Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 976,763 G→A A405A (GCG→GCA)  mukB → MukB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913976,7630GA100.0% 868.5 / NA 228A405A (GCG→GCA) mukBMukB
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (111/117);  total (111/117)

Only 100 of 229 total aligned reads displayed.

CGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCGCTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTT  >  NC_000913/976673‑976852
                                                                                          |                                                                                         
cGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACt                                                                                         >  1:5605823/1‑93 (MQ=255)
 gAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTg                                                                                        >  1:1908879/1‑93 (MQ=255)
 gAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTg                                                                                        >  1:1935207/1‑93 (MQ=255)
  aaCGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTgg                                                                                       <  2:1977548/93‑1 (MQ=255)
   aCGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGACCTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGa                                                                                      >  2:4645153/1‑93 (MQ=255)
    cGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGAc                                                                                     <  1:4674568/93‑1 (MQ=255)
     gCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACg                                                                                    >  2:4719436/1‑93 (MQ=255)
          cAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAg                                                                               >  1:4125645/1‑93 (MQ=255)
           aaGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGc                                                                              >  2:4196078/1‑93 (MQ=255)
            agagAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCa                                                                             >  1:5558241/1‑93 (MQ=255)
            agagAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCa                                                                             >  1:3902649/1‑93 (MQ=255)
            agagAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCa                                                                             <  1:155953/93‑1 (MQ=255)
            agagAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCa                                                                             >  1:437135/1‑93 (MQ=255)
            agagAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCa                                                                             <  1:2707780/93‑1 (MQ=255)
              agaATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCaaa                                                                           <  2:2286318/93‑1 (MQ=255)
               gaATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAAc                                                                          <  2:1041012/93‑1 (MQ=255)
                aaTGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAAcg                                                                         <  1:606952/93‑1 (MQ=255)
                 aTGAGGTTCGTGCGGAAGCTGCCTAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCGGCAAAcgc                                                                        <  1:6309723/93‑1 (MQ=255)
                 aTGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAAcgc                                                                        >  2:3098441/1‑93 (MQ=255)
                  tGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAAcgcg                                                                       >  2:568828/1‑93 (MQ=255)
                       cTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGa                                                                  <  1:5114321/93‑1 (MQ=255)
                       cTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGa                                                                  >  1:3583774/1‑93 (MQ=255)
                        tCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGAt                                                                 <  2:5604936/93‑1 (MQ=255)
                        tCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGAt                                                                 >  1:6383603/1‑93 (MQ=255)
                          gTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCACACGCGCGCGATcc                                                               >  2:718271/1‑93 (MQ=255)
                          gTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATcc                                                               <  2:5096545/93‑1 (MQ=255)
                           tGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCa                                                              <  2:5450691/93‑1 (MQ=255)
                           tGCGGAAGCTGCCGAACAGGAAGTGGACGAGCTGAAATGCCATCATGCTGACGACCTGCAGGCATTGGACGTCCTGCAAACGCGCGTGATCCa                                                              >  1:6478779/1‑93 (MQ=255)
                             cGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGt                                                            <  1:1856300/93‑1 (MQ=255)
                             cGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGt                                                            <  2:148007/93‑1 (MQ=255)
                             cGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAAAGCGCGCGATCCAGt                                                            >  1:3037557/1‑93 (MQ=255)
                             cGGAAGCTGCCGAACAGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGt                                                            <  1:1335168/93‑1 (MQ=255)
                              ggAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGta                                                           >  1:3241938/1‑93 (MQ=255)
                                aaGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGtata                                                         <  1:2675975/93‑1 (MQ=255)
                                aaGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGtata                                                         <  1:2414007/93‑1 (MQ=255)
                                aaGCTGCCGAACTGGAAGAGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGgata                                                         >  2:6347796/1‑93 (MQ=255)
