Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 720,776 T→C I61V (ATT→GTT)  kdpE ← KdpE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913720,7760TC100.0% 681.9 / NA 195I61V (ATT→GTT) kdpEKdpE
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (89/106);  total (89/106)

Only 100 of 203 total aligned reads displayed.

GCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAATCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTC  >  NC_000913/720686‑720863
                                                                                          |                                                                                       
gcgcGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAAccc                                                                                       >  2:2298426/1‑93 (MQ=255)
    ggcgATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATc                                                                                   >  2:727515/1‑93 (MQ=255)
    ggcgATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATc                                                                                   <  2:2681744/93‑1 (MQ=255)
       gATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCAcc                                                                                >  2:2066132/1‑93 (MQ=255)
       gATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCAcc                                                                                >  1:3264341/1‑93 (MQ=255)
       gATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCAcc                                                                                >  1:6076099/1‑93 (MQ=255)
           ttGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCg                                                                            <  2:340442/93‑1 (MQ=255)
               cGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCa                                                                        >  1:5324104/1‑93 (MQ=255)
               cGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCa                                                                        >  1:2868926/1‑93 (MQ=255)
                gCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAg                                                                       <  2:2386058/93‑1 (MQ=255)
                gCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAg                                                                       >  1:2255748/1‑93 (MQ=255)
                gCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAg                                                                       >  1:1188506/1‑93 (MQ=255)
                  tctctcCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGc                                                                     <  1:2351380/93‑1 (MQ=255)
                  tctctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGc                                                                     >  2:4423788/1‑93 (MQ=255)
                  tctctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGc                                                                     <  1:6321832/93‑1 (MQ=255)
                   ctctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGcc                                                                    >  1:4557327/1‑93 (MQ=255)
                    tctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCg                                                                   >  1:1130818/1‑93 (MQ=255)
                    tctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCg                                                                   >  2:5658930/1‑93 (MQ=255)
                     ctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCga                                                                  <  1:2369851/93‑1 (MQ=255)
                     ctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCga                                                                  <  2:6104780/93‑1 (MQ=255)
                     ctTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCga                                                                  >  1:4171765/1‑93 (MQ=255)
                      ttCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCgag                                                                 >  1:2240581/1‑93 (MQ=255)
                      ttCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCgag                                                                 <  2:1799018/93‑1 (MQ=255)
                       tCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCgaga                                                                <  1:2936544/93‑1 (MQ=255)
                       tCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCgaga                                                                <  1:350615/93‑1 (MQ=255)
                        cGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGAt                                                               <  1:970889/93‑1 (MQ=255)
                         gCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATc                                                              <  2:5140969/93‑1 (MQ=255)
                         gCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATc                                                              >  2:4841371/1‑93 (MQ=255)
                           tgcgtgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCga                                                            >  1:5042576/1‑93 (MQ=255)
                           tgcgtgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCga                                                            <  1:6397614/93‑1 (MQ=255)
                           tgcgtgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCga                                                            <  2:3977347/93‑1 (MQ=255)
                           tgcgtgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCga                                                            <  2:5945175/93‑1 (MQ=255)
                            gcgtgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCgag                                                           >  2:678233/1‑93 (MQ=255)
                             cgtgggGAAAGCACAATCCCCGGCACCGCGCTCCACTGGGGCAGGTCGCGGATAAACTCAACCCCATCCCCATCGGGCAGGCCGAGATCgaga                                                          <  2:5218379/93‑1 (MQ=255)
                               tgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGaat                                                        <  2:13985/93‑1 (MQ=255)
                               tgcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGaat                                                        >  2:3681804/1‑93 (MQ=255)
                                gcgGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGaata                                                       <  1:5721626/93‑1 (MQ=255)
                                    aaaGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCa                                                   >  1:2961590/1‑93 (MQ=255)
                                          caATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTg                                             <  1:3364385/93‑1 (MQ=255)
                                            aTCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGc                                           <  1:3710649/93‑1 (MQ=255)
                                             tCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCt                                          >  1:6043210/1‑93 (MQ=255)
                                             tCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCt                                          >  1:3160835/1‑93 (MQ=255)
                                              cACCGGCGCCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCtt                                         <  2:6185525/93‑1 (MQ=255)
                                              cACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCtt                                         <  1:425935/93‑1 (MQ=255)
