 166 | rrlC | 23S ribosomal RNA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 269765 = | NA (NA) | 373 (1.090) | 139/184 | 0.3 | 98.7% | coding (300/405 nt) | yi91a | hypothetical protein |
| ? | NC_000913 | = 370983 | 5 (0.010) | coding (536/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
| * | ? | NC_000913 | = 279335 | NA (NA) | 338 (0.990) | 148/184 | 0.1 | 96.6% | coding (252/339 nt) | b4505 | hypothetical protein |
| ? | NC_000913 | 370982 = | 12 (0.040) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
| * | ? | NC_000913 | 365527 = | 1 (0.000) | 390 (1.180) | 147/178 | 0.1 | 71.0% | coding (3/3075 nt) | lacZ | beta‑D‑galactosidase |
| ? | NC_000913 | 4589230 = | 318 (0.960) | coding (4/1656 nt) | tsr | methyl‑accepting chemotaxis protein I | |||||
| * | ? | NC_000913 | 3192559 = | 375 (1.090) | 295 (1.090) +ATGTGTTAATGAAACCTTC |
99/146 | 0.9 | 50.6% | intergenic (+18/+402) | b3051/b3052 | putative membrane protein/putative kinase |
| ? | NC_000913 | = 3192916 | 352 (1.030) | intergenic (+375/+45) | b3051/b3052 | putative membrane protein/putative kinase | |||||
| * | ? | NC_000913 | 3349258 = | 34 (0.100) | 372 (1.090) | 150/184 | 0.1 | 91.6% | coding (1403/2331 nt) | arcB | aerobic respiration sensor‑response protein |
| ? | NC_000913 | = 3349263 | NA (NA) | coding (1398/2331 nt) | arcB | aerobic respiration sensor‑response protein | |||||