Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,024,792	G→A	G367S (GGT→AGT)	helD →	DNA helicase IV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,024,792	0	G	A	100.0%	859.1 / NA	219	G367S (GGT→AGT)	helD	DNA helicase IV
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (121/98); total (121/98)

Only 100 of 238 total aligned reads displayed.

GTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACGGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTATTA  >  NC_000913/1024702‑1024881

gTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagt                                                                                         >  1:3635696/1‑93 (MQ=255)

gTGCCAGAAAGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagt                                                                                         <  1:6030819/93‑1 (MQ=255)

  gCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagtgg                                                                                       >  1:1420050/1‑93 (MQ=255)

  gCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagtgg                                                                                       <  2:4010568/93‑1 (MQ=255)

  gCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagtgg                                                                                       <  1:4675682/93‑1 (MQ=255)

   ccAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagtggt                                                                                      <  2:5690492/93‑1 (MQ=255)

   ccAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagtggt                                                                                      <  1:1372468/93‑1 (MQ=255)

   ccAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACagtggt                                                                                      <  2:4576878/93‑1 (MQ=255)

    cAGAAGGTAACTTCTGAGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAgtggtg                                                                                     <  1:655912/93‑1 (MQ=255)

     aGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGc                                                                                    >  2:3815571/1‑93 (MQ=255)

     aGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGc                                                                                    >  2:3286020/1‑93 (MQ=255)

       aaGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGcac                                                                                  <  2:3177684/93‑1 (MQ=255)

        aGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGcaca                                                                                 >  1:5358333/1‑93 (MQ=255)

         ggTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAg                                                                                <  1:960907/93‑1 (MQ=255)

          gTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAgg                                                                               <  1:6262456/93‑1 (MQ=255)

            aaCTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCa                                                                             >  2:840661/1‑93 (MQ=255)

             aCTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAg                                                                            >  1:1338774/1‑93 (MQ=255)

               ttCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAgca                                                                          >  1:4502075/1‑91 (MQ=255)

                tCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGaaa                                                                         >  2:3370558/1‑93 (MQ=255)

                 cTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAAt                                                                        <  2:6310159/93‑1 (MQ=255)

                 cTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAAt                                                                        <  2:2970535/93‑1 (MQ=255)

                  tGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATg                                                                       <  1:3314301/93‑1 (MQ=255)

                    ggATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGCTGCACAGGCAGAAATGAt                                                                     >  2:2052806/1‑93 (MQ=255)

                      atgatgAACAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTg                                                                   <  1:6442001/93‑1 (MQ=255)

                        gatgaAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGcc                                                                 <  2:4413153/93‑1 (MQ=255)

                        gatgaAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGcc                                                                 <  2:1897942/93‑1 (MQ=255)

                          tgaAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAg                                                               >  1:2043808/1‑93 (MQ=255)

                          tgaAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAg                                                               >  2:1671352/1‑93 (MQ=255)

                           gaAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGt                                                              >  1:20590/1‑93 (MQ=255)

                             aaaaTTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGc                                                            <  1:5606384/93‑1 (MQ=255)

                               aaTTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCAc                                                          >  2:2565470/1‑93 (MQ=255)

                               aaTTACAGCATCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCAc                                                          >  2:6469619/1‑93 (MQ=255)

                                aTTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCAcc                                                         >  2:5160241/1‑93 (MQ=255)

                                aTTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCAcc                                                         <  2:3909271/93‑1 (MQ=255)

                                 ttACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCAccc                                                        <  1:1849603/93‑1 (MQ=255)

                                  tACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCg                                                       >  1:234723/1‑93 (MQ=255)

                                   aCAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGa                                                      >  2:4395979/1‑93 (MQ=255)

                                   aCAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGa                                                      >  1:5777007/1‑93 (MQ=255)

                                    cAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGaa                                                     <  1:4121201/93‑1 (MQ=255)

                                     aGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAag                                                    <  2:186799/93‑1 (MQ=255)

                                     aGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAag                                                    <  2:110037/93‑1 (MQ=255)

                                        gTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAgaga                                                 >  2:743625/1‑93 (MQ=255)

                                        gTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAgaga                                                 >  2:3969642/1‑93 (MQ=255)

                                        gTCGCCTTCCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAgaga                                                 <  1:4580410/93‑1 (MQ=255)

                                         tCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAt                                                >  2:6241030/1‑93 (MQ=255)

                                         tCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAt                                                >  1:1162794/1‑93 (MQ=255)

                                         tCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAt                                                >  1:3871194/1‑93 (MQ=255)

