Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
753,753 |
T→C |
intergenic (‑62/‑647) |
gltA ← / → sdhC |
citrate synthase/succinate dehydrogenase cytochrome b556 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 753,753 | 0 | T | C | 100.0%
| 759.7
/ NA
| 216 | intergenic (‑62/‑647) | gltA/sdhC | citrate synthase/succinate dehydrogenase cytochrome b556 |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (98/118); total (98/118) |
Only 100 of 219 total aligned reads displayed.
AGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTA > NC_000913/753663‑753841
|
aGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCa > 2:6395962/1‑93 (MQ=255)
gggTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCaa > 1:892811/1‑93 (MQ=255)
ggTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAAc < 2:2261880/93‑1 (MQ=255)
ggTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAAc < 1:5749043/93‑1 (MQ=255)
gTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACTCCAAcc < 2:5720853/93‑1 (MQ=255)
tGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCt > 2:2143373/1‑93 (MQ=255)
tGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCt < 1:1820578/93‑1 (MQ=255)
tGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCt < 2:2552314/93‑1 (MQ=255)
tGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCt > 1:5208954/1‑93 (MQ=255)
ggAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCt < 1:1433761/92‑1 (MQ=255)
gAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTg < 1:2957906/93‑1 (MQ=255)
gTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGc < 2:838361/93‑1 (MQ=255)
gTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGc > 2:1913895/1‑93 (MQ=255)
gTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGc < 2:4401950/93‑1 (MQ=255)
gTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGc > 1:1595361/1‑93 (MQ=255)
gTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGc > 1:2877366/1‑93 (MQ=255)
ttttGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCt < 1:6146201/93‑1 (MQ=255)
tttGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCtt < 1:3089212/93‑1 (MQ=255)
tttGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCtt > 1:2669829/1‑93 (MQ=255)
tttGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCtt < 2:4084728/93‑1 (MQ=255)
tttGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCtt < 2:4261483/93‑1 (MQ=255)
ttGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCttt < 1:6123831/93‑1 (MQ=255)
gCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTAc < 2:1705483/93‑1 (MQ=255)
cTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTAcc < 2:2460180/93‑1 (MQ=255)
ttttGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTAccc < 1:3168447/93‑1 (MQ=255)
tttGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCg > 2:343806/1‑93 (MQ=255)
tGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGtt < 2:5119701/93‑1 (MQ=255)
tGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGtt < 2:3947571/93‑1 (MQ=255)
aTCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGttttt > 1:2833598/1‑93 (MQ=255)
cAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTa < 1:71008/93‑1 (MQ=255)
cAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTa < 2:4123515/93‑1 (MQ=255)
cAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTa < 2:2789777/93‑1 (MQ=255)
gCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTact < 2:6246240/93‑3 (MQ=255)
ttAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCt < 1:5705745/93‑1 (MQ=255)
tAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTc < 1:439450/93‑1 (MQ=255)
tAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTc < 1:4080089/93‑1 (MQ=255)
tAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTc < 1:6023365/93‑1 (MQ=255)
aaGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTcg < 2:4868121/93‑1 (MQ=255)
aGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTcgc > 1:1895149/1‑93 (MQ=255)
ggTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTcgcc < 2:5803946/93‑1 (MQ=255)
tcCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGctc > 2:4456066/1‑93 (MQ=255)
ccTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGctct > 1:3819053/1‑93 (MQ=255)
ccTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGctct > 1:5909395/1‑93 (MQ=255)
ccTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGctct > 1:451589/1‑93 (MQ=255)
ccTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGctct > 2:4770125/1‑93 (MQ=255)
cTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCtg > 1:4224214/1‑93 (MQ=255)
ttAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCtgt > 1:4883961/1‑93 (MQ=255)
ttAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCtgt > 1:3908350/1‑93 (MQ=255)
aGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGa > 2:822027/1‑93 (MQ=255)
aGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGa > 2:5515259/1‑93 (MQ=255)
gcgcCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGaa > 2:941238/1‑93 (MQ=255)
cgcCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGaaa < 1:1146501/93‑1 (MQ=255)
gcCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAag < 2:1434540/93‑1 (MQ=255)
ccTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAaga > 1:3434728/1‑93 (MQ=255)
ccTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTCTGAAaga < 1:6359134/93‑1 (MQ=255)
cTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAagag < 1:4123308/93‑1 (MQ=255)
cTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAagag > 2:759190/1‑93 (MQ=255)
cTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAagag < 1:6144209/93‑1 (MQ=255)
cTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAagag < 2:602186/93‑1 (MQ=255)
cTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAagag > 2:2028780/1‑93 (MQ=255)
ttATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAgg > 2:1001642/1‑93 (MQ=255)
ttATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAgg > 2:6121190/1‑93 (MQ=255)
aTTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAgggg < 1:2473706/93‑1 (MQ=255)
aTTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAgggg > 2:2989173/1‑93 (MQ=255)
ttGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGa > 1:4976248/1‑93 (MQ=255)
ttGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGCGa > 2:899013/1‑93 (MQ=255)
tGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGaa < 1:4003545/93‑1 (MQ=255)
cGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGaaaa > 1:4316181/1‑93 (MQ=255)
gTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAc > 1:1037328/1‑93 (MQ=255)
gTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAc < 2:1196442/93‑1 (MQ=255)
gTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAc > 2:1496145/1‑93 (MQ=255)
gTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAc > 1:85925/1‑93 (MQ=255)
aGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTg > 2:1589182/1‑93 (MQ=255)
aGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTg < 2:3219745/93‑1 (MQ=255)
gACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTgg < 2:2362421/93‑1 (MQ=255)
aCTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTggg > 1:1302146/1‑93 (MQ=255)
aCTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTggg > 1:186184/1‑93 (MQ=255)
aCTGCCGGAACTTAAATTTGCCTTAGCCCACCAACCAGGCTTTACCCGTTTTTTATTAGGCACGCCGCTCTGAGAAAGAGGGGAAAACCTggg < 2:6475727/93‑1 (MQ=255)
cTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGt < 1:3483106/93‑1 (MQ=255)
cTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAACTgggg > 2:3517870/1‑92 (MQ=255)
tGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTa < 2:2643250/93‑1 (MQ=255)
gCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTAc < 2:4604596/93‑1 (MQ=255)
ggAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACaga < 2:3619784/93‑1 (MQ=255)
gAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACagag > 1:5622293/1‑93 (MQ=255)
aaCTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGc > 1:3553163/1‑93 (MQ=255)
aaCTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGc > 2:3925104/1‑93 (MQ=255)
aCTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGct < 1:4587790/93‑1 (MQ=255)
cTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGcgc > 2:5439391/1‑91 (MQ=255)
ttAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGctct < 2:2746337/93‑1 (MQ=255)
tAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTg < 1:243236/93‑1 (MQ=255)
tAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTg > 1:888649/1‑93 (MQ=255)
aaTTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTggg < 2:4332590/93‑1 (MQ=255)
aTTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGgc > 1:5130647/1‑93 (MQ=255)
tGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCt < 1:5521744/93‑1 (MQ=255)
gCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCtt < 1:3609502/93‑1 (MQ=255)
ccTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTg > 2:3665828/1‑93 (MQ=255)
tCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAg > 1:3320780/1‑93 (MQ=255)
tCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAg < 2:1450485/93‑1 (MQ=255)
gCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGt < 1:1319035/93‑1 (MQ=255)
gCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGt > 1:5065712/1‑93 (MQ=255)
|
AGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTA > NC_000913/753663‑753841
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGA > NC_000913/753662‑753846
|
GAGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCA < SRR4302534.3266607/94‑1 (MQ=60)
GAGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCA > SRR4302534.1139153/1‑94 (MQ=60)
GAGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCA < SRR4302534.817621/94‑1 (MQ=60)
AGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAA > SRR4302534.915429/1‑94 (MQ=60)
GGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACC < SRR4302534.5904928/94‑1 (MQ=60)
GTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCT < SRR4302534.968877/94‑1 (MQ=60)
GTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCT > SRR4302534.5349529/1‑94 (MQ=60)
GTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCT > SRR4302534.1329002/1‑94 (MQ=60)
TGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTG < SRR4302534.1867894/94‑1 (MQ=60)
GGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTG < SRR4302534.1471490/94‑1 (MQ=60)
GAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGG < SRR4302534.3035422/94‑1 (MQ=60)
AGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGC > SRR4302534.2952899/1‑94 (MQ=60)
AGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGC > SRR4302534.1637053/1‑94 (MQ=60)
GTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCT < SRR4302534.3226878/94‑1 (MQ=60)
TTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTT > SRR4302534.2740394/1‑94 (MQ=60)
TTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTT < SRR4302534.6313342/94‑1 (MQ=60)
TTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTT < SRR4302534.6313343/94‑1 (MQ=60)
TTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTT < SRR4302534.3170433/94‑1 (MQ=60)
TTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTT < SRR4302534.1942083/94‑1 (MQ=60)
TTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTT > SRR4302534.5871034/1‑94 (MQ=60)
TTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTA < SRR4302534.6290396/94‑1 (MQ=60)
TTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTA < SRR4302534.1626473/94‑1 (MQ=60)
GCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACC > SRR4302534.2734184/1‑94 (MQ=60)
CTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCC > SRR4302534.6183278/1‑94 (MQ=60)
CTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCC > SRR4302534.4895677/1‑94 (MQ=60)
TTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCG < SRR4302534.3252017/94‑1 (MQ=60)
TTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGT < SRR4302534.3911026/94‑1 (MQ=60)
TTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGT < SRR4302534.5260954/94‑1 (MQ=60)
TTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTT < SRR4302534.5844502/94‑1 (MQ=60)
TTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTT < SRR4302534.6194872/94‑1 (MQ=60)
TATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTT > SRR4302534.5708318/1‑94 (MQ=60)
TATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTT > SRR4302534.2908050/1‑94 (MQ=60)
TATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTT > SRR4302534.3222263/1‑94 (MQ=60)
ATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTT > SRR4302534.412733/1‑94 (MQ=60)
CAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTAT < SRR4302534.72950/94‑1 (MQ=60)
CAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTAT > SRR4302534.1352877/1‑94 (MQ=60)
CATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGG > SRR4302534.6193125/1‑94 (MQ=60)
TTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTC < SRR4302534.5860311/94‑1 (MQ=60)
TAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCG < SRR4302534.450626/94‑1 (MQ=60)
TAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCG < SRR4302534.4189610/94‑1 (MQ=60)
TAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCG < SRR4302534.6187063/94‑1 (MQ=60)
AAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGC > SRR4302534.889075/1‑94 (MQ=60)
AAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGC > SRR4302534.1944586/1‑94 (MQ=60)
AAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGC > SRR4302534.4264713/1‑94 (MQ=60)
AGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCC > SRR4302534.3435719/1‑94 (MQ=60)
GTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGC > SRR4302534.5566081/1‑94 (MQ=60)
TCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCT > SRR4302534.463028/1‑94 (MQ=60)
TCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCT > SRR4302534.4303441/1‑94 (MQ=60)
TCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCT > SRR4302534.6069857/1‑94 (MQ=60)
TCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCT > SRR4302534.3921661/1‑94 (MQ=60)
CCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTG > SRR4302534.4338076/1‑94 (MQ=60)
CCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTG < SRR4302534.5053215/94‑1 (MQ=60)
CTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGT > SRR4302534.5016416/1‑94 (MQ=60)
CTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGT > SRR4302534.4013164/1‑94 (MQ=60)
TTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTG < SRR4302534.731259/94‑1 (MQ=60)
TTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTG < SRR4302534.4223914/94‑1 (MQ=60)
TAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGA < SRR4302534.5134529/94‑1 (MQ=60)
CGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAG < SRR4302534.5938733/94‑1 (MQ=60)
CGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAG < SRR4302534.1176541/94‑1 (MQ=60)
GCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGA > SRR4302534.3527023/1‑94 (MQ=60)
CCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAG > SRR4302534.56022/1‑94 (MQ=60)
CCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTCTGAAAGAG < SRR4302534.6530872/94‑1 (MQ=60)
CTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGG < SRR4302534.6311307/94‑1 (MQ=60)
CTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGG < SRR4302534.4234296/94‑1 (MQ=60)
TTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGG < SRR4302534.3862064/94‑1 (MQ=60)
ATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGA < SRR4302534.2539439/94‑1 (MQ=60)
ATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGA > SRR4302534.5110952/1‑94 (MQ=60)
ATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGA > SRR4302534.2437866/1‑94 (MQ=60)
TGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAA < SRR4302534.4110742/94‑1 (MQ=60)
GCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAA > SRR4302534.4433064/1‑94 (MQ=60)
GCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAA < SRR4302534.190051/94‑1 (MQ=60)
CGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAC > SRR4302534.88223/1‑94 (MQ=60)
CGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAAC > SRR4302534.1064101/1‑94 (MQ=60)
TAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCT > SRR4302534.800818/1‑94 (MQ=60)
TAAGACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCT > SRR4302534.91530/1‑94 (MQ=60)
AGACTGCCGGAACTTAAATTTGCCTTCGCACACCCACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGGAAACCTGG > SRR4302534.6302676/1‑94 (MQ=60)
GACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGG > SRR4302534.1336488/1‑94 (MQ=60)
GACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGG > SRR4302534.191072/1‑94 (MQ=60)
ACTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGT < SRR4302534.4037365/94‑1 (MQ=60)
CTGCCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTA < SRR4302534.3576739/94‑1 (MQ=60)
CCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAG > SRR4302534.5321977/1‑94 (MQ=60)
CCGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAG < SRR4302534.1710659/94‑1 (MQ=60)
CGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGA > SRR4302534.2909621/1‑94 (MQ=60)
CGGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGA > SRR4302534.3588035/1‑94 (MQ=60)
GGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAG < SRR4302534.4429325/94‑1 (MQ=60)
GGAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAG > SRR4302534.5774431/1‑94 (MQ=60)
GGAACTTAAATGTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAG < SRR4302534.3992934/94‑1 (MQ=60)
GAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGCGC > SRR4302534.2777976/1‑94 (MQ=60)
GAACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGC > SRR4302534.3648719/1‑94 (MQ=60)
AACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCT < SRR4302534.6408619/94‑1 (MQ=60)
ACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTC < SRR4302534.4712289/94‑1 (MQ=60)
ACTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTC < SRR4302534.3702578/94‑1 (MQ=60)
CTTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCT < SRR4302534.3537164/94‑1 (MQ=60)
ATTAAATTTGCCTTCCCCCCCCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCT < SRR4302534.1363946/94‑1 (MQ=60)
TTAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTG > SRR4302534.911152/1‑94 (MQ=60)
TAAATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGG < SRR4302534.249598/94‑1 (MQ=60)
AATTTGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGC > SRR4302534.5269163/1‑94 (MQ=60)
TGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTT < SRR4302534.5670739/94‑1 (MQ=60)
TGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTT < SRR4302534.4640333/94‑1 (MQ=60)
TGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTT < SRR4302534.4503402/94‑1 (MQ=60)
TGCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTT < SRR4302534.3073638/94‑1 (MQ=60)
GCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTG < SRR4302534.267579/94‑1 (MQ=60)
GCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTG > SRR4302534.482966/1‑94 (MQ=60)
GCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTG < SRR4302534.3706565/94‑1 (MQ=60)
GCCTTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTG > SRR4302534.3363096/1‑94 (MQ=60)
TTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAG < SRR4302534.3034172/94‑1 (MQ=60)
GTCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAG > SRR4302534.3409577/1‑94 (MQ=60)
TCGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGG < SRR4302534.1865477/94‑1 (MQ=60)
CGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGT > SRR4302534.2528386/1‑94 (MQ=60)
CGCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGT > SRR4302534.5202481/1‑94 (MQ=60)
GCACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTA < SRR4302534.1353815/94‑1 (MQ=60)
CACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAA < SRR4302534.671564/94‑1 (MQ=60)
CACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAA < SRR4302534.4610092/94‑1 (MQ=60)
ACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAA > SRR4302534.1861770/1‑94 (MQ=60)
ACACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAA > SRR4302534.2628078/1‑94 (MQ=60)
CACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAG > SRR4302534.4784526/1‑94 (MQ=60)
CACCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAG > SRR4302534.4646050/1‑94 (MQ=60)
CCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGA < SRR4302534.2103253/94‑1 (MQ=60)
CCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGA < SRR4302534.108691/94‑1 (MQ=60)
|
GAGGGTGAGTTTTGCTTTTGTATCAGCCATTTAAGGTCTCCTTAGCGCCTTATTGCGTAAGACTGCCGGAACTTAAATTTGCCTTCGCACATCAACCTGGCTTTACCCGTTTTTTATTTGGCTCGCCGCTCTGTGAAAGAGGGGAAAACCTGGGTACAGAGCTCTGGGCGCTTGCAGGTAAAGGA > NC_000913/753662‑753846
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
