Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,051,163 |
Δ1 bp |
coding (94/231 nt) |
sfa → |
Sfa |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,051,162 | 0 | A | . | 99.5%
| 1028.7
/ ‑3.8
| 219 | coding (93/231 nt) | sfa | Sfa |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (99/119); minor base G (0/1); total (99/120) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 229 total aligned reads displayed.
ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC > NC_000913/1051070‑1051250
|
aTGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTa < 2:1084651/93‑1 (MQ=255)
aTGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTa > 2:5534992/1‑93 (MQ=255)
gcgcCGCTGGATTTCACAAAATAATATCAGGCTACCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTagc > 2:4934897/1‑91 (MQ=255)
cgccgcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTagcg > 1:1604476/1‑90 (MQ=255)
cgccgcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTagcg > 2:3312072/1‑90 (MQ=255)
gccgcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTagcga < 2:6317987/93‑5 (MQ=255)
ccgcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGAt < 2:900548/93‑1 (MQ=255)
gcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATaa > 1:5897243/1‑93 (MQ=255)
tGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAAcc > 1:1022342/1‑93 (MQ=255)
ggATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCt < 2:3345568/93‑1 (MQ=255)
ggATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCt > 1:5466502/1‑93 (MQ=255)
gATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTg < 2:1962438/93‑1 (MQ=255)
gATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTg < 2:706715/93‑1 (MQ=255)
aTTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGt < 1:4214422/93‑1 (MQ=255)
tttCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGtt < 2:4147144/93‑1 (MQ=255)
cacaAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGat < 2:2244423/93‑1 (MQ=255)
cacaAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGat < 1:2945492/93‑1 (MQ=255)
cacaAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGat < 1:2090096/93‑1 (MQ=255)
acaAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGatt < 2:2822286/93‑1 (MQ=255)
aaaaTAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGattat > 2:1624763/1‑93 (MQ=255)
taataTCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGaa < 2:6004766/93‑1 (MQ=255)
tatCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCt > 1:1157531/1‑93 (MQ=255)
tatCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCt < 2:1833504/93‑1 (MQ=255)
aGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCg > 1:2358019/1‑93 (MQ=255)
aGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCg > 1:4748953/1‑93 (MQ=255)
aGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCg < 1:2375373/93‑1 (MQ=255)
ggCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCgg < 1:4878849/93‑1 (MQ=255)
cTCCCTCGTGGAGCCTTTTTTATATCTGCGTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCgggg < 1:6350464/93‑1 (MQ=255)
cTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCgggg > 2:3206582/1‑93 (MQ=255)
tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGga > 2:2730081/1‑93 (MQ=255)
tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGga > 1:6208272/1‑93 (MQ=255)
cccTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGgag > 2:2874087/1‑93 (MQ=255)
cccTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGgag > 1:4578019/1‑93 (MQ=255)
ccTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGgaga > 1:3060608/1‑93 (MQ=255)
ccTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGgaga < 1:979882/93‑1 (MQ=255)
cTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGatat > 1:3100152/1‑93 (MQ=255)
cTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGAt < 1:3672972/93‑1 (MQ=255)
cTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGAt > 1:5026912/1‑93 (MQ=255)
tCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATg < 2:30631/93‑1 (MQ=255)
cGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATgg > 2:1808488/1‑93 (MQ=255)
tGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCt < 1:6471813/93‑1 (MQ=255)
ggAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCtt > 2:3743997/1‑93 (MQ=255)
gAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTta < 1:5529516/93‑1 (MQ=255)
gAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTta > 1:3948269/1‑93 (MQ=255)
cTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAAc > 2:1295287/1‑93 (MQ=255)
tttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACAt < 1:3433200/93‑1 (MQ=255)
ttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACAtt < 1:818177/93‑1 (MQ=255)
ttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTc < 1:4434118/93‑1 (MQ=255)
tataTCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCt < 1:5657647/93‑1 (MQ=255)
tataTCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCt < 1:348820/93‑1 (MQ=255)
atCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAc > 1:1558305/1‑93 (MQ=255)
tCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAcc > 2:4809006/1‑93 (MQ=255)
tCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAcc < 2:2020006/93‑1 (MQ=255)
tCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAcc > 2:4035128/1‑93 (MQ=255)
cTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCt < 2:6436317/93‑1 (MQ=255)
tGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTg < 1:214537/93‑1 (MQ=255)
tGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTg < 1:1241391/93‑1 (MQ=255)
tGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTg > 1:3264332/1‑93 (MQ=255)
gCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGa > 2:6305164/1‑93 (MQ=255)
gCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGa > 1:2590843/1‑93 (MQ=255)
gCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGa < 1:330097/93‑1 (MQ=255)
ccTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAc > 2:4607066/1‑93 (MQ=255)
ccTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAc < 2:2999989/93‑1 (MQ=255)
ccTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAc < 2:523566/93‑1 (MQ=255)
cTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAcc > 1:496442/1‑93 (MQ=255)
cTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAcc > 1:4541981/1‑93 (MQ=255)
cTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAcc < 2:2392702/93‑1 (MQ=255)
ttATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCa > 2:2315587/1‑93 (MQ=255)
tATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAg < 2:4905600/93‑1 (MQ=255)
aTTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAgg < 2:4331539/93‑1 (MQ=255)
aTTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAgg > 1:4409767/1‑93 (MQ=255)
tttttCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAggg < 2:5413611/93‑1 (MQ=255)
tttttCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAggg < 2:584627/93‑1 (MQ=255)
ttcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAc < 2:5783939/93‑1 (MQ=255)
tcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAcc > 1:3741781/1‑93 (MQ=255)
tcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAcc > 2:745662/1‑93 (MQ=255)
tcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAcc > 2:2047809/1‑93 (MQ=255)
tcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAcc < 1:771505/93‑1 (MQ=255)
cttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCg > 2:6125373/1‑93 (MQ=255)
tcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCggg > 1:5226432/1‑93 (MQ=255)
tcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCggg > 2:2272373/1‑93 (MQ=255)
aaCGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGaa < 2:3569192/93‑1 (MQ=255)
aaCGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGaa > 2:4204210/1‑93 (MQ=255)
aCGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAAc > 2:4676083/1‑93 (MQ=255)
cGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAAcc > 1:1334039/1‑93 (MQ=255)
tgtatgtaTAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAac > 1:3170274/1‑93 (MQ=255)
tgtatgtaTAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAac > 1:1866069/1‑93 (MQ=255)
tgtatgtaTAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAac > 1:6013711/1‑93 (MQ=255)
tatgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAacac > 1:2770638/1‑93 (MQ=255)
tgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCt < 1:3502158/93‑1 (MQ=255)
tgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCt > 1:3847832/1‑93 (MQ=255)
tgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCt < 1:2496041/93‑1 (MQ=255)
gtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCtt < 2:2155075/93‑1 (MQ=255)
gtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCtt < 1:4315435/93‑1 (MQ=255)
gtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCtt < 2:5921365/93‑1 (MQ=255)
gtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCtt > 2:3233987/1‑93 (MQ=255)
gtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCtt < 1:4931507/93‑1 (MQ=255)
ataGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAc < 1:2695665/93‑1 (MQ=255)
ataGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAc < 2:5051560/93‑1 (MQ=255)
ataGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAc < 2:4426987/93‑1 (MQ=255)
|
ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC > NC_000913/1051070‑1051250
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT > NC_000913/1051070‑1051256
|
ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAG > SRR4302534.478489/1‑94 (MQ=60)
GCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCG > SRR4302534.5696248/1‑94 (MQ=60)
GCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCG > SRR4302534.1646388/1‑94 (MQ=60)
GCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGAT > SRR4302534.5011094/1‑94 (MQ=60)
CCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATA > SRR4302534.1886448/1‑94 (MQ=60)
CCGCTGGATTGCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATA < SRR4302534.5069884/94‑1 (MQ=60)
CGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAA > SRR4302534.6057363/1‑94 (MQ=60)
CGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAA > SRR4302534.4589507/1‑94 (MQ=60)
GCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAAC < SRR4302534.728973/94‑1 (MQ=60)
CTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACC > SRR4302534.1048666/1‑94 (MQ=60)
CTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACC > SRR4302534.315293/1‑94 (MQ=60)
TGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCT > SRR4302534.5613850/1‑94 (MQ=60)
TGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCT < SRR4302534.3390711/94‑1 (MQ=60)
GGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTG > SRR4302534.6464097/1‑94 (MQ=60)
GATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGT < SRR4302534.2671310/94‑1 (MQ=60)
ATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTT < SRR4302534.4328092/94‑1 (MQ=60)
ATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTT < SRR4302534.5742582/94‑1 (MQ=60)
ATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTT < SRR4302534.4951853/94‑1 (MQ=60)
TCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGAT < SRR4302534.4686299/94‑1 (MQ=60)
TCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGAT < SRR4302534.2628058/94‑1 (MQ=60)
CACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATT < SRR4302534.3869975/94‑1 (MQ=60)
CACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATT < SRR4302534.2144899/94‑1 (MQ=60)
CACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATT < SRR4302534.3022790/94‑1 (MQ=60)
CAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTAT < SRR4302534.1641701/94‑1 (MQ=60)
AAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATT > SRR4302534.3807075/1‑94 (MQ=60)
AATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGA > SRR4302534.5438855/1‑94 (MQ=60)
TAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAAT < SRR4302534.5142544/94‑1 (MQ=60)
ATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCT > SRR4302534.1187897/1‑94 (MQ=60)
TATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTT < SRR4302534.1147531/94‑1 (MQ=60)
ATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTT < SRR4302534.606498/94‑1 (MQ=60)
CAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCG > SRR4302534.2420603/1‑94 (MQ=60)
CAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCG > SRR4302534.4877858/1‑94 (MQ=60)
AGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGG < SRR4302534.2438447/94‑1 (MQ=60)
AGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGG < SRR4302534.3624212/94‑1 (MQ=60)
AGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGG < SRR4302534.908366/94‑1 (MQ=60)
AGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGG < SRR4302534.3248738/94‑1 (MQ=60)
GGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGG < SRR4302534.435932/94‑1 (MQ=60)
GGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGG < SRR4302534.5011170/94‑1 (MQ=60)
GCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGG < SRR4302534.2778960/94‑1 (MQ=60)
CTCCCTCGTGGAGCCTTTTTTATATCTGCGTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGA < SRR4302534.6521956/94‑1 (MQ=60)
CTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGA > SRR4302534.6377041/1‑94 (MQ=60)
TCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAG > SRR4302534.4702191/1‑94 (MQ=60)
CCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGA > SRR4302534.3140921/1‑94 (MQ=60)
CCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGATAT > SRR4302534.3181701/1‑94 (MQ=60)
CCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGAT > SRR4302534.2367438/1‑94 (MQ=60)
CCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGAT < SRR4302534.1004885/94‑1 (MQ=60)
CCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGAT > SRR4302534.5162687/1‑94 (MQ=60)
CCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGAG > SRR4302534.82713/1‑94 (MQ=60)
CTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATG < SRR4302534.3771709/94‑1 (MQ=60)
TCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGG < SRR4302534.823204/94‑1 (MQ=60)
TCGTGGAGCCTTTTTTATATCTCCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCAATAACCTGTTGATTATTGAATCTTTCGGGGAGATGG < SRR4302534.3490159/94‑1 (MQ=60)
CGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGC < SRR4302534.3548790/94‑1 (MQ=60)
TGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTT < SRR4302534.6646136/94‑1 (MQ=60)
GGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTA > SRR4302534.4053975/1‑94 (MQ=60)
GGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTA < SRR4302534.416252/94‑1 (MQ=60)
GAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTAT < SRR4302534.5678761/94‑1 (MQ=60)
AGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATA > SRR4302534.157968/1‑94 (MQ=60)
AGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATA > SRR4302534.5038577/1‑94 (MQ=60)
CCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAAC > SRR4302534.5841935/1‑94 (MQ=60)
TTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATT < SRR4302534.3525442/94‑1 (MQ=60)
TTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTT < SRR4302534.838750/94‑1 (MQ=60)
TTTATTTCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGGTAACCTGTTGATTATTGAATCTTTCGGGGCGATGGCTTATAACATTTT > SRR4302534.4520135/1‑94 (MQ=60)
TTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCT < SRR4302534.4553847/94‑1 (MQ=60)
TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT > SRR4302534.4557124/1‑94 (MQ=60)
TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT < SRR4302534.6324777/94‑1 (MQ=60)
TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT < SRR4302534.5810813/94‑1 (MQ=60)
TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT < SRR4302534.357762/94‑1 (MQ=60)
TATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAC > SRR4302534.1599104/1‑94 (MQ=60)
TATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAC < SRR4302534.1253029/94‑1 (MQ=60)
ATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACC > SRR4302534.3271457/1‑94 (MQ=60)
TCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCT < SRR4302534.3824153/94‑1 (MQ=60)
TCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCT > SRR4302534.2797763/1‑94 (MQ=60)
TCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCT < SRR4302534.6271698/94‑1 (MQ=60)
TCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCT < SRR4302534.6573585/94‑1 (MQ=60)
CTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTG < SRR4302534.3584105/94‑1 (MQ=60)
CTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTG > SRR4302534.3351263/1‑94 (MQ=60)
TGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGA > SRR4302534.2659432/1‑94 (MQ=60)
TGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGA < SRR4302534.220165/94‑1 (MQ=60)
TGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGA < SRR4302534.1274103/94‑1 (MQ=60)
GCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAC < SRR4302534.338577/94‑1 (MQ=60)
GCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAC < SRR4302534.4547173/94‑1 (MQ=60)
CCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACC > SRR4302534.508827/1‑94 (MQ=60)
CCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACC > SRR4302534.4665105/1‑94 (MQ=60)
CCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACC > SRR4302534.3376925/1‑94 (MQ=60)
CCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACC > SRR4302534.1484366/1‑94 (MQ=60)
aatcaacaggttatCGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAG > SRR4302534.3313904/15‑94 (MQ=60)
TATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGG > SRR4302534.4528789/1‑94 (MQ=60)
TATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGG > SRR4302534.5245471/1‑94 (MQ=60)
ATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGG < SRR4302534.4014615/94‑1 (MQ=60)
TTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTA < SRR4302534.4143388/94‑1 (MQ=60)
TTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAC > SRR4302534.1326333/1‑94 (MQ=60)
TTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACC > SRR4302534.3842306/1‑94 (MQ=60)
TCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCG > SRR4302534.2187207/1‑94 (MQ=60)
TCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCG < SRR4302534.790709/94‑1 (MQ=60)
TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG < SRR4302534.2545605/94‑1 (MQ=60)
TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG > SRR4302534.5367514/1‑94 (MQ=60)
TCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGA > SRR4302534.245483/1‑94 (MQ=60)
AACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAAC > SRR4302534.3059755/1‑94 (MQ=60)
AACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAAC < SRR4302534.2423735/94‑1 (MQ=60)
AACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAAC > SRR4302534.2132521/1‑94 (MQ=60)
ACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACC > SRR4302534.1369198/1‑94 (MQ=60)
GCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAA > SRR4302534.291761/1‑94 (MQ=60)
CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC > SRR4302534.3253914/1‑94 (MQ=60)
CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC > SRR4302534.1914636/1‑94 (MQ=60)
CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC > SRR4302534.6177119/1‑94 (MQ=60)
GTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACAC > SRR4302534.2843553/1‑94 (MQ=60)
GTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACAC > SRR4302534.5160066/1‑94 (MQ=60)
TATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACC < SRR4302534.5630589/94‑1 (MQ=60)
ATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCT > SRR4302534.3951160/1‑94 (MQ=60)
TGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTT < SRR4302534.3596360/94‑1 (MQ=60)
TGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTT < SRR4302534.2562334/94‑1 (MQ=60)
GTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTA < SRR4302534.5065167/94‑1 (MQ=60)
GTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTA < SRR4302534.4432306/94‑1 (MQ=60)
TATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC < SRR4302534.1948392/94‑1 (MQ=60)
ATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACT < SRR4302534.2766892/94‑1 (MQ=60)
ATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACT < SRR4302534.3231151/94‑1 (MQ=60)
ATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACT > SRR4302534.962933/1‑94 (MQ=60)
TAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTG < SRR4302534.239761/94‑1 (MQ=60)
TAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTG > SRR4302534.1920168/1‑94 (MQ=60)
AGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGG > SRR4302534.1312041/1‑94 (MQ=60)
gtAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGC > SRR4302534.5964051/3‑94 (MQ=60)
TAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCG < SRR4302534.4136860/94‑1 (MQ=60)
AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT > SRR4302534.5873305/1‑94 (MQ=60)
AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT > SRR4302534.92033/1‑94 (MQ=60)
|
ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT > NC_000913/1051070‑1051256
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