                                               aCCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTa                                        >  1:4974055/1‑93 (MQ=255)
                                                ccGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTAc                                       >  2:2814529/1‑93 (MQ=255)
                                                ccGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTAc                                       >  2:637373/1‑93 (MQ=255)
                                                ccGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTAc                                       <  2:1602612/93‑1 (MQ=255)
                                                ccGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTAc                                       <  1:3953033/93‑1 (MQ=255)
                                                 cGGCACCGCTCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACg                                      <  1:1294319/93‑1 (MQ=255)
                                                 cGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAACCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACg                                      <  1:2545464/93‑1 (MQ=255)
                                                  ggCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACgg                                     >  1:2063522/1‑93 (MQ=255)
                                                  ggCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACgg                                     >  2:4635945/1‑93 (MQ=255)
                                                  ggCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACgg                                     <  2:3741665/93‑1 (MQ=255)
                                                   gCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACggg                                    <  1:3620178/93‑1 (MQ=255)
                                                    cACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGt                                   <  1:3847791/93‑1 (MQ=255)
                                                     aCCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGtt                                  >  1:3581220/1‑93 (MQ=255)
                                                      ccGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTg                                 <  1:394919/93‑1 (MQ=255)
                                                       cgcgCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGc                                <  1:4721417/93‑1 (MQ=255)
                                                       cgcgCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGc                                <  2:2635975/93‑1 (MQ=255)
                                                       cgcgCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGc                                <  1:4033046/93‑1 (MQ=255)
                                                       agcgcTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGc                                >  1:708882/2‑93 (MQ=255)
                                                        gcgcTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGcc                               <  2:6421178/93‑1 (MQ=255)
                                                         cgcTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCg                              <  1:280876/93‑1 (MQ=255)
                                                          gcTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGc                             <  2:3348435/93‑1 (MQ=255)
                                                          gcTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGc                             >  1:1819223/1‑93 (MQ=255)
                                                          gcTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGc                             >  2:1106491/1‑93 (MQ=255)
                                                           cTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCt                            <  2:549868/93‑1 (MQ=255)
                                                           cTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCt                            >  1:1517122/1‑93 (MQ=255)
                                                           cTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCt                            >  2:4780777/1‑93 (MQ=255)
                                                            tCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCtt                           >  1:3729208/1‑93 (MQ=255)
                                                            tCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCtt                           >  2:1196308/1‑93 (MQ=255)
                                                             ccACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTc                          <  1:105223/93‑1 (MQ=255)
                                                             ccACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTc                          <  2:3594745/93‑1 (MQ=255)
                                                             ccACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTc                          >  2:5284613/1‑93 (MQ=255)
                                                              cACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACTGGTTGCCGCTTcc                         <  1:6198702/93‑1 (MQ=255)
                                                               aCTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCa                        >  1:1476981/1‑93 (MQ=255)
                                                                cTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAg                       <  2:4981149/93‑1 (MQ=255)
                                                                   gcgcAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCaa                    >  2:3250534/1‑93 (MQ=255)
                                                                     gcAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGc                  <  1:1722317/93‑1 (MQ=255)
                                                                      cAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTACAGCAAGcc                 >  1:5158168/1‑93 (MQ=255)
                                                                        ggTCGCGGATAAACTCAACCCCATCACCATCGAGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCcgc               <  2:4111924/93‑1 (MQ=255)
                                                                          tCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGt             <  1:1623579/93‑1 (MQ=255)
                                                                           cgcgGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGtt            <  1:5459100/93‑1 (MQ=255)
                                                                            gcgGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTg           <  2:6253995/93‑1 (MQ=255)
                                                                             cgGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGc          <  2:1917413/93‑1 (MQ=255)
                                                                             cgGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGc          >  1:1923431/1‑93 (MQ=255)
                                                                             cgGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGc          <  1:3804032/93‑1 (MQ=255)
                                                                              ggATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCa         <  2:1535196/93‑1 (MQ=255)
                                                                              ggATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCa         <  2:5090588/93‑1 (MQ=255)
                                                                              ggATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCa         >  2:3046813/1‑93 (MQ=255)
                                                                                aTAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGc       <  2:4189346/93‑1 (MQ=255)