                                          cGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAtt                                               >  1:4332620/1‑93 (MQ=255)

                                           gCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTc                                              >  2:2183656/1‑93 (MQ=255)

                                              ttGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTcgcg                                           >  2:3662776/1‑93 (MQ=255)

                                               tGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGa                                          >  1:1465471/1‑93 (MQ=255)

                                                 ccTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATc                                        <  2:1348527/93‑1 (MQ=255)

                                                  ctctCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCt                                       <  2:1318323/93‑1 (MQ=255)

                                                  ctctCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCt                                       >  1:4267355/1‑93 (MQ=255)

                                                   tctcGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTg                                      >  2:2750156/1‑93 (MQ=255)

                                                    ctcGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGt                                     <  1:881061/93‑1 (MQ=255)

                                                    ctcGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGt                                     <  1:5313586/93‑1 (MQ=255)

                                                     tcGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGtt                                    <  2:5133479/93‑1 (MQ=255)

                                                     tcGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAAAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGtt                                    <  1:5496727/93‑1 (MQ=255)

                                                      cGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTc                                   <  1:1753146/93‑1 (MQ=255)

                                                       gCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCa                                  <  2:1726686/93‑1 (MQ=255)

                                                       gCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCa                                  >  1:2176716/1‑93 (MQ=255)

                                                         cTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGt                                >  2:1285/1‑93 (MQ=255)

                                                          tCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTa                               >  2:3069970/1‑93 (MQ=255)

                                                          tCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTa                               >  1:5926920/1‑93 (MQ=255)

                                                          tCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTa                               >  2:2663071/1‑93 (MQ=255)

                                                          tCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTa                               >  2:1447797/1‑93 (MQ=255)

                                                          ccGATCGCTGGGTAATTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTa                               <  2:2388558/92‑1 (MQ=255)

                                                             aTCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTaaag                            >  1:3666673/1‑92 (MQ=255)

                                                             aTCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAAc                            <  2:4204654/93‑1 (MQ=255)

                                                              tCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACg                           >  1:260803/1‑93 (MQ=255)

                                                              tCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACg                           >  1:2845569/1‑93 (MQ=255)

                                                              tCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACg                           >  2:3424064/1‑93 (MQ=255)

                                                               cGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGt                          >  1:2020555/1‑93 (MQ=255)

                                                                gCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTa                         >  1:3780346/1‑93 (MQ=255)

                                                                  tGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATc                       <  1:1523654/93‑1 (MQ=255)

                                                                   gggTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCa                      >  1:2125234/1‑93 (MQ=255)

                                                                    ggTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCaa                     <  1:4928384/93‑1 (MQ=255)

                                                                     gTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAg                    <  1:4874724/93‑1 (MQ=255)

                                                                      tAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGt                   <  2:689586/93‑1 (MQ=255)

                                                                        aGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTg                 >  1:5382351/1‑93 (MQ=255)

                                                                        aGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTg                 >  2:472465/1‑93 (MQ=255)

                                                                         gTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGa                >  1:2025492/1‑93 (MQ=255)

                                                                         gTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGa                >  2:5404906/1‑93 (MQ=255)

                                                                          tCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGAt               >  2:3210972/1‑93 (MQ=255)

                                                                           cTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATg              <  1:2951142/93‑1 (MQ=255)

                                                                            tGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATgg             >  1:5196797/1‑93 (MQ=255)

                                                                             gATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGc            <  1:3413692/93‑1 (MQ=255)

                                                                              aTGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGcc           >  2:1296862/1‑93 (MQ=255)

                                                                               tGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGccc          <  2:1545168/93‑1 (MQ=255)

                                                                               tGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGccc          <  2:5085339/93‑1 (MQ=255)

                                                                                gCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGcccc         >  2:866119/1‑93 (MQ=255)

                                                                                gCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGcccc         >  1:947861/1‑93 (MQ=255)

                                                                                  ggATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGt       >  1:5009336/1‑93 (MQ=255)

                                                                                  ggATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGt       <  1:2682709/93‑1 (MQ=255)

                                                                                   gATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGtt      <  2:5551739/93‑1 (MQ=255)

                                                                                   gATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGtt      >  2:2890780/1‑93 (MQ=255)

                                                                                   gATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGtt      <  1:5068943/93‑1 (MQ=255)

                                                                                   gATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGtt      >  1:3226036/1‑93 (MQ=255)

