Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 756,426 A→G S433G (AGC→GGC)  sdhA → succinate dehydrogenase flavoprotein subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913756,4260AG100.0% 894.1 / NA 258S433G (AGC→GGC) sdhAsuccinate dehydrogenase flavoprotein subunit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (105/153);  total (105/153)

Only 100 of 266 total aligned reads displayed.

AACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCAGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCG  >  NC_000913/756336‑756515
                                                                                          |                                                                                         
aaCTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGc                                                                                         >  1:3941676/1‑93 (MQ=255)
 aCTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCg                                                                                        >  1:5411946/1‑93 (MQ=255)
  cTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGa                                                                                       >  2:6163705/1‑93 (MQ=255)
   tCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAg                                                                                      >  2:3546985/1‑93 (MQ=255)
    cGCTGCTGGGCCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGt                                                                                     <  2:4086560/93‑1 (MQ=255)
    cGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGt                                                                                     <  1:146212/93‑1 (MQ=255)
     gctgctGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTc                                                                                    <  1:3700725/93‑1 (MQ=255)
     gctgctGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTc                                                                                    >  1:2646120/1‑93 (MQ=255)
      ctgctgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCt                                                                                   <  1:175546/93‑1 (MQ=255)
      ctgctgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCt                                                                                   >  2:4035097/1‑93 (MQ=255)
      ctgctgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCt                                                                                   <  2:270647/93‑1 (MQ=255)
      ctgctgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCt                                                                                   >  1:4920214/1‑93 (MQ=255)
       tgctgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTg                                                                                  <  2:751448/93‑1 (MQ=255)
        gctgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGa                                                                                 >  2:1817238/1‑93 (MQ=255)
          tgGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATg                                                                               <  1:2265595/93‑1 (MQ=255)
           ggACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGt                                                                              >  1:150493/1‑93 (MQ=255)
           ggACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGt                                                                              <  2:3046253/93‑1 (MQ=255)
            gACCTGGGGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGtt                                                                             <  1:1109233/93‑1 (MQ=255)
              ccTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGa                                                                           <  2:1923311/93‑1 (MQ=255)
               cTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGaa                                                                          <  2:6245344/93‑1 (MQ=255)
                tggtggTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAg                                                                         >  2:97024/1‑93 (MQ=255)
                 ggtggtCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGc                                                                        <  1:1608096/93‑1 (MQ=255)
                  gtggtCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCg                                                                       >  2:5127526/1‑93 (MQ=255)
                    ggtCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGtc                                                                     <  2:3600804/93‑1 (MQ=255)
                    ggtCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGtc                                                                     <  2:5414733/93‑1 (MQ=255)
                       cTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTctct                                                                  <  1:2211313/93‑1 (MQ=255)
                       cTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTctct                                                                  <  2:142032/93‑1 (MQ=255)
                       cTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTctct                                                                  <  2:4305671/93‑1 (MQ=255)
                        tttGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTg                                                                 <  2:1390538/93‑1 (MQ=255)
                        tttGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTg                                                                 >  1:2599497/1‑93 (MQ=255)
                         ttGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTgg                                                                >  2:3297823/1‑93 (MQ=255)
                          tGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGa                                                               <  2:1611276/93‑1 (MQ=255)
                          tGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGa                                                               <  2:5048083/93‑1 (MQ=255)
                            gTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATc                                                             <  2:2669788/93‑1 (MQ=255)
                             tCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCg                                                            <  2:4444357/93‑1 (MQ=255)
                               gcgcgGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGcc                                                          <  2:2081550/93‑1 (MQ=255)
                               gcgcgGCAGGTCTGCATCTGAAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGcc                                                          <  2:4696572/93‑1 (MQ=255)
                                cgcgGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCt                                                         <  1:6475512/93‑1 (MQ=255)
                                 gcgGCAGGTCTGCATCTGCAAGAGTCTATCGTCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTg                                                        <  1:5559120/93‑1 (MQ=255)
                                  cgGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGa                                                       <  1:4201559/93‑1 (MQ=255)
                                     cAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAAcc                                                    <  2:4326288/93‑1 (MQ=255)
                                     cAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAAcc                                                    >  1:823430/1‑93 (MQ=255)
                                       ggTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGc                                                  <  2:1164414/93‑1 (MQ=255)
                                       ggTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGc                                                  <  1:186549/93‑1 (MQ=255)
                                        gTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCt                                                 <  2:4491171/93‑1 (MQ=255)
                                        gTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCt                                                 <  1:6355134/93‑1 (MQ=255)