                                                                                  aaaCTCACCCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGt     <  1:6100359/93‑1 (MQ=255)
                                                                                  aaaCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGt     <  2:5931574/93‑1 (MQ=255)
                                                                                  aaaCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGt     <  2:3365655/93‑1 (MQ=255)
                                                                                   accTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGtt    <  1:921438/91‑1 (MQ=255)
                                                                                   aaCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGtt    >  1:5466159/1‑93 (MQ=255)
                                                                                    aCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGttt   <  1:3063470/93‑1 (MQ=255)
                                                                                    aCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGttt   <  2:4451549/93‑1 (MQ=255)
                                                                                     cTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTc  >  2:6074578/1‑93 (MQ=255)
                                                                                          |                                                                                       
GCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAATCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTC  >  NC_000913/720686‑720863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAATCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTCGGCCTC  >  NC_000913/720683‑720869
                                                                                             |                                                                                             
CCAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAAC                                                                                               >  SRR4302534.2042025/1‑94 (MQ=60)
CCAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAAC                                                                                               >  SRR4302534.4750059/1‑94 (MQ=60)
 CAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACC                                                                                              <  SRR4302534.3495529/94‑1 (MQ=60)
 CAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACC                                                                                              >  SRR4302534.5359231/1‑94 (MQ=60)
 CAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACC                                                                                              >  SRR4302534.6099429/1‑94 (MQ=60)
    CGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCA                                                                                           <  SRR4302534.4039831/94‑1 (MQ=60)
     GCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCAT                                                                                          <  SRR4302534.624551/94‑1 (MQ=60)
        GCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCAC                                                                                       >  SRR4302534.3018286/1‑94 (MQ=60)
         gagttctctcgcagtctacgcgGCGTGCGGAAAGCACGATCACCGGAACCGCGCTCCGGTGGCGCAGGTCGCGGATAAACTCACCCCCATCCCC                                                                                      <  SRR4302534.1233009/72‑1 (MQ=45)
         CGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACC                                                                                      >  SRR4302534.958938/1‑94 (MQ=60)
         CGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACC                                                                                      >  SRR4302534.3351272/1‑94 (MQ=60)
         CGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACC                                                                                      >  SRR4302534.6241308/1‑94 (MQ=60)
          GATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCA                                                                                     <  SRR4302534.6172700/94‑1 (MQ=60)
             TTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCG                                                                                  <  SRR4302534.3743545/94‑1 (MQ=60)
                 TCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCA                                                                              >  SRR4302534.5467708/1‑94 (MQ=60)
                 TCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCA                                                                              >  SRR4302534.2944256/1‑94 (MQ=60)
                 TCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCA                                                                              >  SRR4302534.1515884/1‑94 (MQ=60)
                  CGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAG                                                                             >  SRR4302534.2315542/1‑94 (MQ=60)
                  CGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAG                                                                             >  SRR4302534.1219761/1‑94 (MQ=60)
                     TCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCC                                                                          <  SRR4302534.6492669/94‑1 (MQ=60)
                     TCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCC                                                                          >  SRR4302534.4680885/1‑94 (MQ=60)
                     TCTCTCCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCC                                                                          <  SRR4302534.2413792/94‑1 (MQ=60)
                      CTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCG                                                                         >  SRR4302534.1160372/1‑94 (MQ=60)
                       TCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGA                                                                        >  SRR4302534.2301004/1‑94 (MQ=60)
                       TCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGA                                                                        <  SRR4302534.2425829/94‑1 (MQ=60)
                       TCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGA                                                                        >  SRR4302534.4284453/1‑94 (MQ=60)
                        CTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAG                                                                       >  SRR4302534.2299967/1‑94 (MQ=60)
                        CTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAG                                                                       <  SRR4302534.2432765/94‑1 (MQ=60)
                          TCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGAT                                                                     <  SRR4302534.359598/94‑1 (MQ=60)
                          TCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGAT                                                                     <  SRR4302534.6578123/94‑1 (MQ=60)
                          TCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGAT                                                                     <  SRR4302534.3013617/94‑1 (MQ=60)
                           CGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATC                                                                    <  SRR4302534.995623/94‑1 (MQ=60)
                           CGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATC                                                                    >  SRR4302534.2563175/1‑94 (MQ=60)
                           CGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATC                                                                    >  SRR4302534.1281217/1‑94 (MQ=60)
