Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	888,260	A→G	D261D (GAT→GAC)	b0847 ←	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	888,260	0	A	G	100.0%	779.0 / NA	222	D261D (GAT→GAC)	b0847	putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (115/107); total (115/107)

Only 100 of 229 total aligned reads displayed.

TTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATT  >  NC_000913/888170‑888349

ttcttTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTc                                                                                         <  1:6039646/93‑1 (MQ=255)

  cttTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCAc                                                                                       <  1:4295987/93‑1 (MQ=255)

  cttTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCAc                                                                                       <  2:161765/93‑1 (MQ=255)

  cttTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCAc                                                                                       <  2:6007152/93‑1 (MQ=255)

  cttTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCAc                                                                                       <  2:3163939/93‑1 (MQ=255)

  cttTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCAc                                                                                       <  1:2366724/93‑1 (MQ=255)

   tttACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCAcc                                                                                      >  2:3593024/1‑93 (MQ=255)

     tACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGt                                                                                    >  1:4013101/1‑93 (MQ=255)

     tACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGt                                                                                    <  2:2134014/93‑1 (MQ=255)

      aCCGTTACGGAAGCTGGGATCGAGTCGGGCCTGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCCCTTGTAGCACGGCGACACCGTc                                                                                   >  1:104266/1‑93 (MQ=255)

      aCCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTc                                                                                   >  2:648333/1‑93 (MQ=255)

        cGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTg                                                                                 >  1:6400003/1‑93 (MQ=255)

         gTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTgg                                                                                <  1:2082583/93‑1 (MQ=255)

         gTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTgg                                                                                <  1:3056848/93‑1 (MQ=255)

              ggAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTg                                                                           >  2:2395985/1‑93 (MQ=255)

                 aGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCa                                                                        >  1:1271216/1‑93 (MQ=255)

                  gCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAg                                                                       >  2:2839984/1‑93 (MQ=255)

                  gCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAg                                                                       <  1:1097144/93‑1 (MQ=255)

                  gCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAg                                                                       <  1:4193877/93‑1 (MQ=255)

                   cTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGa                                                                      <  1:5954063/93‑1 (MQ=255)

                    tGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGaa                                                                     >  2:3930165/1‑93 (MQ=255)

                     gggATCGAGTCGGGCATGGGCGTCGGGCTAGCCTACCCACGCTATTTCATCGCCCATTTGTAGCACGGAGTCACCGTCTGGATTTGTCAGAAt                                                                    >  1:824377/1‑93 (MQ=255)

                     gggATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAAt                                                                    >  2:5963389/1‑93 (MQ=255)

                       gATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATcc                                                                  >  1:2642507/1‑93 (MQ=255)

                       gATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATcc                                                                  >  2:5934357/1‑93 (MQ=255)

                       gATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATcc                                                                  <  2:5719016/93‑1 (MQ=255)

                        aTCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATccc                                                                 <  2:2748124/93‑1 (MQ=255)

                        aTCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATccc                                                                 >  2:5808787/1‑93 (MQ=255)

                         tCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCg                                                                <  1:5555778/93‑1 (MQ=255)

                         tCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCg                                                                >  2:5088864/1‑93 (MQ=255)

                          cGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGt                                                               <  1:1766219/93‑1 (MQ=255)

                          cGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGt                                                               <  1:922765/93‑1 (MQ=255)

                             gTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTAc                                                            >  1:2135916/1‑93 (MQ=255)

                              tCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACg                                                           <  2:2997358/93‑1 (MQ=255)

                              tCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACg                                                           <  2:71565/93‑1 (MQ=255)

                               cGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCATGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACgc                                                          >  2:1721497/1‑92 (MQ=255)

                                gggCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTc                                                         >  2:5953936/1‑93 (MQ=255)

                                gggCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTc                                                         >  1:3720346/1‑93 (MQ=255)

                                 ggCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCg                                                        >  1:5034018/1‑93 (MQ=255)