                                 aGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATaa                                                        >  1:1973998/1‑93 (MQ=255)
                                  gCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAAc                                                       >  1:4729989/1‑93 (MQ=255)
                                   cTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAAcc                                                      <  2:1108236/93‑1 (MQ=255)
                                   cTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAAcc                                                      >  2:824949/1‑93 (MQ=255)
                                    tGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCa                                                     >  1:1982392/1‑93 (MQ=255)
                                          aCTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGAt                                               >  1:5885947/1‑93 (MQ=255)
                                           cTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGAtt                                              <  2:2629945/93‑1 (MQ=255)
                                             ggAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgc                                            >  2:190500/1‑93 (MQ=255)
                                             ggAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgc                                            >  1:3510119/1‑93 (MQ=255)
                                               aaGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACTTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgctg                                          <  2:4526573/93‑1 (MQ=255)
                                               aaGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgctg                                          >  1:5906141/1‑93 (MQ=255)
                                               aaGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgctg                                          <  1:4173879/93‑1 (MQ=255)
                                               aaGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgctg                                          <  1:2494654/93‑1 (MQ=255)
                                                aGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATtgctgc                                         <  2:1311619/93‑1 (MQ=255)
                                                 gTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTgcg                                        >  2:2571587/1‑93 (MQ=255)
                                                 gTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGAAGTCCAGAAAACGCGCGCGATCCAGTATAACAAGGCGATTGCTgcg                                        >  1:5012665/1‑93 (MQ=255)
                                                   ggACGAGCTTAAAAGCCAGCTTTCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCt                                      <  1:1717286/93‑1 (MQ=255)
                                                   ggACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCt                                      <  2:6151618/93‑1 (MQ=255)
                                                    gACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCtt                                     <  2:5232442/93‑1 (MQ=255)
                                                      cGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTaa                                   <  2:117656/93‑1 (MQ=255)
                                                       gAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAAt                                  <  1:2907678/93‑1 (MQ=255)
                                                       gAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAAt                                  >  2:1251646/1‑93 (MQ=255)
                                                        aGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATc                                 >  2:916648/1‑93 (MQ=255)
                                                        aGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATc                                 <  1:3781205/93‑1 (MQ=255)
                                                         gCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATct                                >  2:4919390/1‑92 (MQ=255)
                                                         gCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCg                                >  2:3219670/1‑93 (MQ=255)
                                                          cTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGt                               <  2:4085672/93‑1 (MQ=255)
                                                          cTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGt                               >  1:6146977/1‑93 (MQ=255)
                                                          cTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGt                               <  1:5508747/93‑1 (MQ=255)
                                                          cTGAAAAGCCAGCTGGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGt                               <  1:4798959/93‑1 (MQ=255)
                                                           tGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTg                              <  2:342956/93‑1 (MQ=255)
                                                           tGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTg                              <  2:2387201/93‑1 (MQ=255)
                                                            gAAAAGCCAGCTTTCTAACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGTGATTGCTGCGCTTAATCGTGc                             <  2:96018/93‑1 (MQ=255)
                                                            gAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGc                             >  2:1845010/1‑93 (MQ=255)
                                                             aaaaGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGcc                            <  2:6042174/93‑1 (MQ=255)
                                                             aaaaGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGcc                            <  1:5083448/93‑1 (MQ=255)
                                                               aacccAGCTTGCAAACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATACCCAGGCGATTGCTGCGCTTAATCGTGCCaa                          <  1:4467222/90‑1 (MQ=255)
                                                               aaGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCaa                          <  2:5419642/93‑1 (MQ=255)
                                                                aGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCaaa                         <  2:5151979/93‑1 (MQ=255)
                                                                    aGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAAc                     >  2:248048/1‑93 (MQ=255)
                                                                     gCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACt                    >  1:1097154/1‑93 (MQ=255)