                            GCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCG                                                                   <  SRR4302534.2316212/94‑1 (MQ=60)
                            GCTACGAGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCCCCATCGGGCAGGCCGAGATCG                                                                   <  SRR4302534.6361921/94‑1 (MQ=60)
                             CTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGA                                                                  >  SRR4302534.5178749/1‑94 (MQ=60)
                              TGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAG                                                                 >  SRR4302534.2907930/1‑94 (MQ=60)
                              TGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAG                                                                 <  SRR4302534.6570381/94‑1 (MQ=60)
                               GCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGA                                                                <  SRR4302534.5608120/94‑1 (MQ=60)
                                CGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAA                                                               <  SRR4302534.1429890/94‑1 (MQ=60)
                                CGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAA                                                               >  SRR4302534.4057482/1‑94 (MQ=60)
                                 GTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAAT                                                              <  SRR4302534.3328807/94‑1 (MQ=60)
                                  TGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATA                                                             >  SRR4302534.2951353/1‑94 (MQ=60)
                                  TGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATA                                                             <  SRR4302534.3695420/94‑1 (MQ=60)
                                   GCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAA                                                            <  SRR4302534.5876636/94‑1 (MQ=60)
                                     GGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATC                                                          >  SRR4302534.2634335/1‑94 (MQ=60)
                                      GAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCA                                                         >  SRR4302534.3039173/1‑94 (MQ=60)
                                      GAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATAA                                                         >  SRR4302534.384593/1‑94 (MQ=60)
                                         AGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAAT                                                      <  SRR4302534.3919078/94‑1 (MQ=60)
                                           CACAATCACCGGCCCCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCT                                                    <  SRR4302534.3117882/94‑1 (MQ=60)
                                           CACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCT                                                    >  SRR4302534.413402/1‑94 (MQ=60)
                                             CAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGG                                                  <  SRR4302534.3454501/94‑1 (MQ=60)
                                             CAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGG                                                  <  SRR4302534.488233/94‑1 (MQ=60)
                                              AATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGC                                                 >  SRR4302534.362004/1‑94 (MQ=60)
                                               ATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCT                                                <  SRR4302534.3810414/94‑1 (MQ=60)
                                               ATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCT                                                >  SRR4302534.6207489/1‑94 (MQ=60)
                                               ATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCT                                                >  SRR4302534.3244116/1‑94 (MQ=60)
                                                 CACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTA                                              >  SRR4302534.5108709/1‑94 (MQ=60)
                                                 CACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTA                                              <  SRR4302534.436806/94‑1 (MQ=60)
                                                  ACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTAC                                             >  SRR4302534.2229941/1‑94 (MQ=60)
                                                   CCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACG                                            <  SRR4302534.1953579/94‑1 (MQ=60)
                                                   CCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACG                                            <  SRR4302534.4058852/94‑1 (MQ=60)
                                                   CCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACG                                            <  SRR4302534.2072470/94‑1 (MQ=60)
                                                    CGGCACCGCTCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGG                                           <  SRR4302534.1328396/94‑1 (MQ=60)
                                                    CGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAACCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGG                                           <  SRR4302534.2612967/94‑1 (MQ=60)
                                                    CGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGG                                           >  SRR4302534.6207790/1‑94 (MQ=60)
                                                    CGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGG                                           >  SRR4302534.2117479/1‑94 (MQ=60)
                                                    CGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGG                                           <  SRR4302534.1843248/94‑1 (MQ=60)
                                                     GGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGG                                          <  SRR4302534.5417912/94‑1 (MQ=60)
                                                     GGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGG                                          >  SRR4302534.4153388/1‑94 (MQ=60)
                                                      GCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGT                                         <  SRR4302534.3717498/94‑1 (MQ=60)
                                                       CACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTT                                        <  SRR4302534.3150614/94‑1 (MQ=60)
                                                       CACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTT                                        >  SRR4302534.3677546/1‑94 (MQ=60)
                                                       CACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTT                                        <  SRR4302534.3951119/94‑1 (MQ=60)
                                                       CACAGCGATCCACTGGCGCAGGTCGCGGATAAACTCAACCACATCACCGTCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTT                                        >  SRR4302534.4961634/1‑94 (MQ=60)
                                                        ACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTG                                       >  SRR4302534.514590/1‑94 (MQ=60)
                                                         CCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGC                                      <  SRR4302534.405011/94‑1 (MQ=60)