                                  gCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGa                                                       >  1:5293110/1‑93 (MQ=255)

                                   cATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGaa                                                      >  2:4556777/1‑93 (MQ=255)

                                   cATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGaa                                                      <  1:2110242/93‑1 (MQ=255)

                                    aTGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAAt                                                     >  2:15748/1‑93 (MQ=255)

                                     tGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATa                                                    >  2:920822/1‑93 (MQ=255)

                                     tGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATa                                                    >  2:2536219/1‑93 (MQ=255)

                                     tGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATa                                                    <  2:6223072/93‑1 (MQ=255)

                                     tGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATa                                                    >  1:5752326/1‑93 (MQ=255)

                                     tGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATa                                                    >  1:5710070/1‑93 (MQ=255)

                                      gggCGTCGGGATAGCCTACCAACGCTATTTCATCGGCCATTTGTAGCACGGCGTCACCGTCTGGAGTTGCCAGAATCCCGTTACGTCGAATag                                                   >  1:3823632/1‑92 (MQ=255)

                                        gCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGt                                                 >  2:810186/1‑93 (MQ=255)

                                        gCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGt                                                 <  1:4642899/93‑1 (MQ=255)

                                         cGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGtt                                                >  2:3699247/1‑93 (MQ=255)

                                         cGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGtt                                                <  1:5393429/93‑1 (MQ=255)

                                           tCGGTATAGCCTACCAACGCTATGTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCa                                              <  1:485957/93‑1 (MQ=255)

                                           tCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCa                                              >  2:3531936/1‑93 (MQ=255)

                                           tCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCa                                              >  2:1536493/1‑93 (MQ=255)

                                             gggATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAAt                                            <  1:5490391/93‑1 (MQ=255)

                                              ggATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATg                                           <  1:3374048/93‑1 (MQ=255)

                                              ggATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATg                                           >  1:2009356/1‑93 (MQ=255)

                                              ggATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATg                                           <  1:4485538/93‑1 (MQ=255)

                                              ggATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATg                                           <  2:4659609/93‑1 (MQ=255)

                                               gATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGt                                          <  1:377092/93‑1 (MQ=255)

                                               gATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGt                                          >  1:2738097/1‑93 (MQ=255)

                                               gATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGGTCAATga                                          >  2:4583085/1‑92 (MQ=255)

                                                aTAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTa                                         <  2:4027878/93‑1 (MQ=255)

                                                  aGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTagc                                       >  2:3237631/1‑93 (MQ=255)

                                                  aGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTagc                                       >  1:5796629/1‑93 (MQ=255)

                                                     cTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATTCGTTCAATGTagcagc                                    <  1:512111/93‑1 (MQ=255)

                                                     cTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTagcagc                                    >  1:354145/1‑93 (MQ=255)

                                                     cTACCAACGCTATTTCAACGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTagcagc                                    <  2:4496210/93‑1 (MQ=255)

                                                      tACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATTCGTTCAATGTAGCAGcc                                   <  2:5581875/93‑1 (MQ=255)

                                                      tACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGcc                                   <  2:482371/93‑1 (MQ=255)

                                                       aCCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCg                                  >  1:5049993/1‑93 (MQ=255)

                                                       aCCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCg                                  <  1:313735/93‑1 (MQ=255)

                                                        ccAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCgg                                 >  2:3119947/1‑93 (MQ=255)

                                                        ccAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCgg                                 <  2:3102080/93‑1 (MQ=255)

                                                         cAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCTTCTGGATTTGCCAGAATCTCGTTACGTCGAATACGTTCAATGTAGCAGCCGGt                                <  1:5919734/93‑1 (MQ=255)

                                                          aaCGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGtt                               >  2:5862830/1‑93 (MQ=255)

                                                          aaCGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGtt                               <  2:2364384/93‑1 (MQ=255)

                                                           aCGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCATTGTAGCAGCCGGttt                              >  2:3519347/1‑93 (MQ=255)

                                                             gCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGt                            <  1:5965150/93‑1 (MQ=255)