                                                                      cTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACtg                   <  2:3843687/93‑1 (MQ=255)
                                                                       ttGCTGACTACGAGCAGGCACTGGACGTCGAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACtgt                  <  1:3164046/93‑1 (MQ=255)
                                                                       ttGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACtgt                  >  1:2812911/1‑93 (MQ=255)
                                                                        tGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACtgtg                 >  1:1264788/1‑93 (MQ=255)
                                                                         gCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGc                <  2:3733221/93‑1 (MQ=255)
                                                                          cTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGcc               <  2:1665148/93‑1 (MQ=255)
                                                                           tGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCa              <  1:3351009/93‑1 (MQ=255)
                                                                            gagtACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTCCCAt             <  1:2357101/90‑1 (MQ=255)
                                                                            gACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCAt             >  2:3493920/1‑93 (MQ=255)
                                                                             aCTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATc            <  2:2798366/93‑1 (MQ=255)
                                                                             aCTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATc            >  2:3586716/1‑93 (MQ=255)
                                                                              cTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCt           >  1:5461433/1‑93 (MQ=255)
                                                                              cTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCt           <  1:3106522/93‑1 (MQ=255)
                                                                                aCCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGc         >  1:826602/1‑93 (MQ=255)
                                                                                aCCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGc         >  2:1062017/1‑93 (MQ=255)
                                                                                aCCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGc         <  1:1411824/93‑1 (MQ=255)
                                                                                aCCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGc         >  2:4616988/1‑93 (MQ=255)
                                                                                aCCAGCAGGCACTGGACGGCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGc         <  1:3255409/93‑1 (MQ=255)
                                                                                  cagcagGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCg       >  2:2088820/1‑93 (MQ=255)
                                                                                  cagcagGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCg       >  2:1525929/1‑93 (MQ=255)
                                                                                     cagGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGAc    >  2:3205166/1‑93 (MQ=255)
                                                                                      agGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACt   <  2:1993512/93‑1 (MQ=255)
                                                                                      agGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACt   <  2:5764530/93‑1 (MQ=255)
                                                                                          |                                                                                         
CGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCGCTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTT  >  NC_000913/976673‑976852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CATCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCGCTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTTAACC  >  NC_000913/976670‑976856
                                                                                             |                                                                                             
CATCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCC                                                                                               >  SRR4302534.3657941/1‑94 (MQ=60)
CATCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCA                                                                                               >  SRR4302534.4299863/1‑94 (MQ=60)
CATCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCA                                                                                               <  SRR4302534.4288211/94‑1 (MQ=60)
 ATCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCAC                                                                                              >  SRR4302534.3970777/1‑94 (MQ=60)
  TCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACT                                                                                             <  SRR4302534.4065134/94‑1 (MQ=60)
  TCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACT                                                                                             >  SRR4302534.5757454/1‑94 (MQ=60)
   CGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTG                                                                                            >  SRR4302534.3323342/1‑94 (MQ=60)
   CGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTG                                                                                            >  SRR4302534.1985806/1‑94 (MQ=60)
   CGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTG                                                                                            >  SRR4302534.4609034/1‑94 (MQ=60)
   CGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTG                                                                                            >  SRR4302534.1958693/1‑94 (MQ=60)
    GAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGG                                                                                           <  SRR4302534.486080/94‑1 (MQ=60)
    GAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGG                                                                                           >  SRR4302534.5725295/1‑94 (MQ=60)
     AACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGA                                                                                          >  SRR4302534.5127904/1‑94 (MQ=60)
     AACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGA                                                                                          >  SRR4302534.1435148/1‑94 (MQ=60)
     AACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGA                                                                                          >  SRR4302534.3657094/1‑94 (MQ=60)
       CGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACG                                                                                        <  SRR4302534.4801455/94‑1 (MQ=60)
          CAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCC                                                                                     <  SRR4302534.6274088/94‑1 (MQ=60)
          CAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCC                                                                                     >  SRR4302534.4561367/1‑94 (MQ=60)
          CAGCAAGAGAATAAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCCGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCC                                                                                     >  SRR4302534.3008193/1‑94 (MQ=60)
            GCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAG                                                                                   >  SRR4302534.4236706/1‑94 (MQ=60)
             CAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGC                                                                                  >  SRR4302534.1941627/1‑94 (MQ=60)
             CAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGC                                                                                  <  SRR4302534.1955763/94‑1 (MQ=60)
             CAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGC                                                                                  >  SRR4302534.2751822/1‑94 (MQ=60)
              AAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCA                                                                                 >  SRR4302534.448265/1‑94 (MQ=60)
              AAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCA                                                                                 <  SRR4302534.5088036/94‑1 (MQ=60)
              AAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCA                                                                                 >  SRR4302534.5708309/1‑94 (MQ=60)
              AAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCA                                                                                 >  SRR4302534.4007317/1‑94 (MQ=60)
              AAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGATTGCTGACTACCAGCAGGCACTGGTAGTCCAGCA                                                                                 >  SRR4302534.2002886/1‑94 (MQ=60)
               AGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAA                                                                                <  SRR4302534.160035/94‑1 (MQ=60)
               AGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAA                                                                                <  SRR4302534.2779280/94‑1 (MQ=60)
                GAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAA                                                                               >  SRR4302534.3334789/1‑94 (MQ=60)
                   AATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGC                                                                            <  SRR4302534.621723/94‑1 (MQ=60)
                    ATGAGGTTCGTGCGGAAGCTGCCTAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCGGCAAACGCG                                                                           <  SRR4302534.6480314/94‑1 (MQ=60)
                    ATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCG                                                                           <  SRR4302534.6052625/94‑1 (MQ=60)
                      GAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCG                                                                         >  SRR4302534.2028907/1‑94 (MQ=60)
                      GAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCG                                                                         >  SRR4302534.3616281/1‑94 (MQ=60)
                        GGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCG                                                                       >  SRR4302534.2737552/1‑94 (MQ=60)
                         GCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGA                                                                      >  SRR4302534.3680175/1‑94 (MQ=60)
                         GCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGA                                                                      >  SRR4302534.4265778/1‑94 (MQ=60)
                          CTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGAT                                                                     <  SRR4302534.5252343/94‑1 (MQ=60)
                          CTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGAT                                                                     >  SRR4302534.6556045/1‑94 (MQ=60)
                            CGTGCGGAGGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCC                                                                   <  SRR4302534.3696130/94‑1 (MQ=60)
                             GTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCA                                                                  >  SRR4302534.817470/1‑94 (MQ=60)
                             GTGCGGAAGCTGCCGAACAGGAAGTGGACGAGCTGAAATGCCATCATGCTGACGACCTGCAGGCATTGGACGTCCTGCAAACGCGCGTGATCCA                                                                  >  SRR4302534.6653387/1‑94 (MQ=42)
                               GCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAAAGCGCGCGATCCAGT                                                                >  SRR4302534.3117207/1‑94 (MQ=60)
                                CGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTA                                                               <  SRR4302534.1904609/94‑1 (MQ=60)
                                CGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTA                                                               >  SRR4302534.3328205/1‑94 (MQ=60)
                                CGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTA                                                               >  SRR4302534.3078530/1‑94 (MQ=60)
                                CGGAAGCTGCCGAACAGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTA                                                               <  SRR4302534.1370358/94‑1 (MQ=60)
                                 GGAAGCTGCGGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTAT                                                              <  SRR4302534.4805049/94‑1 (MQ=60)