                                                                                      gCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGttatt   >  1:5860130/1‑93 (MQ=255)

GTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACGGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTATTA  >  NC_000913/1024702‑1024881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACGGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTATTAAA  >  NC_000913/1024700‑1024883

CAGTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAG                                                                                            >  SRR4302534.5797433/1‑94 (MQ=60)

 AGTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGT                                                                                           >  SRR4302534.3733423/1‑94 (MQ=60)

  GTGCCAGAAAGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTG                                                                                          <  SRR4302534.6194698/94‑1 (MQ=60)

   TGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGG                                                                                         >  SRR4302534.1457419/1‑94 (MQ=60)

    GCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGT                                                                                        <  SRR4302534.4802599/94‑1 (MQ=60)

    GCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGT                                                                                        <  SRR4302534.3315172/94‑1 (MQ=60)

     CCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTG                                                                                       <  SRR4302534.1408633/94‑1 (MQ=60)

     CCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTG                                                                                       <  SRR4302534.5606397/94‑1 (MQ=60)

      CAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGC                                                                                      >  SRR4302534.5966629/1‑94 (MQ=60)

      CAGAAGGTAACTTCTGAGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGC                                                                                      <  SRR4302534.671888/94‑1 (MQ=60)

       AGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCA                                                                                     >  SRR4302534.4242556/1‑94 (MQ=60)

         AAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACA                                                                                   >  SRR4302534.5502771/1‑94 (MQ=60)

         AAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACA                                                                                   >  SRR4302534.1505253/1‑94 (MQ=60)

          AGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAG                                                                                  <  SRR4302534.4522487/94‑1 (MQ=60)

          AGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCAATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAG                                                                                  <  SRR4302534.5388117/94‑1 (MQ=60)

           GGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGG                                                                                 <  SRR4302534.985388/94‑1 (MQ=60)

            GTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGC                                                                                <  SRR4302534.6432086/94‑1 (MQ=60)

             TAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCA                                                                               <  SRR4302534.1588231/94‑1 (MQ=60)

             TAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCA                                                                               >  SRR4302534.1450294/1‑94 (MQ=60)

              AACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAG                                                                              >  SRR4302534.1374065/1‑94 (MQ=60)

              AACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAG                                                                              >  SRR4302534.2098767/1‑94 (MQ=60)

              AACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAG                                                                              <  SRR4302534.3467006/94‑1 (MQ=60)

               ACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGA                                                                             <  SRR4302534.3305336/94‑1 (MQ=60)

                CTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGCA                                                                            >  SRR4302534.4623933/1‑94 (MQ=60)

                CTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAA                                                                            >  SRR4302534.2381142/1‑94 (MQ=60)

                  TCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAAT                                                                          >  SRR4302534.5081477/1‑94 (MQ=60)

                   CTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATG                                                                         >  SRR4302534.4133213/1‑94 (MQ=60)

                    TGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGA                                                                        <  SRR4302534.3402851/94‑1 (MQ=60)

                     GGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGAT                                                                       <  SRR4302534.1430276/94‑1 (MQ=60)

                     GGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGAT                                                                       <  SRR4302534.1299848/94‑1 (MQ=60)

                       GATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTG                                                                     <  SRR4302534.5491650/94‑1 (MQ=60)

                        ATGATGAACAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGC                                                                    <  SRR4302534.6615608/94‑1 (MQ=60)

                        ATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGC                                                                    >  SRR4302534.4427541/1‑94 (MQ=60)

                        ATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGC                                                                    >  SRR4302534.3627107/1‑94 (MQ=60)

                           ATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAG                                                                 >  SRR4302534.2097228/1‑94 (MQ=60)

                            TGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGT                                                                >  SRR4302534.21131/1‑94 (MQ=60)

                               AAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCA                                                             <  SRR4302534.5758028/94‑1 (MQ=60)

                               AAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCA                                                             <  SRR4302534.2528375/94‑1 (MQ=60)

                                   TTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCG                                                         >  SRR4302534.240869/1‑94 (MQ=60)

                                   TTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCG                                                         <  SRR4302534.1897723/94‑1 (MQ=60)

                                    TACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGA                                                        >  SRR4302534.5933715/1‑94 (MQ=60)

                                    TACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAACGATTGCCAGTGCACCCGA                                                        >  SRR4302534.4957526/1‑94 (MQ=60)

                                      CAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAG                                                      <  SRR4302534.4232104/94‑1 (MQ=60)

                                      CAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAG                                                      >  SRR4302534.3045834/1‑94 (MQ=60)

                                       AGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGA                                                     >  SRR4302534.2784839/1‑94 (MQ=60)

