Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
844,809 |
A→G |
intergenic (‑106/+155) |
ybiO ← / ← glnQ |
putative transport protein/ATP‑binding component of glutamine high‑affinity transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 844,809 | 0 | A | G | 99.5%
| 707.4
/ ‑4.5
| 204 | intergenic (‑106/+155) | ybiO/glnQ | putative transport protein/ATP‑binding component of glutamine high‑affinity transport system |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (110/93); total (110/94) |
| Fisher's exact test for biased strand distribution p-value = 4.61e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01 |
Only 100 of 213 total aligned reads displayed.
AAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGAGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCA > NC_000913/844719‑844898
|
aaaTAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGggggga < 2:2643144/93‑1 (MQ=255)
aaTAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGaa > 2:3089549/1‑93 (MQ=255)
aaTAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGaa > 2:474135/1‑93 (MQ=255)
aTAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAg > 1:3266715/1‑93 (MQ=255)
tAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAgg < 2:1071698/93‑1 (MQ=255)
agagCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAggg > 2:132819/1‑93 (MQ=255)
gagCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGa > 2:1046430/1‑93 (MQ=255)
gagCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGa > 2:5567300/1‑93 (MQ=255)
agCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGat > 1:4299975/1‑93 (MQ=255)
agCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGat < 2:5503926/93‑1 (MQ=255)
gCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGata > 2:5260143/1‑93 (MQ=255)
gCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGata < 1:2156457/93‑1 (MQ=255)
cAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAGGGGGGGAAGGGatat < 2:5492210/93‑1 (MQ=255)
aaaaaGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATAtt > 1:6142436/1‑93 (MQ=255)
aaaaGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTa < 1:2286924/93‑1 (MQ=255)
aaaGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTaa > 1:4957497/1‑93 (MQ=255)
aaGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAg < 2:4343495/93‑1 (MQ=255)
aGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGc > 1:5888395/1‑93 (MQ=255)
gATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAGAGGGGGGGAGGGATATTAAGCa > 2:631096/1‑93 (MQ=255)
gATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCa < 1:5348335/93‑1 (MQ=255)
aTAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAg < 2:4001288/93‑1 (MQ=255)
tAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAgg < 2:477648/93‑1 (MQ=255)
tAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAgg < 1:3344716/93‑1 (MQ=255)
aGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGtt > 2:3563207/1‑93 (MQ=255)
aGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGtt < 1:1001056/93‑1 (MQ=255)
aGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGtt < 1:1616459/93‑1 (MQ=255)
tataGATGGTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGc < 1:3546601/93‑1 (MQ=255)
tataGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGc < 1:3476361/93‑1 (MQ=255)
taGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTg < 2:6418153/93‑1 (MQ=255)
gATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGAc < 1:2128871/93‑1 (MQ=255)
gATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGAc > 2:6165936/1‑93 (MQ=255)
tGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACaa < 2:5363363/93‑1 (MQ=255)
gCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAAc > 2:4983136/1‑93 (MQ=255)
gCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAAc < 2:2756867/93‑1 (MQ=255)
gCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAAc > 1:68471/1‑93 (MQ=255)
ggaggaGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTg > 1:5633655/1‑93 (MQ=255)
ggaggaGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTg > 2:1210142/1‑93 (MQ=255)
gaggagGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGc < 2:3275260/93‑1 (MQ=255)
ggaggGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCgg > 2:6284297/1‑93 (MQ=255)
gaggGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCggg > 1:5224814/1‑93 (MQ=255)
aggGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGc > 1:1431525/1‑93 (MQ=255)
ggggCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCt < 1:5133377/93‑1 (MQ=255)
ggggCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCt < 1:4023324/93‑1 (MQ=255)
ggggCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCt < 1:4865272/93‑1 (MQ=255)
gggCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCtt > 2:1618580/1‑93 (MQ=255)
gggCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCtt > 2:4050544/1‑93 (MQ=255)
ggCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCttt < 2:5754058/93‑1 (MQ=255)
cGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCttttt < 1:1489021/93‑1 (MQ=255)
gATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCtttttt > 1:1272577/1‑93 (MQ=255)
ttttAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGc > 1:2507846/1‑93 (MQ=255)
ttAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCg < 1:2899162/93‑1 (MQ=255)
aaTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGAt > 1:2057717/1‑93 (MQ=255)
aaTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGAt > 1:454092/1‑93 (MQ=255)
aaTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGAt > 2:2299704/1‑93 (MQ=255)
aTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATg > 2:4806287/1‑93 (MQ=255)
aTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATg < 1:4456469/93‑1 (MQ=255)
aTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATg < 1:6101230/93‑1 (MQ=255)
aTGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATg < 2:4962089/93‑1 (MQ=255)
tGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATgc < 1:5453372/93‑1 (MQ=255)
agagGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATgcgg < 2:895005/93‑1 (MQ=255)
agagGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATgcgg < 2:2593740/93‑1 (MQ=255)
agGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATgcggcg > 2:545171/1‑93 (MQ=255)
agGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATgcggcg > 1:2606777/1‑93 (MQ=255)
ggAGTCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGt < 2:362682/93‑1 (MQ=255)
ggAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGt > 1:1234320/1‑93 (MQ=255)
gAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTg < 2:1928602/93‑1 (MQ=255)
aTCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGaa > 1:31796/1‑93 (MQ=255)
tCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAAc > 2:1980909/1‑93 (MQ=255)
ggTGTGCCCCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGcc > 2:1588591/1‑93 (MQ=255)
gtgtGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCt < 1:3016694/93‑1 (MQ=255)
gtgtGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCt < 1:6024983/93‑1 (MQ=255)
tgtgCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCtt < 2:2600233/93‑1 (MQ=255)
tgtgCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCtt > 2:4183453/1‑93 (MQ=255)
tgtgCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCtt < 2:2164322/93‑1 (MQ=255)
tgCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTAt > 2:3469795/1‑93 (MQ=255)
gCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATc < 1:961901/93‑1 (MQ=255)
gCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATc < 2:2951713/93‑1 (MQ=255)
gCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATc > 1:3813912/1‑93 (MQ=255)
ccTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATcc < 2:2348077/93‑1 (MQ=255)
cTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCg < 2:3950597/93‑1 (MQ=255)
cTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCg > 1:4364971/1‑93 (MQ=255)
tCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGt > 2:1949892/1‑93 (MQ=255)
cccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTc > 2:4201373/1‑93 (MQ=255)
cccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTc < 2:4294056/93‑1 (MQ=255)
cccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTc > 1:516871/1‑93 (MQ=255)
cccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTc > 1:4149739/1‑93 (MQ=255)
cccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTc > 2:5877927/1‑93 (MQ=255)
cccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGCCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTc < 1:1319383/93‑1 (MQ=255)
ccTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTCTTTGCCGGATGCGGCGTGAACGCCTTATCCGTcc > 2:5989887/1‑93 (MQ=255)
cGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACaa < 2:566466/93‑1 (MQ=255)
ggTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGt < 1:2933442/93‑1 (MQ=255)
tGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTc < 1:574612/93‑1 (MQ=255)
aaaGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCAt > 2:3881002/1‑93 (MQ=255)
aaaGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCAt > 2:3814181/1‑93 (MQ=255)
aaaGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCCACAAGttgag > 1:3943276/1‑90 (MQ=255)
aaGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATg > 1:2405698/1‑93 (MQ=255)
aGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTTCTACAAGTTCATGc > 1:1130264/1‑93 (MQ=255)
aGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGc > 1:3903370/1‑93 (MQ=255)
aGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGc > 2:3745705/1‑93 (MQ=255)
aGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGc > 1:1048293/1‑93 (MQ=255)
|
AAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGAGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCA > NC_000913/844719‑844898
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GAGAAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGAGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTT > NC_000913/844716‑844902
|
GAGAAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGG > SRR4302534.1937317/1‑94 (MQ=60)
AGAAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGG > SRR4302534.5585550/1‑94 (MQ=60)
GAAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGG < SRR4302534.4001303/94‑1 (MQ=60)
AAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGA > SRR4302534.1346760/1‑94 (MQ=60)
AATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAG < SRR4302534.4027272/94‑1 (MQ=60)
AATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAG > SRR4302534.3353715/1‑94 (MQ=60)
AATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAG > SRR4302534.4325439/1‑94 (MQ=60)
AATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAG < SRR4302534.1285032/94‑1 (MQ=60)
AAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGG < SRR4302534.2189922/94‑1 (MQ=60)
AGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGA > SRR4302534.4451330/1‑94 (MQ=60)
AGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGA > SRR4302534.4708078/1‑94 (MQ=60)
GAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGAT > SRR4302534.4416510/1‑94 (MQ=60)
GCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATAT < SRR4302534.2938410/94‑1 (MQ=60)
GCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATAT < SRR4302534.2213386/94‑1 (MQ=60)
GAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATT < SRR4302534.5453320/94‑1 (MQ=60)
CAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATT > SRR4302534.1491505/1‑94 (MQ=60)
CAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATT > SRR4302534.6309497/1‑94 (MQ=60)
AAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAA < SRR4302534.2347615/94‑1 (MQ=60)
AAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAA > SRR4302534.5091750/1‑94 (MQ=60)
AAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGC > SRR4302534.6048274/1‑94 (MQ=60)
AAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGC > SRR4302534.3024529/1‑94 (MQ=60)
AGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCA > SRR4302534.5526311/1‑94 (MQ=60)
AGATAAGTATACATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCA < SRR4302534.6275189/94‑1 (MQ=60)
GATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAG < SRR4302534.5492542/94‑1 (MQ=60)
ATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGG > SRR4302534.4658808/1‑94 (MQ=60)
TAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGT < SRR4302534.3434243/94‑1 (MQ=60)
AGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTG < SRR4302534.1658632/94‑1 (MQ=60)
AGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTG < SRR4302534.1026715/94‑1 (MQ=60)
TATAGATGGTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCT < SRR4302534.3641990/94‑1 (MQ=60)
TATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCT < SRR4302534.3569804/94‑1 (MQ=60)
ATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGTAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTG < SRR4302534.2345226/94‑1 (MQ=60)
ATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTG < SRR4302534.2990177/94‑1 (MQ=60)
TAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGA > SRR4302534.4261493/1‑94 (MQ=60)
AGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGAC > SRR4302534.456261/1‑94 (MQ=60)
GATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACA < SRR4302534.2184949/94‑1 (MQ=60)
TGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAAC > SRR4302534.70339/1‑94 (MQ=60)
CTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGT < SRR4302534.2411840/94‑1 (MQ=60)
TGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTG > SRR4302534.5786132/1‑94 (MQ=60)
GGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGC < SRR4302534.1884655/94‑1 (MQ=60)
GGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGG > SRR4302534.5365844/1‑94 (MQ=60)
GAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGC > SRR4302534.1469206/1‑94 (MQ=60)
GAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGC < SRR4302534.3797303/94‑1 (MQ=60)
GGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTT < SRR4302534.5271957/94‑1 (MQ=60)
GGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTT < SRR4302534.4131199/94‑1 (MQ=60)
GGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTT < SRR4302534.4997247/94‑1 (MQ=60)
GGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTT > SRR4302534.348461/1‑94 (MQ=60)
GGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTT > SRR4302534.6261266/1‑94 (MQ=60)
CGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTT > SRR4302534.1306081/1‑94 (MQ=60)
CGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTT > SRR4302534.2626823/1‑94 (MQ=60)
CGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTT < SRR4302534.1528185/94‑1 (MQ=60)
ATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGC > SRR4302534.2574439/1‑94 (MQ=60)
TTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGG < SRR4302534.2975256/94‑1 (MQ=60)
AAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGAT > SRR4302534.2111464/1‑94 (MQ=60)
AAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGAT > SRR4302534.465588/1‑94 (MQ=60)
AATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATG > SRR4302534.3204462/1‑94 (MQ=60)
AATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATG > SRR4302534.2158659/1‑94 (MQ=60)
AATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATG > SRR4302534.562899/1‑94 (MQ=60)
AATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATG > SRR4302534.862716/1‑94 (MQ=60)
ATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGC < SRR4302534.6267133/94‑1 (MQ=60)
ATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGC < SRR4302534.4576934/94‑1 (MQ=60)
TGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCG < SRR4302534.5600320/94‑1 (MQ=60)
AGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGC > SRR4302534.5030965/1‑94 (MQ=60)
GAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCG > SRR4302534.2675750/1‑94 (MQ=60)
AGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGT > SRR4302534.1266847/1‑94 (MQ=60)
AGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGT > SRR4302534.831935/1‑94 (MQ=60)
AATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAA > SRR4302534.32633/1‑94 (MQ=60)
ATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAAC > SRR4302534.2534136/1‑94 (MQ=60)
ATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAAC < SRR4302534.1408664/94‑1 (MQ=60)
GGTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCT > SRR4302534.1052816/1‑94 (MQ=60)
GTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTT < SRR4302534.3095666/94‑1 (MQ=60)
GTGTGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTT < SRR4302534.6188720/94‑1 (MQ=60)
GTGCCTCCCGTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTAT < SRR4302534.280628/94‑1 (MQ=60)
TGCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATC > SRR4302534.3916351/1‑94 (MQ=60)
GCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAGCGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCC < SRR4302534.6383529/94‑1 (MQ=60)
GCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCC < SRR4302534.986404/94‑1 (MQ=60)
GCCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCC < SRR4302534.1187386/94‑1 (MQ=60)
CCTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCG > SRR4302534.4482659/1‑94 (MQ=60)
CTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGT < SRR4302534.1627049/94‑1 (MQ=60)
CTCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGT < SRR4302534.4488623/94‑1 (MQ=60)
TCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTC > SRR4302534.4261757/1‑94 (MQ=60)
TCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTC > SRR4302534.6023456/1‑94 (MQ=60)
TCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTC > SRR4302534.3395777/1‑94 (MQ=60)
TCCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTC > SRR4302534.529724/1‑94 (MQ=60)
TCCCTTCCGGCTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCCTC < SRR4302534.5576458/94‑1 (MQ=60)
CCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCC < SRR4302534.3622529/94‑1 (MQ=60)
CCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCC < SRR4302534.380780/94‑1 (MQ=60)
CCCTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGCCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCC < SRR4302534.1354173/94‑1 (MQ=60)
CTTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGGGGGCTTTTTTGCCGGATGCGGCGTGAACGACTTATCCGTGCTA > SRR4302534.3339684/1‑94 (MQ=60)
TTTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTAC > SRR4302534.6178913/1‑94 (MQ=60)
TTCGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACA > SRR4302534.996722/1‑94 (MQ=60)
CGGGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAG > SRR4302534.1584173/1‑94 (MQ=60)
GGTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTT < SRR4302534.3010444/94‑1 (MQ=60)
GTGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTC > SRR4302534.3996214/1‑94 (MQ=60)
TGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCA < SRR4302534.588714/94‑1 (MQ=60)
TGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCA > SRR4302534.1125991/1‑94 (MQ=60)
TGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCA > SRR4302534.4087249/1‑94 (MQ=60)
TGAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCA < SRR4302534.5835665/94‑1 (MQ=60)
GAAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCCACAAGTTgag > SRR4302534.4048875/1‑91 (MQ=60)
AAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATG < SRR4302534.5139532/94‑1 (MQ=60)
AAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATG > SRR4302534.5299885/1‑94 (MQ=60)
AAAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATG > SRR4302534.2469635/1‑94 (MQ=60)
AAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTTCTACAAGTTCATGC > SRR4302534.1159808/1‑94 (MQ=60)
AAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGC > SRR4302534.4008059/1‑94 (MQ=60)
AAGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGC > SRR4302534.1075414/1‑94 (MQ=60)
AGGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCA < SRR4302534.5334474/94‑1 (MQ=60)
GGGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAA > SRR4302534.4166619/1‑94 (MQ=60)
GGGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAAT > SRR4302534.2771115/1‑94 (MQ=60)
GGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATT > SRR4302534.1459320/1‑94 (MQ=60)
GGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATT < SRR4302534.4811522/94‑1 (MQ=60)
GGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATT > SRR4302534.339688/1‑94 (MQ=60)
GGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATT < SRR4302534.5507580/94‑1 (MQ=60)
GGGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATT > SRR4302534.4843617/1‑94 (MQ=60)
GGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTT < SRR4302534.1606864/94‑1 (MQ=60)
GGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTT > SRR4302534.2538031/1‑94 (MQ=60)
|
GAGAAAATAGAGCAAAAAGATAAGTATAGATGCTGGAGGAGGGGCGATTTTAAATGAGAGGAATCTGGTGTGCCTCCCTTTCGGGTGAAAGGGAGGAAGGGATATTAAGCAGGTTGCTGACAACGTGCGGGCTTTTTTGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAAGTTCATGCAATTT > NC_000913/844716‑844902
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