                                         gctgcatctgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTg                                                <  2:5914899/92‑1 (MQ=255)
                                          ctgcatctgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTgg                                               <  1:2994412/93‑1 (MQ=255)
                                           tgcatctgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGa                                              >  1:2344774/1‑93 (MQ=255)
                                            gcatctgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGaa                                             >  1:3538939/1‑93 (MQ=255)
                                             catctgcaAGAGTCTATCGACGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAAc                                            <  2:1145501/93‑1 (MQ=255)
                                              atctgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACa                                           >  1:1359348/1‑93 (MQ=255)
                                                 tgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACaata                                        >  1:1222953/1‑93 (MQ=255)
                                                 tgcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACaata                                        >  2:1323444/1‑93 (MQ=255)
                                                  gcaAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACaataa                                       >  1:4274364/1‑93 (MQ=255)
                                                   caAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACaataat                                      <  2:2267065/93‑1 (MQ=255)
                                                    aaGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATc                                     <  1:2465521/93‑1 (MQ=255)
                                                    aaGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATc                                     >  1:3832436/1‑93 (MQ=255)
                                                    aaGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATc                                     <  2:3153704/93‑1 (MQ=255)
                                                     agagTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCg                                    >  1:3452049/1‑93 (MQ=255)
                                                      gagTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGt                                   <  1:5785097/93‑1 (MQ=255)
                                                         tCTATCGCCTAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAAc                                <  2:5346114/93‑1 (MQ=255)
                                                         tCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAAc                                <  1:2201613/93‑1 (MQ=255)
                                                           tATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACgg                              <  1:1025290/93‑1 (MQ=255)
                                                               gCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGaa                          <  1:317172/93‑1 (MQ=255)
                                                               gCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGaa                          <  2:5600770/93‑1 (MQ=255)
                                                               gCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGaa                          >  1:4797305/1‑93 (MQ=255)
                                                                ccGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGAGAAg                         >  1:6025003/1‑93 (MQ=255)
                                                                  gAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAt                       >  1:3250679/1‑93 (MQ=255)
                                                                  gAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAt                       <  2:5802734/93‑1 (MQ=255)
                                                                  gAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAt                       >  2:4775712/1‑93 (MQ=255)
                                                                  gAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAt                       <  1:2374438/93‑1 (MQ=255)
                                                                   aGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATc                      >  2:3074737/1‑93 (MQ=255)
                                                                   aGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATc                      <  1:5952834/93‑1 (MQ=255)
                                                                    gCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATcc                     >  2:3315443/1‑93 (MQ=255)
                                                                    gCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATcc                     >  2:3858422/1‑93 (MQ=255)
                                                                     cAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCg                    <  1:4233527/93‑1 (MQ=255)
                                                                     cAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCg                    <  2:391834/93‑1 (MQ=255)
                                                                      aGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCgg                   <  2:4941117/93‑1 (MQ=255)
                                                                      aGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCgg                   <  2:5729411/93‑1 (MQ=255)
                                                                       gggCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGt                  <  2:2364790/93‑1 (MQ=255)
                                                                        ggCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTg                 <  1:4590769/93‑1 (MQ=255)
                                                                        ggCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTg                 <  2:855206/93‑1 (MQ=255)
                                                                        ggCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTg                 <  1:1993161/93‑1 (MQ=255)
                                                                         gcgcACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTgg                <  1:5046233/93‑1 (MQ=255)
                                                                         gcgcACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTgg                <  1:2885054/93‑1 (MQ=255)
                                                                            cACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGgaga             >  1:6197216/1‑93 (MQ=255)
                                                                             aCTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGAt            <  1:5495298/93‑1 (MQ=255)
                                                                             aCTGCGCGAGGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGAt            <  1:1263189/93‑1 (MQ=255)
                                                                               tGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATcc          >  2:532284/1‑93 (MQ=255)
                                                                               tGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATcc          <  2:3426882/93‑1 (MQ=255)
                                                                                gcgcGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCg         <  2:6020347/93‑1 (MQ=255)
                                                                                 cgcgATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGt        <  1:4943805/93‑1 (MQ=255)
                                                                                    gATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTaaa     <  2:5549398/93‑1 (MQ=255)
                                                                                     aTGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAg    <  2:3817853/93‑1 (MQ=255)
                                                                                     aTGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAg    >  2:2506281/1‑93 (MQ=255)