                                                             gCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGt                            >  1:4434895/1‑93 (MQ=255)

                                                             gCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGt                            <  1:5315641/93‑1 (MQ=255)

                                                               tATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCg                          >  1:2870304/1‑93 (MQ=255)

                                                                aTTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGa                         >  2:3780191/1‑93 (MQ=255)

                                                                aTTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGa                         <  2:4992123/93‑1 (MQ=255)

                                                                 tttCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGAt                        >  1:1330370/1‑93 (MQ=255)

                                                                    cATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATaaa                     <  1:4735233/93‑1 (MQ=255)

                                                                     aTCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAAt                    >  2:5273858/1‑93 (MQ=255)

                                                                     aTCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAAt                    >  2:4732502/1‑93 (MQ=255)

                                                                       cGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATAc                  <  2:4443312/93‑1 (MQ=255)

                                                                        gCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATAcc                 >  2:2563729/1‑93 (MQ=255)

                                                                        gCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATAcc                 >  1:4352330/1‑93 (MQ=255)

                                                                         cccATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATAccc                <  1:153225/93‑1 (MQ=255)

                                                                         cccATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATAccc                <  1:3180954/93‑1 (MQ=255)

                                                                          ccATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCa               <  2:4128793/93‑1 (MQ=255)

                                                                                  aGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTAGGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGc       <  1:3288702/93‑1 (MQ=255)

                                                                                  aGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGc       >  1:5464024/1‑93 (MQ=255)

                                                                                  aGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGc       >  2:6170992/1‑93 (MQ=255)

                                                                                      cGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGAt   <  1:198731/93‑1 (MQ=255)

TTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATT  >  NC_000913/888170‑888349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACTTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG  >  NC_000913/888167‑888353

AACTTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCG                                                                                               <  SRR4302534.1116611/94‑1 (MQ=60)

AACTTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCG                                                                                               >  SRR4302534.4018707/1‑94 (MQ=60)

AACTTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCG                                                                                               >  SRR4302534.5395135/1‑94 (MQ=60)

  CTTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTC                                                                                             <  SRR4302534.2263466/94‑1 (MQ=60)

   TTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCA                                                                                            >  SRR4302534.1545465/1‑94 (MQ=60)

   TTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCA                                                                                            <  SRR4302534.6203788/94‑1 (MQ=60)

    TCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGGATGGGCGTCGGGATAGCCTACCAACGCCATTTCATCGCCCATTTGTAGCACGGCGTCAC                                                                                           >  SRR4302534.4594422/1‑94 (MQ=60)

     CTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACC                                                                                          >  SRR4302534.2161554/1‑94 (MQ=60)

     CTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACC                                                                                          <  SRR4302534.4412394/94‑1 (MQ=60)

     CTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACC                                                                                          <  SRR4302534.2429563/94‑1 (MQ=60)

       TTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGT                                                                                        >  SRR4302534.4120604/1‑94 (MQ=60)

        TACCGTTACGGAAGCTGGGATCGAGTCGGGCCTGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCCCTTGTAGCACGGCGACACCGTC                                                                                       >  SRR4302534.107061/1‑94 (MQ=60)

        TACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTC                                                                                       >  SRR4302534.836428/1‑94 (MQ=60)

          CCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTG                                                                                     >  SRR4302534.6572820/1‑94 (MQ=60)

           CGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGG                                                                                    >  SRR4302534.1321558/1‑94 (MQ=60)

           CGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGG                                                                                    >  SRR4302534.2652162/1‑94 (MQ=60)

            GTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGA                                                                                   <  SRR4302534.3137054/94‑1 (MQ=60)

            GTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGA                                                                                   <  SRR4302534.2137141/94‑1 (MQ=60)

                   AAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCA                                                                            >  SRR4302534.1304689/1‑94 (MQ=60)

                    AGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAG                                                                           >  SRR4302534.2778445/1‑94 (MQ=60)

                     GCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGA                                                                          <  SRR4302534.1125704/94‑1 (MQ=60)

