Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
765,778 |
C→T |
A191V (GCC→GTC) |
hrsA → |
PTS system fructose specific IIABC component |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 765,778 | 0 | C | T | 100.0%
| 835.4
/ NA
| 216 | A191V (GCC→GTC) | hrsA | PTS system fructose specific IIABC component |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (94/122); total (94/122) |
Only 100 of 221 total aligned reads displayed.
CTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAA > NC_000913/765688‑765867
|
cTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCt > 1:541398/1‑93 (MQ=255)
tgatgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTg < 1:4477333/93‑1 (MQ=255)
tgatgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTg < 1:5328524/93‑1 (MQ=255)
tgatgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTg > 2:3751921/1‑93 (MQ=255)
tgatgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTg > 1:3002239/1‑93 (MQ=255)
gatgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGt > 2:5002555/1‑93 (MQ=255)
tgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTcc < 1:678146/93‑1 (MQ=255)
tgaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTcc < 1:3695076/93‑1 (MQ=255)
gaGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCcg > 2:666807/1‑93 (MQ=255)
aGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCcgg < 2:476550/93‑1 (MQ=255)
ttGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCcggcg < 1:3510535/93‑1 (MQ=255)
tGCTCTCGGCGCTGGATGACAAGGTAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCcggcgg < 1:752679/93‑1 (MQ=255)
tGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCcggcgg < 1:1818877/93‑1 (MQ=255)
tGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCcggcgg > 1:608068/1‑93 (MQ=255)
gCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCggg < 2:1422637/93‑1 (MQ=255)
gCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCggg < 2:4037964/93‑1 (MQ=255)
ctcGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCACCGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTAt < 2:3439855/93‑1 (MQ=255)
ctcGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTAt > 2:4017311/1‑93 (MQ=255)
tcGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTAtt > 2:126045/1‑93 (MQ=255)
ggCGCTGGATGACAAGGGAGGCACGCAGCCTTCTGCCTCTTTTCCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGc < 2:3677524/93‑1 (MQ=255)
ggCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGc < 1:4806092/93‑1 (MQ=255)
gcgcTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCt > 2:2907101/1‑93 (MQ=255)
gcTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTca > 1:1470055/1‑93 (MQ=255)
cTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTcac > 2:2289484/1‑93 (MQ=255)
cTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTcac < 2:4564368/93‑1 (MQ=255)
ggATGACAAGGGAGGCTCGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCacac > 1:4748264/1‑93 (MQ=255)
gATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACAcc > 2:2105686/1‑93 (MQ=255)
gATGACAAGGGAGGCACGCAACCGTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACAcc < 1:1896591/93‑1 (MQ=255)
aTGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCt < 1:4548183/93‑1 (MQ=255)
aTGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCt < 1:5029745/93‑1 (MQ=255)
tGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCta < 2:5717361/93‑1 (MQ=255)
gACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTGCAACGCGCCAACTTTCGTCTGCGTAACGGTCTGTCCGGAGGGTATTGCTAACACCtat > 1:3782052/1‑93 (MQ=255)
gACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCtat > 2:5530358/1‑93 (MQ=255)
cAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTatat < 1:5156533/93‑1 (MQ=255)
cAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTatat < 2:80584/93‑1 (MQ=255)
aaGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATg > 2:1328468/1‑93 (MQ=255)
aaGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATg < 1:2629305/93‑1 (MQ=255)
gggAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGc < 1:5550061/93‑1 (MQ=255)
ggAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCt > 1:3063736/1‑93 (MQ=255)
aGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGc > 2:6187421/1‑93 (MQ=255)
aGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGc < 2:1195658/93‑1 (MQ=255)
ggCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCg < 1:2385138/93‑1 (MQ=255)
ggCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCg < 1:2538257/93‑1 (MQ=255)
gCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCgg < 2:1560531/93‑1 (MQ=255)
aCGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGaa < 1:2310577/93‑1 (MQ=255)
gCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAata < 2:3076642/93‑1 (MQ=255)
ccAACCTTCTGCCTCTTGTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAata < 2:2350818/92‑1 (MQ=255)
cAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAatat > 2:4662155/1‑93 (MQ=255)
aaCCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATc > 1:1235692/1‑93 (MQ=255)
aCCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCt < 2:3374376/93‑1 (MQ=255)
aCCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCt < 2:2982221/93‑1 (MQ=255)
aCCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCt > 2:2762249/1‑93 (MQ=255)
aCCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCt > 2:216995/1‑93 (MQ=255)
ccTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTg < 2:3905368/93‑1 (MQ=255)
cTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTgg < 2:4976146/93‑1 (MQ=255)
ttCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGCATATCTGGa > 1:1588843/1‑93 (MQ=255)
ttCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGa < 1:1083333/93‑1 (MQ=255)
ttCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGa > 1:581742/1‑93 (MQ=255)
tCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGaa > 1:5954332/1‑93 (MQ=255)
gCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGaaaaa < 2:5826976/93‑1 (MQ=255)
gCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGaaaaa < 1:2820289/93‑1 (MQ=255)
ccTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAACAg > 1:4336740/1‑93 (MQ=255)
ccTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAg > 2:3954562/1‑93 (MQ=255)
ctctTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGc < 2:1639770/93‑1 (MQ=255)
tctTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGcc > 1:4994714/1‑93 (MQ=255)
ctTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCg < 2:3622957/93‑1 (MQ=255)
ttttCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGa < 1:2075322/93‑1 (MQ=255)
ttttCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGa < 1:2471452/93‑1 (MQ=255)
ttttCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGa < 2:3563082/93‑1 (MQ=255)
ttttCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGa < 1:3114451/93‑1 (MQ=255)
tCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGc < 1:5712780/93‑1 (MQ=255)
tCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGc < 1:6283379/93‑1 (MQ=255)
ccAACGCGCCAACTATCGTCTGCGTAACGCTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCa > 1:1390608/1‑93 (MQ=255)
cAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaa > 2:286617/1‑93 (MQ=255)
cAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaa > 2:1826997/1‑93 (MQ=255)
aaCGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaac > 2:5224426/1‑92 (MQ=255)
aaCGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaaa < 2:3525683/93‑1 (MQ=255)
aaCGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaaa < 2:2563720/93‑1 (MQ=255)
aaCGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaaa < 2:2492643/93‑1 (MQ=255)
aaCGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCaaa < 1:818576/93‑1 (MQ=255)
cgcgCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACt < 1:4394006/93‑1 (MQ=255)
cgcgCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACt < 1:900890/93‑1 (MQ=255)
cgcgCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACt < 2:3140633/93‑1 (MQ=255)
ccAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGc > 2:233256/1‑93 (MQ=255)
ccAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGc < 1:2746162/93‑1 (MQ=255)
cAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCg > 1:5350434/1‑93 (MQ=255)
aaCTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGt < 2:354968/93‑1 (MQ=255)
tATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTaaa < 1:4001252/93‑1 (MQ=255)
tATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTaaa < 1:4934636/93‑1 (MQ=255)
aTCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCGATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAAt > 2:4532332/1‑93 (MQ=255)
gTCTGCGTACCGGTCTGTCCGGCGGGTATTGCTCGCCCCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGtt < 1:937620/93‑1 (MQ=255)
gTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGCAAAAAGCCGGACGCAAACCCGGCGTAAATGtt > 2:561055/1‑93 (MQ=255)
tCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGttt < 2:5443980/93‑1 (MQ=255)
cTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTa < 2:4655282/93‑1 (MQ=255)
gTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGtt < 2:1446689/93‑1 (MQ=255)
tAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTg > 2:4369106/1‑93 (MQ=255)
aaCGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGa < 2:3812528/93‑1 (MQ=255)
aaCGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGa < 1:3167853/93‑1 (MQ=255)
aCGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGaa > 1:5124736/1‑93 (MQ=255)
cGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGaaa > 2:2229885/1‑93 (MQ=255)
|
CTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAA > NC_000913/765688‑765867
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAA > NC_000913/765687‑765869
|
CCTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCT > SRR4302534.554796/1‑94 (MQ=60)
CTGATGAGTTGCTCTTGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTG < SRR4302534.29584/94‑1 (MQ=60)
CTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTG > SRR4302534.3860044/1‑94 (MQ=60)
CTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTG > SRR4302534.3080768/1‑94 (MQ=60)
TGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGT < SRR4302534.4598463/94‑1 (MQ=60)
TGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGT < SRR4302534.5472238/94‑1 (MQ=60)
ATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCC > SRR4302534.2333696/1‑94 (MQ=60)
TGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCG < SRR4302534.694694/94‑1 (MQ=60)
TGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCG < SRR4302534.3794422/94‑1 (MQ=60)
GTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCG < SRR4302534.3147127/94‑1 (MQ=60)
TTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGG < SRR4302534.3604973/94‑1 (MQ=60)
TTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGG > SRR4302534.622863/1‑94 (MQ=60)
TGCTCTCGGCGCTGGATGACAAGGTAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGG < SRR4302534.771333/94‑1 (MQ=60)
TGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGG < SRR4302534.1866146/94‑1 (MQ=60)
CTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTA < SRR4302534.1554748/94‑1 (MQ=60)
CTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTA < SRR4302534.3550675/94‑1 (MQ=60)
CTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTA > SRR4302534.49953/1‑94 (MQ=60)
CTCGGCGCTGGATGACAAGGGAGGGACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGGGGGCATT > SRR4302534.2971703/1‑94 (MQ=60)
CTCGGCGCGGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATT < SRR4302534.1014495/94‑1 (MQ=60)
CGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGC < SRR4302534.2518627/94‑1 (MQ=60)
CGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGC < SRR4302534.5476185/94‑1 (MQ=60)
CGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCAAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGGATTGC > SRR4302534.5448201/1‑94 (MQ=60)
GGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCT < SRR4302534.4936575/94‑1 (MQ=60)
CGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCA > SRR4302534.1508728/1‑94 (MQ=60)
CGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCA < SRR4302534.5277747/94‑1 (MQ=60)
TCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCAC < SRR4302534.3244511/94‑1 (MQ=60)
CTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACA > SRR4302534.5138079/1‑94 (MQ=60)
TGGATGACAAGGGAGGCTCGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACAC > SRR4302534.4877157/1‑94 (MQ=60)
GATGACAAGGGAGGCACGCAACCGTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCT < SRR4302534.1946052/94‑1 (MQ=60)
GTGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTA > SRR4302534.924946/1‑94 (MQ=60)
ATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTA < SRR4302534.6196816/94‑1 (MQ=60)
ATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTA < SRR4302534.4671485/94‑1 (MQ=60)
ATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTA < SRR4302534.5165600/94‑1 (MQ=60)
TGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTGCAACGCGCCAACTTTCGTCTGCGTAACGGTCTGTCCGGAGGGTATTGCTAACACCTAT > SRR4302534.3883592/1‑94 (MQ=60)
TGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTAT > SRR4302534.3757531/1‑94 (MQ=60)
TGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTAT < SRR4302534.5171209/94‑1 (MQ=60)
GACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATA < SRR4302534.172172/94‑1 (MQ=60)
ACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATAT < SRR4302534.5773636/94‑1 (MQ=60)
CAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATG < SRR4302534.5295583/94‑1 (MQ=60)
AAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGG < SRR4302534.5459553/94‑1 (MQ=60)
AAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGG > SRR4302534.5670113/1‑94 (MQ=60)
AAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGG < SRR4302534.2698851/94‑1 (MQ=60)
GGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCT < SRR4302534.5699867/94‑1 (MQ=60)
GGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCT > SRR4302534.3144149/1‑94 (MQ=60)
GGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTG > SRR4302534.3895614/1‑94 (MQ=60)
gagagccgcacccgTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCAGGCGGGTATTGCTCACCCCTATATGGCTGC < SRR4302534.1671502/80‑1 (MQ=60)
AGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCG < SRR4302534.292341/94‑1 (MQ=60)
GGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGG < SRR4302534.2448510/94‑1 (MQ=60)
GGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGG < SRR4302534.2605602/94‑1 (MQ=60)
ACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAAT < SRR4302534.2371903/94‑1 (MQ=60)
ACGCAACCTACTGCCTCTTTTGCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAAT > SRR4302534.6495856/1‑94 (MQ=60)
CGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATA > SRR4302534.2560796/1‑94 (MQ=60)
CAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATC > SRR4302534.1268258/1‑94 (MQ=60)
CCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGG < SRR4302534.445535/94‑1 (MQ=60)
CCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAACATCTGG > SRR4302534.3776932/1‑94 (MQ=60)
CTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGCATATCTGGA > SRR4302534.1630401/1‑94 (MQ=60)
CTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGA > SRR4302534.595983/1‑94 (MQ=60)
CTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGA > SRR4302534.4878741/1‑94 (MQ=60)
TTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAA < SRR4302534.1111507/94‑1 (MQ=60)
TTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAA > SRR4302534.6116016/1‑94 (MQ=60)
TCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAA < SRR4302534.829877/94‑1 (MQ=60)
CTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAA > SRR4302534.2647069/1‑94 (MQ=60)
TGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAA > SRR4302534.4963574/1‑94 (MQ=60)
GCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAACAG > SRR4302534.4453962/1‑94 (MQ=60)
GCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAG < SRR4302534.2415790/94‑1 (MQ=60)
GCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAG < SRR4302534.4539503/94‑1 (MQ=60)
GCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAG < SRR4302534.2894448/94‑1 (MQ=60)
GCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAG > SRR4302534.4453963/1‑94 (MQ=60)
CTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCC > SRR4302534.5539953/1‑94 (MQ=60)
CTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCC > SRR4302534.5129805/1‑94 (MQ=60)
TCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCG < SRR4302534.1959091/94‑1 (MQ=60)
CTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGG > SRR4302534.906777/1‑94 (MQ=60)
TTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGAC < SRR4302534.2129650/94‑1 (MQ=60)
TTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGAC < SRR4302534.3196360/94‑1 (MQ=60)
TTTTCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGAC < SRR4302534.2537138/94‑1 (MQ=60)
TCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCA < SRR4302534.5867550/94‑1 (MQ=60)
TCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCA < SRR4302534.1226600/94‑1 (MQ=60)
TCCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCA < SRR4302534.6453399/94‑1 (MQ=60)
TCCAACGCGCCAACTATCGTCTGCGTAACGCTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCA > SRR4302534.1427213/1‑94 (MQ=60)
CCAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAA > SRR4302534.6628005/1‑94 (MQ=60)
CAACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAA > SRR4302534.5895175/1‑94 (MQ=60)
AACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAAC < SRR4302534.839156/94‑1 (MQ=60)
AACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAAC > SRR4302534.286150/1‑94 (MQ=60)
AACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAAC < SRR4302534.1880343/94‑1 (MQ=60)
ACGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACT < SRR4302534.1442294/94‑1 (MQ=60)
CGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTC < SRR4302534.923734/94‑1 (MQ=60)
CGCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTC < SRR4302534.4512510/94‑1 (MQ=60)
GCGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCG > SRR4302534.2498675/1‑94 (MQ=60)
CGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGGATATCTGGAAAAAGCCGGACGCAAACTCGG > SRR4302534.69900/1‑94 (MQ=60)
CGCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGG > SRR4302534.5908853/1‑94 (MQ=60)
GCCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGC > SRR4302534.507952/1‑94 (MQ=60)
CCCAACTCTCGACTGCGTAACGGTCTGTCCGGCGGGTATTGCGCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGC < SRR4302534.4375031/94‑1 (MQ=60)
CCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCG > SRR4302534.5494686/1‑94 (MQ=60)
CCAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCG < SRR4302534.2818493/94‑1 (MQ=60)
CAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGT > SRR4302534.2757380/1‑94 (MQ=60)
CAACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACCCGGCGT > SRR4302534.1270549/1‑94 (MQ=60)
ACTATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAA < SRR4302534.6073062/94‑1 (MQ=60)
TATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAAT < SRR4302534.5068364/94‑1 (MQ=60)
TATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAAT < SRR4302534.4108367/94‑1 (MQ=60)
ATCGTCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATG < SRR4302534.2901383/94‑1 (MQ=60)
GTCTGCGTACCGGTCTGTCCGGCGGGTATTGCTCGCCCCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTT < SRR4302534.961465/94‑1 (MQ=60)
TCTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTA > SRR4302534.4863640/1‑94 (MQ=60)
CTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACTCCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTAC < SRR4302534.4196005/94‑1 (MQ=60)
CTGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTAC < SRR4302534.634913/94‑1 (MQ=60)
TGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACG < SRR4302534.4653181/94‑1 (MQ=60)
TGCGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACG < SRR4302534.1808802/94‑1 (MQ=60)
CGTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTT > SRR4302534.3100442/1‑94 (MQ=60)
GTAACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTG < SRR4302534.1005310/94‑1 (MQ=60)
AACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAA < SRR4302534.3251405/94‑1 (MQ=60)
AACGGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAA > SRR4302534.5263112/1‑94 (MQ=60)
GGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAA > SRR4302534.2995523/1‑94 (MQ=60)
GGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAA > SRR4302534.2270033/1‑94 (MQ=60)
GGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAA < SRR4302534.5605968/94‑1 (MQ=60)
GGTCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGAGTAAATGTTTACGTTGAAAAA > SRR4302534.6610962/1‑94 (MQ=60)
|
CCTGATGAGTTGCTCTCGGCGCTGGATGACAAGGGAGGCACGCAACCTTCTGCCTCTTTTTCCAACGCGCCAACTATCGTCTGCGTAACGGCCTGTCCGGCGGGTATTGCTCACACCTATATGGCTGCGGAATATCTGGAAAAAGCCGGACGCAAACTCGGCGTAAATGTTTACGTTGAAAAA > NC_000913/765687‑765869
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