                                                                                     aTGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAg    >  1:5232757/1‑93 (MQ=255)
                                                                                      tGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAgc   <  2:5219856/93‑1 (MQ=255)
                                                                                      tGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAgc   <  2:4638751/93‑1 (MQ=255)
                                                                                       gCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAgcg  >  2:685403/1‑93 (MQ=255)
                                                                                          |                                                                                         
AACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCAGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCG  >  NC_000913/756336‑756515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCAGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCGCTG  >  NC_000913/756333‑756518
                                                                                             |                                                                                            
GGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCG                                                                                              <  SRR4302534.5816335/94‑1 (MQ=60)
  CAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGC                                                                                            >  SRR4302534.4047236/1‑94 (MQ=60)
   AACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCG                                                                                           >  SRR4302534.2238426/1‑94 (MQ=60)
   AACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCG                                                                                           >  SRR4302534.5557532/1‑94 (MQ=60)
     CTCGCTGCTGGCCCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAG                                                                                         <  SRR4302534.2269741/94‑1 (MQ=60)
     CTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAG                                                                                         <  SRR4302534.5141732/94‑1 (MQ=60)
     CTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAG                                                                                         <  SRR4302534.3291238/94‑1 (MQ=60)
     CTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGCGCGCACTGCGCGATGCCGGCGAG                                                                                         >  SRR4302534.6163653/1‑94 (MQ=60)
      TCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGT                                                                                        <  SRR4302534.177851/94‑1 (MQ=60)
       CGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTC                                                                                       >  SRR4302534.2716090/1‑94 (MQ=60)
       CGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTC                                                                                       >  SRR4302534.5947777/1‑94 (MQ=60)
       CGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTC                                                                                       <  SRR4302534.150019/94‑1 (MQ=60)
        GCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCT                                                                                      >  SRR4302534.5053567/1‑94 (MQ=60)
        GCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCT                                                                                      <  SRR4302534.3800203/94‑1 (MQ=60)
        GCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCT                                                                                      >  SRR4302534.1638146/1‑94 (MQ=60)
         CTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTG                                                                                     <  SRR4302534.180168/94‑1 (MQ=60)
          TGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGT                                                                                    >  SRR4302534.1661536/1‑94 (MQ=60)
            CTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATG                                                                                  <  SRR4302534.2247003/94‑1 (MQ=60)
             TGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGT                                                                                 >  SRR4302534.154417/1‑94 (MQ=60)
             TGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGT                                                                                 <  SRR4302534.625231/94‑1 (MQ=60)
             TGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGT                                                                                 <  SRR4302534.2325680/94‑1 (MQ=60)
              GGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTT                                                                                <  SRR4302534.5688504/94‑1 (MQ=60)
               GACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTG                                                                               >  SRR4302534.344656/1‑94 (MQ=60)
               GACCTGGGGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTG                                                                               <  SRR4302534.1138160/94‑1 (MQ=60)
                ACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGGCTGATGTTGA                                                                              >  SRR4302534.4675607/1‑94 (MQ=60)
                  CTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAG                                                                            <  SRR4302534.3861396/94‑1 (MQ=60)
                   TGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGC                                                                           >  SRR4302534.4976306/1‑94 (MQ=60)
                    GGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCG                                                                          <  SRR4302534.1650087/94‑1 (MQ=60)
                     GTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGT                                                                         <  SRR4302534.787357/94‑1 (MQ=60)
                     GTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCAAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGT                                                                         <  SRR4302534.4893747/94‑1 (MQ=60)
                      TGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTC                                                                        >  SRR4302534.2671682/1‑94 (MQ=60)
                       GGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCT                                                                       <  SRR4302534.3095399/94‑1 (MQ=60)
                        GTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGACCAGGGCGCACTGCGCGATGCCGGCGAGCCTGATGTTGAAGCGTCTT                                                                      >  SRR4302534.4558599/1‑94 (MQ=60)
                         TCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCT                                                                     <  SRR4302534.4315997/94‑1 (MQ=60)
                         TCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCT                                                                     <  SRR4302534.2576235/94‑1 (MQ=60)
                         TCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCT                                                                     <  SRR4302534.693779/94‑1 (MQ=60)
                         TCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCT                                                                     <  SRR4302534.4140171/94‑1 (MQ=60)
                          CTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTG                                                                    >  SRR4302534.2668285/1‑94 (MQ=60)
                          CTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTG                                                                    <  SRR4302534.4325683/94‑1 (MQ=60)
