Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
729,698 |
A→G |
H298R (CAC→CGC) |
rhsC → |
RhsC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 729,698 | 0 | A | G | 92.1%
| 192.9
/ 11.4
| 89 | H298R (CAC→CGC) | rhsC | RhsC |
| Reads supporting (aligned to +/- strand): ref base A (7/0); new base G (44/38); total (51/38) |
| Fisher's exact test for biased strand distribution p-value = 1.86e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.19e-01 |
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAC > NC_000913/729667‑729786
|
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc < 1:1255058/93‑1 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc > 2:7443319/1‑93 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc < 2:4383993/93‑1 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc < 1:7748727/93‑1 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc < 1:4487765/93‑1 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc > 1:2892595/1‑93 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc < 1:179653/93‑1 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCCCTGGGGTGCTATTGCTCGGCGccc > 1:6353279/1‑93 (MQ=11)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGccc < 2:5307092/93‑1 (MQ=31)
gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGcccc > 1:199625/1‑93 (MQ=12)
gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGcccc < 1:6212233/93‑1 (MQ=17)
gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGcccc < 2:6955996/93‑1 (MQ=17)
gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGcccc < 2:4267501/93‑1 (MQ=17)
gCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGcccc > 1:6702421/1‑93 (MQ=17)
cATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcg < 1:3602536/93‑1 (MQ=18)
cATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcg > 2:2997519/1‑93 (MQ=18)
cATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGCCCcg > 1:1811150/1‑93 (MQ=18)
aTCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGcccccc > 2:4857573/1‑91 (MQ=255)
aTCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcgc > 1:3944344/1‑93 (MQ=18)
aTCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcgc < 2:148382/93‑1 (MQ=18)
aTCCGTCTGTCTGCCGTGTGGCTGACGCAAGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGcccccc > 2:5272580/1‑91 (MQ=255)
tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcgcg > 2:2223763/1‑93 (MQ=18)
tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcgcg > 1:407013/1‑93 (MQ=18)
tCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcgcg > 1:6349455/1‑93 (MQ=33)
tCCGTCTGTCTGCCGTGTGGATGACGCACGAACCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGAACGCTATGGCTGGGCACCCcgcg > 2:6959016/1‑93 (MQ=11)
ccGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCcgccg > 2:1448983/1‑91 (MQ=16)
ccGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCgcgg > 2:768674/1‑93 (MQ=18)
ccGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCgcgg < 2:6131742/93‑1 (MQ=21)
ccGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGcccccggg > 2:4122310/1‑89 (MQ=17)
cGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCgcggc > 1:5895160/1‑93 (MQ=18)
gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg > 1:5865212/1‑93 (MQ=18)
gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg > 2:8615544/1‑93 (MQ=18)
tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcgg > 2:2026349/1‑92 (MQ=18)
tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa > 2:772491/1‑93 (MQ=18)
tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa > 1:8381420/1‑93 (MQ=18)
ctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGaa < 1:5589019/93‑1 (MQ=21)
tgtgtgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc > 1:8619425/1‑93 (MQ=255)
tgtctgCCGTGTGGCTGACTCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc < 1:4149649/93‑1 (MQ=16)
tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc < 2:239535/93‑1 (MQ=21)
tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc < 2:8444449/93‑1 (MQ=21)
tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGAAGCCCCGCGGCGAAc > 1:2197660/1‑93 (MQ=255)
tgtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc > 1:1864671/1‑93 (MQ=33)
gtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACt < 2:6844106/93‑1 (MQ=21)
gtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACt < 1:6379684/93‑1 (MQ=21)
gtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACt < 2:4943371/93‑1 (MQ=21)
gtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACt > 1:386164/1‑93 (MQ=18)
gtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACt < 2:3253575/93‑1 (MQ=18)
gtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACCGCCCGCGGCGAACt > 1:544647/1‑93 (MQ=11)
tctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGGGGCGAACTg > 1:4054479/1‑93 (MQ=16)
tctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTg > 2:7409184/1‑93 (MQ=18)
ctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTgg < 1:1698134/93‑1 (MQ=21)
ctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTgg < 2:4193934/93‑1 (MQ=21)
ctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTgg < 2:179357/93‑1 (MQ=21)
tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc < 2:5100225/93‑1 (MQ=18)
tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCCGCGAACTggc > 1:2637333/1‑93 (MQ=255)
gctgtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcg < 2:7232815/90‑1 (MQ=16)
gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcg < 2:3145446/93‑1 (MQ=21)
gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcg < 2:2140261/93‑1 (MQ=21)
gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCCGCGAACTggcg > 1:7909317/1‑93 (MQ=255)
gCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGCCGCCCAGCGGCTCACCggcg > 1:3594923/1‑93 (MQ=11)
cGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcggg > 2:5683625/1‑92 (MQ=16)
cGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcggc < 1:3489346/93‑1 (MQ=25)
cGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcggc < 2:1734079/93‑1 (MQ=21)
cGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcggc < 2:7546251/93‑1 (MQ=21)
gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcgggg > 2:3222062/1‑91 (MQ=16)
gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGgcggcg > 1:7205433/1‑93 (MQ=25)
gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGgcggcg > 1:4101435/1‑93 (MQ=25)
gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTAACTGCCGC‑GTCGCTGGTGCGCTATGGCTGGACGCCCCGCACCGAAATGgcggcg > 2:824767/1‑93 (MQ=11)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCTGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGgggcgg > 2:6906166/1‑93 (MQ=11)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGCCCCGCGGCGAACTGGgggcgg > 1:6390913/1‑93 (MQ=11)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGCCGCCCCGCGGCGAACTGGcggcgg > 1:5985633/1‑93 (MQ=255)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcgg < 2:1014972/93‑1 (MQ=255)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcgg > 1:7233825/1‑93 (MQ=255)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcgg > 1:4336387/1‑93 (MQ=255)
tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGCGCGCTATGGCTGGAAGCCCCGCGGCGAACTGGcggcgg > 2:6906164/1‑93 (MQ=255)
gtgtCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgt < 2:8407187/93‑1 (MQ=255)
gtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGGCCCCTGGGGCCCTTTGGCGGGACGCCCCCCCGCGAACCgggggggg > 2:6315717/1‑93 (MQ=2)
gtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgt < 1:1133106/93‑1 (MQ=255)
tgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtg > 1:6772561/1‑93 (MQ=37)
ggCTGACGCGCGACCCGGAATCCCCGGAGAATTTCCCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtgt < 1:3965454/93‑1 (MQ=255)
ggCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGAGACCCCCGGCGAACCGGgggcggggg > 1:4845389/1‑90 (MQ=11)
ggCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtgt < 1:3285826/93‑1 (MQ=255)
gCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTa > 1:971920/1‑93 (MQ=255)
gCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTa < 2:3224987/93‑1 (MQ=255)
cTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTAt < 2:4527609/93‑1 (MQ=255)
cTGACGCGCGACCAGGAATACCCGGAGAAGTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTAt < 1:8642093/93‑1 (MQ=255)
tGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATg < 1:6919786/93‑1 (MQ=255)
gACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGGCGCCCCGCGGCGAACTGGCGGCGGTGTATGa > 1:6202191/1‑93 (MQ=255)
gACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGa < 1:7972144/93‑1 (MQ=37)
gACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGa > 1:2261750/1‑93 (MQ=255)
gACGCGCGACCCGGAATACCCGGAGAATTTACCTACCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGa > 2:5497646/1‑93 (MQ=255)