                     GCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGA                                                                          <  SRR4302534.4307175/94‑1 (MQ=60)

                      CTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAA                                                                         <  SRR4302534.1120236/94‑1 (MQ=60)

                      CTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAA                                                                         <  SRR4302534.6115741/94‑1 (MQ=60)

                       TGGGATCGAGTCGGGCATGGGCGTCGGGCTAGCCTACCCACGCTATTTCATCGCCCATTTGTAGCACGGAGTCACCGTCTGGATTTGTCAGAAT                                                                        >  SRR4302534.845123/1‑94 (MQ=60)

                       TGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAAT                                                                        >  SRR4302534.2177402/1‑94 (MQ=60)

                       TGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAAT                                                                        >  SRR4302534.5230319/1‑94 (MQ=60)

                        GGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATC                                                                       <  SRR4302534.5061534/94‑1 (MQ=60)

                         GGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCC                                                                      <  SRR4302534.6038032/94‑1 (MQ=60)

                         GGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCC                                                                      >  SRR4302534.2712393/1‑94 (MQ=60)

                            TCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGT                                                                   <  SRR4302534.5705775/94‑1 (MQ=60)

                             CGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTT                                                                  <  SRR4302534.3723262/94‑1 (MQ=60)

                             CGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTT                                                                  <  SRR4302534.946267/94‑1 (MQ=60)

                             CGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTT                                                                  <  SRR4302534.3171866/94‑1 (MQ=60)

                             CGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTT                                                                  <  SRR4302534.1812087/94‑1 (MQ=60)

                               AGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTAC                                                                >  SRR4302534.2192226/1‑94 (MQ=60)

                                GTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACG                                                               <  SRR4302534.3358636/94‑1 (MQ=60)

                                  CGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTC                                                             >  SRR4302534.3820346/1‑94 (MQ=60)

                                  CGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTC                                                             <  SRR4302534.4862883/94‑1 (MQ=60)

                                   GGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCG                                                            >  SRR4302534.61094/1‑94 (MQ=60)

                                   GGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCG                                                            <  SRR4302534.4547203/94‑1 (MQ=60)

                                   GGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCG                                                            <  SRR4302534.4524868/94‑1 (MQ=60)

                                   GGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCG                                                            >  SRR4302534.5169995/1‑94 (MQ=60)

                                    GGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGA                                                           >  SRR4302534.5435996/1‑94 (MQ=60)

                                     GCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAA                                                          >  SRR4302534.4891272/1‑94 (MQ=60)

                                     GCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAA                                                          >  SRR4302534.325431/1‑94 (MQ=60)

                                      CATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAAT                                                         >  SRR4302534.3884728/1‑94 (MQ=60)

                                      CATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAAT                                                         >  SRR4302534.3664813/1‑94 (MQ=60)

                                      CATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAAA                                                         <  SRR4302534.2165714/94‑1 (MQ=60)

                                      CATGGGCGTCGGGATAGCCTAACAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACTGTCTGGATCTGCCAGACTCCCGTTACGgcggaa                                                         >  SRR4302534.2123757/1‑88 (MQ=60)

                                       ATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATA                                                        >  SRR4302534.5908307/1‑94 (MQ=60)

                                       ATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATA                                                        >  SRR4302534.5864765/1‑94 (MQ=60)

                                        TGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGGCCATTTGTAGCACGGCGTCACCGTCTGGAGTTGCCAGAATCCCGTTACGTCGAATAG                                                       >  SRR4302534.3926346/1‑94 (MQ=60)

                                          GGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGT                                                     <  SRR4302534.5462544/94‑1 (MQ=60)

                                           GCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTT                                                    <  SRR4302534.4461595/94‑1 (MQ=60)

                                           GCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTT                                                    <  SRR4302534.4768919/94‑1 (MQ=60)

                                           GCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTT                                                    <  SRR4302534.5679371/94‑1 (MQ=60)

                                           GCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTT                                                    <  SRR4302534.1366169/94‑1 (MQ=60)