                          CTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTG                                                                    <  SRR4302534.916145/94‑1 (MQ=60)
                          CTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTG                                                                    <  SRR4302534.2269876/94‑1 (MQ=60)
                           TTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGG                                                                   <  SRR4302534.5361561/94‑1 (MQ=60)
                            TTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGA                                                                  <  SRR4302534.3484765/94‑1 (MQ=60)
                             TGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGAT                                                                 >  SRR4302534.1444455/1‑94 (MQ=60)
                             TGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGAT                                                                 >  SRR4302534.1887597/1‑94 (MQ=60)
                              GGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATC                                                                <  SRR4302534.1361159/94‑1 (MQ=60)
                                  GCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCT                                                            >  SRR4302534.2992772/1‑94 (MQ=60)
                                  GCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCT                                                            >  SRR4302534.1586176/1‑94 (MQ=60)
                                  GCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCT                                                            <  SRR4302534.5613107/94‑1 (MQ=60)
                                   CGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTG                                                           <  SRR4302534.6649972/94‑1 (MQ=60)
                                    GCGGCAGGTCTGCATCTGCAAGAGTCTATCGTCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGA                                                          <  SRR4302534.5709206/94‑1 (MQ=60)
                                    GCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGA                                                          >  SRR4302534.1264132/1‑94 (MQ=60)
                                    GCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGA                                                          <  SRR4302534.5064285/94‑1 (MQ=60)
                                     CGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAA                                                         <  SRR4302534.4315011/94‑1 (MQ=60)
                                       GCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGGCTGACCC                                                       >  SRR4302534.4747718/1‑94 (MQ=60)
                                       GCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACC                                                       >  SRR4302534.844145/1‑94 (MQ=60)
                                         AGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGC                                                     >  SRR4302534.2987021/1‑94 (MQ=60)
                                         AGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGC                                                     >  SRR4302534.2290922/1‑94 (MQ=60)
                                         AGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGC                                                     >  SRR4302534.506182/1‑94 (MQ=60)
                                          GGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGGCTGAACCGCT                                                    >  SRR4302534.1093078/1‑94 (MQ=60)
                                          GGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCT                                                    <  SRR4302534.191448/94‑1 (MQ=60)
                                           GTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTG                                                   <  SRR4302534.6526761/94‑1 (MQ=60)
                                             CTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGA                                                 >  SRR4302534.2406998/1‑94 (MQ=60)
                                             CTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGA                                                 <  SRR4302534.3072658/94‑1 (MQ=60)
                                             CTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGA                                                 >  SRR4302534.3996046/1‑94 (MQ=60)
                                              TGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAA                                                >  SRR4302534.3634141/1‑94 (MQ=60)
                                              TGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGACTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAA                                                >  SRR4302534.4166150/1‑94 (MQ=60)
                                                CATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACA                                              <  SRR4302534.5754906/94‑1 (MQ=60)
                                                CATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACA                                              >  SRR4302534.1395164/1‑94 (MQ=60)
                                                CATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACA                                              >  SRR4302534.3802844/1‑94 (MQ=60)
                                                   CTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATA                                           >  SRR4302534.1255154/1‑94 (MQ=60)
                                                   CTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGCAACAATG                                           <  SRR4302534.5505833/94‑1 (MQ=60)
                                                    TGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAA                                          >  SRR4302534.4389966/1‑94 (MQ=60)
                                                     GCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAAT                                         <  SRR4302534.435498/94‑1 (MQ=60)
                                                      CAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATC                                        >  SRR4302534.3935358/1‑94 (MQ=60)
                                                       AAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCG                                       <  SRR4302534.6424210/94‑1 (MQ=60)
                                                       AAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCG                                       <  SRR4302534.2531028/94‑1 (MQ=60)
                                                       AAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCG                                       >  SRR4302534.3544850/1‑94 (MQ=60)
                                                        AGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGT                                      >  SRR4302534.2719103/1‑94 (MQ=60)
                                                         GAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTA                                     <  SRR4302534.5942016/94‑1 (MQ=60)
                                                           GTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATTGTAAC                                   >  SRR4302534.3583132/1‑94 (MQ=60)
                                                           GTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAAC                                   <  SRR4302534.2431274/94‑1 (MQ=60)
                                                            TCTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACG                                  <  SRR4302534.2259867/94‑1 (MQ=60)
                                                             CTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGG                                 <  SRR4302534.5861879/94‑1 (MQ=60)
                                                             CTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGG                                 >  SRR4302534.2475150/1‑94 (MQ=60)