                                         CGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGCCTGATGCGGATGCACAGTGGTGCACGGGCAGAAATGATTGCCAGTGCCCCCGAAGAGA                                                   <  SRR4302534.5715885/94‑1 (MQ=60)

                                          GTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAT                                                  >  SRR4302534.1193310/1‑94 (MQ=60)

                                          GTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAT                                                  >  SRR4302534.3975143/1‑94 (MQ=60)

                                          GTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAT                                                  >  SRR4302534.943687/1‑94 (MQ=60)

                                          GTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAT                                                  >  SRR4302534.6623159/1‑94 (MQ=60)

                                          GTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAT                                                  >  SRR4302534.2237611/1‑94 (MQ=60)

                                          GTCGCCTTCCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGAT                                                  <  SRR4302534.4704650/94‑1 (MQ=60)

                                           TCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATT                                                 >  SRR4302534.4449768/1‑94 (MQ=60)

                                            CGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCATCCGAAGAGAGTC                                                >  SRR4302534.6171017/1‑94 (MQ=60)

                                            CGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTC                                                <  SRR4302534.6152253/94‑1 (MQ=60)

                                                TTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGA                                            >  SRR4302534.1504013/1‑94 (MQ=60)

                                                 TGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGAT                                           >  SRR4302534.951222/1‑94 (MQ=60)

                                                 TGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGAT                                           >  SRR4302534.2077873/1‑94 (MQ=60)

                                                   CCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCT                                         >  SRR4302534.4382648/1‑94 (MQ=60)

                                                   CCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCT                                         <  SRR4302534.5185259/94‑1 (MQ=60)

                                                   CCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCT                                         <  SRR4302534.665789/94‑1 (MQ=60)

                                                    CTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTG                                        >  SRR4302534.1989981/1‑94 (MQ=60)

                                                    CTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTG                                        <  SRR4302534.5515101/94‑1 (MQ=60)

                                                    CTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTG                                        >  SRR4302534.501091/1‑94 (MQ=60)

                                                    CTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTG                                        >  SRR4302534.4706545/1‑94 (MQ=60)

                                                    CTCTCGCCTCGATCGCTGGGTAAGTCTGATGCCGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTG                                        <  SRR4302534.564419/94‑1 (MQ=60)

                                                      CTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTT                                      >  SRR4302534.5151785/1‑94 (MQ=60)

                                                      CTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTT                                      >  SRR4302534.5215174/1‑94 (MQ=60)

                                                      CTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTT                                      <  SRR4302534.5456940/94‑1 (MQ=60)

                                                      CTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTT                                      <  SRR4302534.903337/94‑1 (MQ=60)

                                                      CTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTT                                      <  SRR4302534.1840795/94‑1 (MQ=60)

                                                      CTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTT                                      >  SRR4302534.1393713/1‑94 (MQ=60)

                                                       ccgccgggacCGCTGGGTAAGTCGGATGGGGATGCACAGGGGTCCACGGGCAAAAATGATCGCCAGTGCACCCGAAGAGATTCGCGATCTGTTC                                     <  SRR4302534.1158703/84‑1 (MQ=46)

                                                       TCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTC                                     <  SRR4302534.460691/94‑1 (MQ=60)

                                                       TCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTC                                     >  SRR4302534.3969170/1‑94 (MQ=60)

                                                       TCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAAAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTC                                     <  SRR4302534.5644949/94‑1 (MQ=60)

                                                        CGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCA                                    <  SRR4302534.3784543/94‑1 (MQ=60)

                                                        CGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCA                                    >  SRR4302534.2234223/1‑94 (MQ=60)

                                                        CGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCA                                    <  SRR4302534.1798670/94‑1 (MQ=60)

                                                        CGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCA                                    <  SRR4302534.1497692/94‑1 (MQ=60)

                                                         GCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAG                                   <  SRR4302534.6132898/94‑1 (MQ=60)

                                                         GCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAG                                   <  SRR4302534.6337333/94‑1 (MQ=60)

                                                          CCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGT                                  >  SRR4302534.99215/1‑94 (MQ=60)

                                                          CCTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGT                                  >  SRR4302534.3607871/1‑94 (MQ=60)

                                                          CCTCGATCGCTGGGTAAGTCAGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGT                                  >  SRR4302534.6494402/1‑94 (MQ=60)

                                                           CTCGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTA                                 >  SRR4302534.6087860/1‑94 (MQ=60)

                                                           CTCGATCGCTGGGAAAGTCTGATGCGGATGCACAGTGGGGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTA                                 >  SRR4302534.3791799/1‑94 (MQ=60)