                                                         CAGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGC                                      >  SRR4302534.726282/1‑94 (MQ=60)
                                                          CGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCC                                     <  SRR4302534.4141156/94‑1 (MQ=60)
                                                          CGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCC                                     <  SRR4302534.4849648/94‑1 (MQ=60)
                                                            CGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGC                                   >  SRR4302534.414759/1‑94 (MQ=60)
                                                            CGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGC                                   >  SRR4302534.1866502/1‑94 (MQ=60)
                                                            CGCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGC                                   <  SRR4302534.288133/94‑1 (MQ=60)
                                                             GCTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCT                                  >  SRR4302534.1556977/1‑94 (MQ=60)
                                                              CTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTT                                 <  SRR4302534.3406450/94‑1 (MQ=60)
                                                              CTCCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTT                                 >  SRR4302534.3829420/1‑94 (MQ=60)
                                                                CCACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCC                               <  SRR4302534.108039/94‑1 (MQ=60)
                                                                 CACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACTGGTTGCCGCTTCCA                              <  SRR4302534.6367323/94‑1 (MQ=60)
                                                                 CACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCA                              >  SRR4302534.1515831/1‑94 (MQ=60)
                                                                  ACTGGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAG                             >  SRR4302534.108421/1‑94 (MQ=60)
                                                                     GGCGCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAA                          <  SRR4302534.1166682/94‑1 (MQ=60)
                                                                        GCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCC                       <  SRR4302534.1767066/94‑1 (MQ=60)
                                                                        GCAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTACAGCAAGCC                       >  SRR4302534.5297250/1‑94 (MQ=60)
                                                                         CAGGTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGGATAATCAAATCTGGCTTACGGGCTGCCGCGTCCAGCAAGCCG                      >  SRR4302534.5593153/1‑94 (MQ=60)
                                                                          AGCTCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGC                     <  SRR4302534.4525927/94‑1 (MQ=60)
                                                                             TCGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTT                  <  SRR4302534.1665937/94‑1 (MQ=60)
                                                                              CGCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTG                 <  SRR4302534.5606221/94‑1 (MQ=60)
                                                                               GCGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGC                >  SRR4302534.1973710/1‑94 (MQ=60)
                                                                                CGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCATCAAGCCGCGTTGCA               <  SRR4302534.6524823/94‑1 (MQ=60)
                                                                                CGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCA               >  SRR4302534.3825743/1‑94 (MQ=60)
                                                                                CGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCA               <  SRR4302534.3906177/94‑1 (MQ=60)
                                                                                CGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCA               <  SRR4302534.5212332/94‑1 (MQ=60)
                                                                                CGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCA               >  SRR4302534.1574716/1‑94 (MQ=60)
                                                                                CGGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCA               >  SRR4302534.6424987/1‑94 (MQ=60)
                                                                                 GGATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAG              <  SRR4302534.4326403/94‑1 (MQ=60)
                                                                                  GATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGC             <  SRR4302534.1668760/94‑1 (MQ=60)
                                                                                   ATAAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCG            <  SRR4302534.4845554/94‑1 (MQ=60)
                                                                                   ATAAACTCAACCCCACCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCG            <  SRR4302534.5843576/94‑1 (MQ=60)
                                                                                     AAACTCACCCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTT          <  SRR4302534.6266247/94‑1 (MQ=60)
                                                                                     AAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTT          <  SRR4302534.3492502/94‑1 (MQ=60)
                                                                                     AAACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTT          >  SRR4302534.5613499/1‑94 (MQ=60)
                                                                                      ACCTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTT         <  SRR4302534.944906/94‑1 (MQ=60)
                                                                                       ACTCACCCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTC        <  SRR4302534.935973/94‑1 (MQ=60)
                                                                                       ACTCAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTC        <  SRR4302534.3143872/94‑1 (MQ=60)
                                                                                          CAACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGACGCGTTGCCGCGTTTCGGC     >  SRR4302534.5549965/1‑94 (MQ=60)
                                                                                           AACCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTCGGCT    >  SRR4302534.3222830/1‑94 (MQ=60)
                                                                                             CCCCATCACGATCGGCCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTCGGCCTC  <  SRR4302534.3785272/94‑1 (MQ=60)
                                                                                             CCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTCGGCCTC  <  SRR4302534.5348672/94‑1 (MQ=60)
                                                                                             |                                                                                             
CCAGCGCGGCGATTTTGTCGCTCTCTTCGCTGCGTGCGGAAAGCACAATCACCGGCACCGCGCTCCACTGGCGCAGGTCGCGGATAAACTCAATCCCATCACCATCGGGCAGGCCGAGATCGAGAATAATCAAATCTGGCTTACGGGTTGCCGCTTCCAGCAAGCCGCGTTGCAGCGTTTCGGCCTC  >  NC_000913/720683‑720869

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