                                                             CTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGG                                 >  SRR4302534.5407307/1‑94 (MQ=60)
                                                             CTATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGCTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGG                                 >  SRR4302534.6044697/1‑94 (MQ=60)
                                                              TATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGT                                <  SRR4302534.2295822/94‑1 (MQ=60)
                                                              TATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGT                                <  SRR4302534.1051698/94‑1 (MQ=60)
                                                              TATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGG                                >  SRR4302534.1144134/1‑94 (MQ=60)
                                                               ATCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTG                               >  SRR4302534.5602168/1‑94 (MQ=60)
                                                                TCGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGA                              >  SRR4302534.6607072/1‑94 (MQ=60)
                                                                 CGCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAA                             >  SRR4302534.4927567/1‑94 (MQ=60)
                                                                  GCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAG                            <  SRR4302534.2602414/94‑1 (MQ=60)
                                                                  GCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAG                            <  SRR4302534.325342/94‑1 (MQ=60)
                                                                  GCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAG                            <  SRR4302534.5160092/94‑1 (MQ=60)
                                                                  GCCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGAGAAG                            >  SRR4302534.6188740/1‑94 (MQ=60)
                                                                   CCGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGA                           >  SRR4302534.118936/1‑94 (MQ=60)
                                                                    CGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAT                          >  SRR4302534.3337246/1‑94 (MQ=60)
                                                                    CGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAT                          >  SRR4302534.3281946/1‑94 (MQ=60)
                                                                    CGAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGAT                          >  SRR4302534.1509112/1‑94 (MQ=60)
                                                                     GAGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATC                         <  SRR4302534.2437495/94‑1 (MQ=60)
                                                                      AGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCC                        >  SRR4302534.1938352/1‑94 (MQ=60)
                                                                      AGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCC                        <  SRR4302534.6114475/94‑1 (MQ=60)
                                                                      AGCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCC                        <  SRR4302534.1481302/94‑1 (MQ=60)
                                                                       GCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCG                       <  SRR4302534.1982391/94‑1 (MQ=60)
                                                                       GCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCG                       <  SRR4302534.2375343/94‑1 (MQ=60)
                                                                       GCAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCG                       <  SRR4302534.291200/94‑1 (MQ=60)
                                                                        CAGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGG                      <  SRR4302534.4347629/94‑1 (MQ=60)
                                                                         AGGGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGT                     <  SRR4302534.1329880/94‑1 (MQ=60)
                                                                           GGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGG                   <  SRR4302534.2045367/94‑1 (MQ=60)
                                                                           GGCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGG                   <  SRR4302534.4715357/94‑1 (MQ=60)
                                                                            GCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGC                  <  SRR4302534.5182492/94‑1 (MQ=60)
                                                                            GCGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGC                  <  SRR4302534.2960776/94‑1 (MQ=60)
                                                                             CGCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCG                 <  SRR4302534.6245304/94‑1 (MQ=60)
                                                                              GCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGA                <  SRR4302534.2528273/94‑1 (MQ=60)
                                                                              GCACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGAGA                >  SRR4302534.6365803/1‑94 (MQ=60)
                                                                               CACTGCGCGATGCCGGCGAGTCTGGTGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGAT               <  SRR4302534.6513810/94‑1 (MQ=60)
                                                                                ACTGCGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATC              <  SRR4302534.5643484/94‑1 (MQ=60)
                                                                                ACTGCGCGAGGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATC              <  SRR4302534.1296467/94‑1 (MQ=60)
                                                                                    CGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGGACAATCATCGTAACGGTGAAGATCCGGTGGCGACCCGTA          >  SRR4302534.2626979/1‑94 (MQ=60)
                                                                                    CGCGATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTA          <  SRR4302534.5077748/94‑1 (MQ=60)
                                                                                       GATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAG       >  SRR4302534.5374031/1‑94 (MQ=60)
                                                                                        ATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGC      >  SRR4302534.2381083/1‑94 (MQ=60)
                                                                                        ATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGC      <  SRR4302534.3685673/94‑1 (MQ=60)
                                                                                        ATGCCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGC      <  SRR4302534.3794665/94‑1 (MQ=60)
                                                                                           CCGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCGCT   <  SRR4302534.5858478/94‑1 (MQ=60)
                                                                                            CGGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCGCTG  >  SRR4302534.4997536/1‑94 (MQ=60)
                                                                                            CGGCGAGTCTGATGTGGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCGCTG  <  SRR4302534.1582378/94‑1 (MQ=60)
                                                                                             |                                                                                            
GGCAACTCGCTGCTGGACCTGGTGGTCTTTGGTCGCGCGGCAGGTCTGCATCTGCAAGAGTCTATCGCCGAGCAGGGCGCACTGCGCGATGCCAGCGAGTCTGATGTTGAAGCGTCTCTGGATCGCCTGAACCGCTGGAACAATAATCGTAACGGTGAAGATCCGGTGGCGATCCGTAAAGCGCTG  >  NC_000913/756333‑756518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