                                                             CGATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAA                               >  SRR4302534.98274/1‑94 (MQ=60)

                                                              GATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAAG                              >  SRR4302534.3765220/1‑94 (MQ=60)

                                                               ATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACG                             >  SRR4302534.2920337/1‑94 (MQ=60)

                                                               ATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACG                             >  SRR4302534.267583/1‑94 (MQ=60)

                                                               ATCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACG                             <  SRR4302534.2104491/94‑1 (MQ=60)

                                                                TCGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGT                            >  SRR4302534.2073422/1‑94 (MQ=60)

                                                                 CGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTA                           >  SRR4302534.3881844/1‑94 (MQ=60)

                                                                 CGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTA                           >  SRR4302534.5861263/1‑94 (MQ=60)

                                                                 CGCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTA                           >  SRR4302534.5369012/1‑94 (MQ=60)

                                                                  GCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTAT                          <  SRR4302534.1904455/94‑1 (MQ=60)

                                                                  GCTGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTAT                          <  SRR4302534.4314576/94‑1 (MQ=60)

                                                                    TGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCA                        >  SRR4302534.2181197/1‑94 (MQ=60)

                                                                    TGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCA                        <  SRR4302534.1563663/94‑1 (MQ=60)

                                                                    TGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCA                        >  SRR4302534.1694195/1‑94 (MQ=60)

                                                                    TGGGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCA                        >  SRR4302534.3738674/1‑94 (MQ=60)

                                                                      GGTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAG                      <  SRR4302534.5061960/94‑1 (MQ=60)

                                                                       GTAAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGT                     <  SRR4302534.5006934/94‑1 (MQ=60)

                                                                         AAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTG                   <  SRR4302534.2209761/94‑1 (MQ=60)

                                                                         AAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTG                   <  SRR4302534.2681469/94‑1 (MQ=60)

                                                                         AAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTG                   >  SRR4302534.2687169/1‑94 (MQ=60)

                                                                         AAGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTG                   >  SRR4302534.5527333/1‑94 (MQ=60)

                                                                          AGTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGA                  >  SRR4302534.2078476/1‑94 (MQ=60)

                                                                           GTCTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGAT                 <  SRR4302534.2949022/94‑1 (MQ=60)

                                                                             CTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGG               <  SRR4302534.6083454/94‑1 (MQ=60)

                                                                             CTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGG               >  SRR4302534.5336939/1‑94 (MQ=60)

                                                                             CTGATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGG               <  SRR4302534.3028533/94‑1 (MQ=60)

                                                                               GATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCC             >  SRR4302534.4640541/1‑94 (MQ=60)

                                                                               GATGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCC             <  SRR4302534.3505392/94‑1 (MQ=60)

                                                                                 TGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCC           <  SRR4302534.207979/94‑1 (MQ=60)

                                                                                 TGCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCC           >  SRR4302534.971984/1‑94 (MQ=60)

                                                                                  GCGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCG          <  SRR4302534.681440/94‑1 (MQ=60)

                                                                                   CGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGT         >  SRR4302534.2150566/1‑94 (MQ=60)

                                                                                   CGGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGT         >  SRR4302534.5144734/1‑94 (MQ=60)

                                                                                    GGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTT        >  SRR4302534.3311726/1‑94 (MQ=60)

                                                                                    GGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTT        <  SRR4302534.2753619/94‑1 (MQ=60)

                                                                                    GGATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTT        <  SRR4302534.5605112/94‑1 (MQ=60)

                                                                                     GATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTA       <  SRR4302534.5205790/94‑1 (MQ=60)

                                                                                      ATGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTAT      >  SRR4302534.5940075/1‑94 (MQ=60)

                                                                                       TGCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTATT     >  SRR4302534.6019240/1‑94 (MQ=60)

                                                                                        GCACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGATCAGTAAACGTATCAAGTTGATcatccctttatta    >  SRR4302534.4803264/1‑81 (MQ=60)

                                                                                          ACAGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTATTAAA  >  SRR4302534.5429179/1‑94 (MQ=60)

CAGTGCCAGAAGGTAACTTCTGGGATGATGAAAAATTACAGCGTCGCCTTGCCTCTCGCCTCGATCGCTGGGTAAGTCTGATGCGGATGCACGGTGGTGCACAGGCAGAAATGATTGCCAGTGCACCCGAAGAGATTCGCGATCTGTTCAGTAAACGTATCAAGTTGATGGCCCCGTTATTAAA  >  NC_000913/1024700‑1024883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`