                                   AAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAA                                                            >  SRR4302534.3292320/1‑94 (MQ=60)
                                   AAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAA                                                            <  SRR4302534.2808360/94‑1 (MQ=60)
                                   AAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAA                                                            <  SRR4302534.2746728/94‑1 (MQ=60)
                                   AAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAA                                                            >  SRR4302534.2025667/1‑94 (MQ=60)
                                   AAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAA                                                            <  SRR4302534.6568721/94‑1 (MQ=60)
                                   AAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAA                                                            <  SRR4302534.2478211/94‑1 (MQ=60)
                                    AGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAAC                                                           >  SRR4302534.4858437/1‑94 (MQ=60)
                                     GCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACC                                                          <  SRR4302534.695769/94‑1 (MQ=60)
                                      CTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCA                                                         >  SRR4302534.2034298/1‑94 (MQ=60)
                                      CAGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAACCGCGCGCGATCCAGTATAACCA                                                         <  SRR4302534.1449612/94‑1 (MQ=60)
                                        GCGGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGG                                                       <  SRR4302534.343076/94‑1 (MQ=60)
                                         CCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGC                                                      <  SRR4302534.185870/94‑1 (MQ=60)
                                         CCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGC                                                      <  SRR4302534.4715529/94‑1 (MQ=60)
                                            AACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGAT                                                   <  SRR4302534.514758/94‑1 (MQ=60)
                                            AACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGAT                                                   >  SRR4302534.6045765/1‑94 (MQ=60)
                                               TGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGC                                                >  SRR4302534.3604549/1‑94 (MQ=60)
                                                 GAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTG                                              <  SRR4302534.1983506/94‑1 (MQ=60)
                                                 GAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTG                                              >  SRR4302534.6066512/1‑94 (MQ=60)
                                                 GAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTG                                              <  SRR4302534.5588128/94‑1 (MQ=60)
                                                 GAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTG                                              <  SRR4302534.1360037/94‑1 (MQ=60)
                                                  AAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGC                                             <  SRR4302534.2560906/94‑1 (MQ=60)
                                                  AAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGC                                             <  SRR4302534.4286624/94‑1 (MQ=60)
                                                  AAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGC                                             >  SRR4302534.3191711/1‑94 (MQ=60)
                                                  AAGTAGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGC                                             <  SRR4302534.2920632/94‑1 (MQ=60)
                                                   AGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCG                                            <  SRR4302534.1171048/94‑1 (MQ=60)
                                                   AGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGAAGTCCAGAAAACGCGCGCGATCCAGTATAACAAGGCGATTGCTGCG                                            >  SRR4302534.5148147/1‑94 (MQ=60)
                                                      GGACGAGCTTAAAAGCCAGCTTTCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTT                                         <  SRR4302534.1761898/94‑1 (MQ=60)
                                                       GACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTA                                        <  SRR4302534.3574696/94‑1 (MQ=60)
                                                         CGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAAT                                      >  SRR4302534.3143190/1‑94 (MQ=60)
                                                          GAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATC                                     <  SRR4302534.2984002/94‑1 (MQ=60)
                                                          GAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATC                                     >  SRR4302534.6243552/1‑94 (MQ=60)
                                                           AGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCG                                    <  SRR4302534.3882728/94‑1 (MQ=60)
                                                           AGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCG                                    >  SRR4302534.5899989/1‑94 (MQ=60)
                                                            GCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGT                                   >  SRR4302534.6314144/1‑94 (MQ=60)
                                                             CTGAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTG                                  <  SRR4302534.5657346/94‑1 (MQ=60)
                                                             CTGAAAAGCCAGCTGGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTG                                  <  SRR4302534.4929268/94‑1 (MQ=60)
                                                               GAAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCC                                <  SRR4302534.1704093/94‑1 (MQ=60)
                                                                AAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCA                               <  SRR4302534.2120187/94‑1 (MQ=60)