gcgcgcgACCCGGAATACCCGGAGAATTTCCCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc < 1:3885556/92‑1 (MQ=255)
aCGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc < 2:47633/93‑1 (MQ=255)
aCGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc < 2:877551/93‑1 (MQ=255)
aCGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCCGCGAACCGGGGGCGGTGGATGAc > 2:5020115/1‑93 (MQ=11)
aCGCGCGACCCGGAATACCCGGAGAATGTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc < 1:6293941/93‑1 (MQ=255)
|
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC‑GCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAC > NC_000913/729667‑729786
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCA > NC_000913/729605‑729790
|
GGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCG > SRR4302541.2412586/1‑94 (MQ=0)
GGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCA > SRR4302541.1406591/1‑94 (MQ=0)
GGCGGAACCGTCCGCTTGTCCTGGTACCCTGCCGGGTCACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCCC < SRR4302541.5100457/94‑1 (MQ=0)
GACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCAC < SRR4302541.8657162/94‑1 (MQ=0)
ACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGGCGCACG > SRR4302541.8385646/1‑94 (MQ=0)
ACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACG > SRR4302541.2660523/1‑94 (MQ=0)
ACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACG < SRR4302541.497684/94‑1 (MQ=0)
CGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGA > SRR4302541.1588732/1‑94 (MQ=0)
CGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGA > SRR4302541.4480755/1‑94 (MQ=0)
GGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGAC > SRR4302541.6092743/1‑94 (MQ=0)
GAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACC > SRR4302541.1589438/1‑94 (MQ=0)
GAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACC > SRR4302541.5753405/1‑94 (MQ=0)
GAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACC > SRR4302541.7101097/1‑94 (MQ=0)
GAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCAGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACC < SRR4302541.707714/94‑1 (MQ=0)
AACCGTCCGCTTTTCCTGATCCCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCC < SRR4302541.5417642/94‑1 (MQ=0)
AACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCC > SRR4302541.7102627/1‑94 (MQ=0)
ACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCG < SRR4302541.3744284/94‑1 (MQ=0)
ACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCG > SRR4302541.5549984/1‑94 (MQ=0)
ACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCG < SRR4302541.3885773/94‑1 (MQ=0)
CCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTTTGTCTGCCGTGTGGCTGACGCACGACCCGG > SRR4302541.6217880/1‑94 (MQ=0)
CGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGA > SRR4302541.4922576/1‑94 (MQ=0)
CGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGA > SRR4302541.6478743/1‑94 (MQ=0)
CGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGA < SRR4302541.7539128/94‑1 (MQ=0)
GTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAA > SRR4302541.3606731/1‑94 (MQ=0)
GTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAA > SRR4302541.1233378/1‑94 (MQ=0)
GTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAA > SRR4302541.3597584/1‑94 (MQ=0)
GTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAA < SRR4302541.4326537/94‑1 (MQ=0)
GTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGCCTGTCTGCCGTGAGGCTGACGCACaccccggac > SRR4302541.7360224/1‑85 (MQ=0)
TCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAAT > SRR4302541.5883433/1‑94 (MQ=0)
CCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATA < SRR4302541.6489833/94‑1 (MQ=0)
CCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATA > SRR4302541.4264483/1‑94 (MQ=0)
CCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATA > SRR4302541.145738/1‑94 (MQ=0)
CCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATA < SRR4302541.8278380/94‑1 (MQ=0)
CGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATAC > SRR4302541.1227240/1‑94 (MQ=0)
CGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATAC > SRR4302541.3167386/1‑94 (MQ=0)
CGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATAC < SRR4302541.5611687/94‑1 (MQ=0)
CGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATAC > SRR4302541.6996468/1‑94 (MQ=0)
GCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACC < SRR4302541.3672959/94‑1 (MQ=0)
TTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCG < SRR4302541.7365048/94‑1 (MQ=0)
TTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCG > SRR4302541.5271112/1‑94 (MQ=0)
TTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGG < SRR4302541.3845644/94‑1 (MQ=0)
TTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGG > SRR4302541.372346/1‑94 (MQ=0)
TTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGA > SRR4302541.7395089/1‑94 (MQ=0)
TTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGA > SRR4302541.2149810/1‑94 (MQ=0)
CCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGTCCCGGAATACCCGGAGA > SRR4302541.7890051/1‑94 (MQ=0)
CCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGA > SRR4302541.6299464/1‑94 (MQ=0)
CTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAA > SRR4302541.2586393/1‑94 (MQ=0)
CTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAA > SRR4302541.8521566/1‑94 (MQ=0)
CTGATACCCTGCCGGGTTACACCGAATATGGCCGGGAAAACGGCATCCGTCTGTCTGACGTGTGTCTGAAGCACGACCCGGAATACACGGAGAA > SRR4302541.255432/1‑94 (MQ=0)
TGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAAT > SRR4302541.5423117/1‑94 (MQ=0)
TGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAAT > SRR4302541.415950/1‑94 (MQ=0)
atactgtgccgggttcgcccgcagATGGCCGGTACAACGGCATCCCTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTT < SRR4302541.444969/70‑1 (MQ=0)
ATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTT > SRR4302541.2401286/1‑94 (MQ=0)
ATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTT > SRR4302541.8249517/1‑94 (MQ=0)
ACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAA‑TTACC < SRR4302541.6138158/94‑1 (MQ=0)
ACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTAC > SRR4302541.901674/1‑94 (MQ=0)
ACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTAC < SRR4302541.7034532/94‑1 (MQ=0)
CCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACC > SRR4302541.3502459/1‑94 (MQ=0)
CCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACC > SRR4302541.4917249/1‑94 (MQ=0)
CCTGCCGGGTTACACCGAATATGGCCGGGACAACGGTATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCT < SRR4302541.6084273/94‑1 (MQ=0)
CCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCT > SRR4302541.4324053/1‑94 (MQ=0)
CCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCT > SRR4302541.8706472/1‑94 (MQ=0)
CTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACTACCCGGAATACCCGGAGAATTTACCTG < SRR4302541.1790060/94‑1 (MQ=0)
CTGCCGGGTTACACCGAATAGGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGCGGCACGACCCGGAATACCCGGAGAATTTACCTG < SRR4302541.3387471/94‑1 (MQ=0)
TGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGC > SRR4302541.4189134/1‑94 (MQ=0)
TGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGC > SRR4302541.4189135/1‑94 (MQ=0)
GCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCC < SRR4302541.710579/94‑1 (MQ=0)
CCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCG < SRR4302541.7684627/94‑1 (MQ=0)
CGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGC > SRR4302541.1511926/1‑94 (MQ=0)
CGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC > SRR4302541.240004/1‑94 (MQ=0)
CGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGC > SRR4302541.8322279/1‑94 (MQ=0)
ggagtacaccgtatatgcccgagacatgGGCATCCTTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATTCCCGGAGAATTTACCTGCCGCG < SRR4302541.3684127/66‑1 (MQ=0)
GGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCG > SRR4302541.3973831/1‑94 (MQ=0)
GGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGC < SRR4302541.2754687/94‑1 (MQ=0)
GTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCC < SRR4302541.2423517/94‑1 (MQ=0)
TACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGC > SRR4302541.7695792/1‑94 (MQ=0)
TACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGC > SRR4302541.1146773/1‑94 (MQ=0)
ACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCT > SRR4302541.7243089/1‑94 (MQ=0)
ACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCT < SRR4302541.1757409/94‑1 (MQ=0)
CACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTG > SRR4302541.781842/1‑94 (MQ=0)
CCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGT > SRR4302541.7905042/1‑94 (MQ=0)
CGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTG > SRR4302541.1913846/1‑94 (MQ=0)
CGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTG > SRR4302541.1190548/1‑94 (MQ=0)
CGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTG > SRR4302541.1206352/1‑94 (MQ=0)
GAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCAGCCGCGCCGCTGGTGG > SRR4302541.1663819/1‑94 (MQ=0)
aatctgagcgggcgAACGGCATCTGTTTGTCTGCGGTGTGGCTGACGCACGACCCGGAATACCCGGAAAATTTACCTGCCGCGCCGCTGGTGCG < SRR4302541.5437831/80‑1 (MQ=0)
AATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCG > SRR4302541.3149757/1‑94 (MQ=0)
ATATGGCCGGGACAACGGCATCAGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGC > SRR4302541.1766254/1‑94 (MQ=0)
TATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCT > SRR4302541.700301/1‑94 (MQ=0)
TATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCT > SRR4302541.7881089/1‑94 (MQ=0)
TGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTAT > SRR4302541.2895289/1‑94 (MQ=0)
GGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCcccggggcgccttg > SRR4302541.6472261/1‑80 (MQ=0)
GCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGG < SRR4302541.3997979/94‑1 (MQ=0)
GCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGG < SRR4302541.4018903/94‑1 (MQ=0)
CCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGC > SRR4302541.8425846/1‑94 (MQ=0)
CCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGC > SRR4302541.8227494/1‑94 (MQ=0)
CCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGC < SRR4302541.2218264/94‑1 (MQ=0)
CCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGC > SRR4302541.3801415/1‑94 (MQ=0)
CGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCT > SRR4302541.3441244/1‑94 (MQ=0)
CGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCT > SRR4302541.8440637/1‑94 (MQ=0)
CGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCT > SRR4302541.7936294/1‑94 (MQ=0)
GGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGGGCCGCTGGTGCGCTATGGCTG > SRR4302541.4333606/1‑94 (MQ=0)
GGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTG > SRR4302541.4066220/1‑94 (MQ=0)
GGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTG > SRR4302541.2700031/1‑94 (MQ=0)
GGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGG > SRR4302541.5513713/1‑94 (MQ=0)
GGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGG < SRR4302541.6674900/94‑1 (MQ=0)
GACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGA < SRR4302541.8433052/94‑1 (MQ=0)
GACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGA > SRR4302541.4925990/1‑94 (MQ=0)
GACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGA > SRR4302541.4085643/1‑94 (MQ=0)
GACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGA < SRR4302541.757338/94‑1 (MQ=0)
GACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGA > SRR4302541.1303200/1‑94 (MQ=0)
ACAACGGCATCCTTCTGTCTGCCGTGTGACTGACGCACGACCCGGAATACCCGGAGAATTTCCCTGCCGCGCCGCTGGTGCGCTATGGCTGGAC < SRR4302541.8638260/94‑1 (MQ=0)
ACAACGGCATCCGTCTTTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTCCCTGCCGCGCCGCTGGTGCGCTATGGCTGGAC < SRR4302541.6300024/94‑1 (MQ=0)
ACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGTC > SRR4302541.476945/1‑94 (MQ=0)
ACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGAC < SRR4302541.8742619/94‑1 (MQ=0)
ACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGAC < SRR4302541.5472187/94‑1 (MQ=0)
CAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCG > SRR4302541.6081321/1‑94 (MQ=0)
CAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACG < SRR4302541.379841/94‑1 (MQ=0)
AACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGC < SRR4302541.8130160/94‑1 (MQ=0)
CGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCcctggggtgctattgctcggcgccc > SRR4302541.6418229/1‑69 (MQ=0)
CGGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCC > SRR4302541.2921666/1‑94 (MQ=0)
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCC > SRR4302541.201130/1‑94 (MQ=0)
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCC < SRR4302541.181000/94‑1 (MQ=0)
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCC < SRR4302541.4533000/94‑1 (MQ=0)
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCC < SRR4302541.1267511/94‑1 (MQ=0)
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCC < SRR4302541.7831172/94‑1 (MQ=0)
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCC > SRR4302541.6772763/1‑94 (MQ=0)
GCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCG < SRR4302541.6275721/94‑1 (MQ=3)
GCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCG > SRR4302541.1828759/1‑94 (MQ=3)
CATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGC > SRR4302541.3983578/1‑94 (MQ=5)
CATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGC < SRR4302541.3639063/94‑1 (MQ=5)
ATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCG > SRR4302541.410786/1‑94 (MQ=8)
ATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCG > SRR4302541.6414359/1‑94 (MQ=8)
CCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGC > SRR4302541.5955150/1‑94 (MQ=8)
CGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCG > SRR4302541.5924879/1‑94 (MQ=8)
GTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGA > SRR4302541.8472203/1‑94 (MQ=8)
CTGTGTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAC > SRR4302541.8711835/1‑94 (MQ=7)
CTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAC < SRR4302541.5646229/94‑1 (MQ=8)
CTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGAAGCCCCGCGGCGAAC > SRR4302541.2218924/1‑94 (MQ=7)
CTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAC > SRR4302541.1882645/1‑94 (MQ=8)
TGTCTGCCGTGTGGCTGACTCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACT < SRR4302541.4190674/94‑1 (MQ=7)
TGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACT > SRR4302541.389729/1‑94 (MQ=8)
TGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACCGCCCGCGGCGAACT > SRR4302541.549782/1‑94 (MQ=7)
GTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGGGGCGAACTG > SRR4302541.4094483/1‑94 (MQ=7)
GTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTG < SRR4302541.6444858/94‑1 (MQ=8)
CTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGC < SRR4302541.1714781/94‑1 (MQ=8)
CTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCCGCGAACTGGC > SRR4302541.2663620/1‑94 (MQ=7)
TGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCCGCGAACTGGCG > SRR4302541.7996336/1‑94 (MQ=7)
TGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGCCGCCCAGCGGCtcaccggcg > SRR4302541.3631373/1‑85 (MQ=0)
CGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCG > SRR4302541.4141920/1‑94 (MQ=13)
CGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCG < SRR4302541.3524290/94‑1 (MQ=13)
CGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCG > SRR4302541.7282298/1‑94 (MQ=13)
GTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCGCGGCGAACTGGGGGCGG > SRR4302541.6456156/1‑94 (MQ=9)
GTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGCCGCCCCGCGGCGAACTGGCGGCGG > SRR4302541.6046918/1‑94 (MQ=19)
GTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGG > SRR4302541.7310986/1‑94 (MQ=20)
GTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGG > SRR4302541.4379685/1‑94 (MQ=20)
GTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTG < SRR4302541.1143827/94‑1 (MQ=25)
GTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTG > SRR4302541.6844991/1‑94 (MQ=25)
GGCTGACGCGCGACCCGGAATCCCCGGAGAATTTCCCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTA < SRR4302541.4004825/94‑1 (MQ=23)
GGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTA < SRR4302541.3318934/94‑1 (MQ=25)
GGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTA > SRR4302541.981039/1‑94 (MQ=25)
CTGACGCGCGACCAGGAATACCCGGAGAAGTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATG < SRR4302541.8734664/94‑1 (MQ=23)
TGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCGCGGCGAACTGGCGGCGGTGTATGA > SRR4302541.6265569/1‑94 (MQ=24)
TGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGA > SRR4302541.2283589/1‑94 (MQ=25)
TGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGA < SRR4302541.6993628/94‑1 (MQ=25)
GACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAC < SRR4302541.8059991/94‑1 (MQ=25)
ACGCGCGACCCGGAATACCCGGAGAATGTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACC < SRR4302541.6358252/94‑1 (MQ=24)
GCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGC > SRR4302541.5235590/1‑94 (MQ=28)
CGCGACCCGGAATACCCGGAGAATTTCCCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCA < SRR4302541.1283828/94‑1 (MQ=30)
CGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCA < SRR4302541.2985989/94‑1 (MQ=31)
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GGACGGAACCGTCCGCTTTTCCTGATACCCTGCCGGGTTACACCGAATATGGCCGGGACAACGGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCA > NC_000913/729605‑729790
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