                                            CGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTC                                                   <  SRR4302534.5824060/94‑1 (MQ=60)

                                            CGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTC                                                   <  SRR4302534.5538651/94‑1 (MQ=60)

                                             GTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCA                                                  <  SRR4302534.3853450/94‑1 (MQ=60)

                                             GTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCA                                                  >  SRR4302534.5172839/1‑94 (MQ=60)

                                             GTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCA                                                  <  SRR4302534.6040665/94‑1 (MQ=60)

                                              TCGGTATAGCCTACCAACGCTATGTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAA                                                 <  SRR4302534.498122/94‑1 (MQ=60)

                                               CGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAAT                                                >  SRR4302534.4223987/1‑94 (MQ=60)

                                                GGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATG                                               <  SRR4302534.5638454/94‑1 (MQ=60)

                                                GGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATG                                               >  SRR4302534.2061936/1‑94 (MQ=60)

                                                GGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATG                                               <  SRR4302534.2857948/94‑1 (MQ=60)

                                                 GGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGT                                              <  SRR4302534.3464466/94‑1 (MQ=60)

                                                 GGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGT                                              >  SRR4302534.2810262/1‑94 (MQ=60)

                                                 GGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGT                                              <  SRR4302534.4606905/94‑1 (MQ=60)

                                                  GATAGCCTACCATCGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGTATTTGCCAGACTCCCGTTACGTCGAATACGTTCAATGTA                                             <  SRR4302534.490892/94‑1 (MQ=60)

                                                  GATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTA                                             <  SRR4302534.386728/94‑1 (MQ=60)

                                                  GATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTA                                             >  SRR4302534.5740583/1‑94 (MQ=60)

                                                    TAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGC                                           >  SRR4302534.5458913/1‑94 (MQ=60)

                                                    TAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGC                                           >  SRR4302534.5953910/1‑94 (MQ=60)

                                                       CCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGC                                        >  SRR4302534.610892/1‑94 (MQ=60)

                                                       CCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGC                                        >  SRR4302534.363208/1‑94 (MQ=60)

                                                        CTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATTCGTTCAATGTAGCAGCC                                       <  SRR4302534.524864/94‑1 (MQ=60)

                                                         TACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCG                                      >  SRR4302534.5186352/1‑94 (MQ=60)

                                                          ACCAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGG                                     <  SRR4302534.321827/94‑1 (MQ=60)

                                                            CAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCTTCTGGATTTGCCAGAATCTCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTT                                   <  SRR4302534.6080464/94‑1 (MQ=60)

                                                            CAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTT                                   >  SRR4302534.3628728/1‑94 (MQ=60)

                                                            CAACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTT                                   >  SRR4302534.5638168/1‑94 (MQ=60)

                                                             AACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTT                                  >  SRR4302534.3414498/1‑94 (MQ=60)

                                                             AACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTT                                  >  SRR4302534.5334789/1‑94 (MQ=60)

                                                             AACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTT                                  <  SRR4302534.1756242/94‑1 (MQ=60)

                                                              ACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTG                                 >  SRR4302534.6146512/1‑94 (MQ=60)

                                                              ACGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTG                                 <  SRR4302534.5572509/94‑1 (MQ=60)

                                                               CGCTATTTCATCGCTCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGT                                <  SRR4302534.891680/94‑1 (MQ=60)

                                                               CGCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGT                                >  SRR4302534.4554655/1‑94 (MQ=60)

                                                                GCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTC                               <  SRR4302534.6127135/94‑1 (MQ=60)

                                                                GCTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTC                               <  SRR4302534.5459041/94‑1 (MQ=60)

                                                                GCTATTTCAGCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGACGAATACGTTCAATGTAGCAGCCGGTTTGTC                               <  SRR4302534.1300867/94‑1 (MQ=60)

                                                                 CTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCG                              >  SRR4302534.2945674/1‑94 (MQ=60)

                                                                 CTATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCG                              >  SRR4302534.2212025/1‑94 (MQ=60)

                                                                  TATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGA                             >  SRR4302534.467562/1‑94 (MQ=60)