                                                                AAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCA                               <  SRR4302534.398524/94‑1 (MQ=60)
                                                                AAAAGCCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCA                               <  SRR4302534.5220653/94‑1 (MQ=60)
                                                                  AACCCAGCTTGCAAACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATACCCAGGCGATTGCTGCGCTTAATCGTGCCAAA                             <  SRR4302534.4588029/94‑1 (MQ=60)
                                                                     CCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAA                          >  SRR4302534.5650187/1‑94 (MQ=60)
                                                                     CCAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAA                          >  SRR4302534.2089959/1‑94 (MQ=60)
                                                                      CAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAAC                         >  SRR4302534.2599780/1‑94 (MQ=60)
                                                                      CAGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAAC                         >  SRR4302534.6489484/1‑94 (MQ=60)
                                                                       AGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACT                        >  SRR4302534.1125715/1‑94 (MQ=60)
                                                                       AGCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACT                        <  SRR4302534.2426794/94‑1 (MQ=60)
                                                                        GCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTG                       <  SRR4302534.914117/94‑1 (MQ=60)
                                                                        GCTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTG                       <  SRR4302534.631009/94‑1 (MQ=60)
                                                                         CTTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGT                      >  SRR4302534.2886860/1‑94 (MQ=60)
                                                                          TTGCTGACTACGAGCAGGCACTGGACGTCGAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTG                     <  SRR4302534.3247443/94‑1 (MQ=60)
                                                                          TTGCTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTG                     >  SRR4302534.1298101/1‑94 (MQ=60)
                                                                             CTGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCA                  <  SRR4302534.5688448/94‑1 (MQ=60)
                                                                              TGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCAT                 >  SRR4302534.5257915/1‑94 (MQ=60)
                                                                              TGACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCAT                 <  SRR4302534.3440750/94‑1 (MQ=60)
                                                                               GAGTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTCCCATC                <  SRR4302534.2419661/94‑1 (MQ=60)
                                                                               GACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATC                <  SRR4302534.4232210/94‑1 (MQ=60)
                                                                                ACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCT               >  SRR4302534.6037786/1‑94 (MQ=60)
                                                                                ACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCT               >  SRR4302534.5608629/1‑94 (MQ=60)
                                                                                ACTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCT               <  SRR4302534.1551077/94‑1 (MQ=60)
                                                                                 CTACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTG              <  SRR4302534.3188220/94‑1 (MQ=60)
                                                                                  TACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGC             >  SRR4302534.847402/1‑94 (MQ=60)
                                                                                   ACCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCC            <  SRR4302534.1448967/94‑1 (MQ=60)
                                                                                   ACCAGCAGGCACTGGACGGCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCC            <  SRR4302534.3342113/94‑1 (MQ=60)
                                                                                    CCAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCG           >  SRR4302534.5238378/1‑94 (MQ=60)
                                                                                     CAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGG          >  SRR4302534.6189218/1‑94 (MQ=60)
                                                                                     CAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGG          >  SRR4302534.2527594/1‑94 (MQ=60)
                                                                                     CAGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGG          >  SRR4302534.4050462/1‑94 (MQ=60)
                                                                                      AGCAGGCACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGA         >  SRR4302534.4444470/1‑94 (MQ=60)
                                                                                            CACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTTAAC   <  SRR4302534.5725589/94‑1 (MQ=60)
                                                                                             ACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTTAACC  >  SRR4302534.2616704/1‑94 (MQ=60)
                                                                                             ACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTTAACC  >  SRR4302534.4864645/1‑94 (MQ=60)
                                                                                             ACTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTTAACC  <  SRR4302534.1582284/94‑1 (MQ=60)
                                                                                             |                                                                                             
CATCGAACGCCAGCAAGAGAATGAGGCTCGTGCGGAAGCTGCCGAACTGGAAGTGGACGAGCTGAAAAGCCAGCTTGCTGACTACCAGCAGGCGCTGGACGTCCAGCAAACGCGCGCGATCCAGTATAACCAGGCGATTGCTGCGCTTAATCGTGCCAAAGAACTGTGCCATCTGCCGGACTTAACC  >  NC_000913/976670‑976856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