                                                                   ATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGTCGGTTTGTCGAT                            >  SRR4302534.1365442/1‑94 (MQ=60)

                                                                   ATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGAT                            <  SRR4302534.97092/94‑1 (MQ=60)

                                                                   ATTTCATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGAT                            >  SRR4302534.3094627/1‑94 (MQ=60)

                                                                     TTCATCGCCTATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAA                          <  SRR4302534.2859383/94‑1 (MQ=60)

                                                                      TCATCGCCCATCTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAA                         <  SRR4302534.5878427/94‑1 (MQ=60)

                                                                       CATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAAT                        <  SRR4302534.2306285/94‑1 (MQ=60)

                                                                       CATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAAT                        <  SRR4302534.4863798/94‑1 (MQ=60)

                                                                       CATCGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAAT                        >  SRR4302534.4339245/1‑94 (MQ=60)

                                                                          CGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACC                     <  SRR4302534.2043982/94‑1 (MQ=60)

                                                                          CGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACC                     >  SRR4302534.4469822/1‑94 (MQ=60)

                                                                          CGCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACC                     <  SRR4302534.5924720/94‑1 (MQ=60)

                                                                           GCCCATTTTTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCC                    <  SRR4302534.4152429/94‑1 (MQ=60)

                                                                           GCCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCC                    >  SRR4302534.5233956/1‑94 (MQ=60)

                                                                            CCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCA                   <  SRR4302534.157215/94‑1 (MQ=60)

                                                                            CCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCA                   >  SRR4302534.1937629/1‑94 (MQ=60)

                                                                            CCCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCA                   <  SRR4302534.3264991/94‑1 (MQ=60)

                                                                             CCATTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAG                  >  SRR4302534.3304087/1‑94 (MQ=60)

                                                                               ATTTGTATCACGCCGTCACGGTCTGGATTTGCCAGCATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTT                <  SRR4302534.5310165/94‑1 (MQ=60)

                                                                                TTTGTAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGACGAATACGATCAATGTAGCAGGCGGTTTGTCGATAAATACCCAGCTC               >  SRR4302534.3949812/1‑94 (MQ=60)

                                                                                    TAGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGC           >  SRR4302534.5611299/1‑94 (MQ=60)

                                                                                     AGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTAGGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCA          <  SRR4302534.3376388/94‑1 (MQ=60)

                                                                                     AGCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATGCCCAGTTCACGCA          <  SRR4302534.205703/94‑1 (MQ=60)

                                                                                      GCACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAG         <  SRR4302534.6469597/94‑1 (MQ=60)

                                                                                        ACGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGAT       >  SRR4302534.6410287/1‑94 (MQ=60)

                                                                                         CGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATT      >  SRR4302534.551394/1‑94 (MQ=60)

                                                                                         CGGCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATT      <  SRR4302534.203950/94‑1 (MQ=60)

                                                                                           GCGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTT    >  SRR4302534.1822142/1‑94 (MQ=60)

                                                                                            CGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACTCAGATCACTCAGATTTTT   >  SRR4302534.638643/1‑94 (MQ=60)

                                                                                            CGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTT   <  SRR4302534.3070367/94‑1 (MQ=60)

                                                                                            CGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTT   <  SRR4302534.2804310/94‑1 (MQ=60)

                                                                                            CGTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTT   <  SRR4302534.5201959/94‑1 (MQ=60)

                                                                                             GTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG  >  SRR4302534.4091563/1‑94 (MQ=60)

                                                                                             GTCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG  <  SRR4302534.515490/94‑1 (MQ=60)

AACTTCTTTACCGTTACGGAAGCTGGGATCGAGTCGGGCATGGGCGTCGGGATAGCCTACCAACGCTATTTCATCGCCCATTTGTAGCACGGCATCACCGTCTGGATTTGCCAGAATCCCGTTACGTCGAATACGTTCAATGTAGCAGCCGGTTTGTCGATAAATACCCAGTTCACGCAGATTTTTG  >  NC_000913/888167‑888353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`