Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,051,163	Δ1 bp	coding (94/231 nt)	sfa →	Sfa

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,051,162	0	A	.	99.6%	1278.4 / ‑2.4	275	coding (93/231 nt)	sfa	Sfa
Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (143/131); total (144/131)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01

Only 100 of 291 total aligned reads displayed.

ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC  >  NC_000913/1051070‑1051250

aTGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTa                                                                                          >  1:8353154/1‑93 (MQ=255)

aTGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTa                                                                                          <  2:1476223/93‑1 (MQ=255)

aTGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTa                                                                                          <  1:7008966/93‑1 (MQ=255)

    gccgcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTagcga                                                                                      <  2:7508153/93‑5 (MQ=255)

       gcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATaa                                                                                  >  2:5790722/1‑93 (MQ=255)

       gcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATaa                                                                                  >  1:7564868/1‑93 (MQ=255)

       gcTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATaa                                                                                  >  2:5158194/1‑93 (MQ=255)

        cTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAAc                                                                                 >  1:2091794/1‑93 (MQ=255)

         tGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAAcc                                                                                <  2:7033078/93‑1 (MQ=255)

         tGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAAcc                                                                                <  2:3122895/93‑1 (MQ=255)

          ggATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCt                                                                               <  1:5301768/93‑1 (MQ=255)

          ggATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTAAATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCt                                                                               <  1:1575684/93‑1 (MQ=255)

            aTTTCACAAAATAATATCAGGCTCCCTCGTGGAGCGTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGAGATAAACTGt                                                                             >  1:4444242/1‑93 (MQ=255)

            aTTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGt                                                                             <  1:1157109/93‑1 (MQ=255)

             tttCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGtt                                                                            <  2:754894/93‑1 (MQ=255)

             tttCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGtt                                                                            <  2:5479861/93‑1 (MQ=255)

              ttCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTg                                                                           <  1:4857410/93‑1 (MQ=255)

               tCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGCATGTATAGT‑AGCGATAACCTGTTGa                                                                          >  2:7635938/1‑93 (MQ=255)

                cacaAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGat                                                                         >  1:7195588/1‑93 (MQ=255)

                   aaaaTAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGattat                                                                      >  1:4074823/1‑93 (MQ=255)

                   aaaaTAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGattat                                                                      >  1:548676/1‑93 (MQ=255)

                    aaaTAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGattatt                                                                     <  1:6116943/93‑1 (MQ=255)

                    aaaTAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGattatt                                                                     <  2:6312622/93‑1 (MQ=255)

                    aaaTAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGattatt                                                                     <  2:1045350/93‑1 (MQ=255)

                     aataatATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTg                                                                    <  1:6502861/93‑1 (MQ=255)

                     aataatATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGAATGTATAGT‑AGCGATAACCTGTTGATTATTg                                                                    >  1:1081956/1‑93 (MQ=255)

                       taataTCAGGCTCCCTCGAGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGat                                                                  >  2:6161680/1‑92 (MQ=255)

                          tatCAGTCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCt                                                               <  2:2217899/93‑1 (MQ=255)

                           atCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCtt                                                              >  2:3318707/1‑93 (MQ=255)

                            tCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCttt                                                             <  1:4517866/93‑1 (MQ=255)

                            tCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCttt                                                             <  1:3743200/93‑1 (MQ=255)

                             cAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTc                                                            <  2:292742/93‑1 (MQ=255)

                             cAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGGATAGT‑AGCGCTAACCTGTTGATTATTGTATGTTTc                                                            >  1:1456070/1‑93 (MQ=255)

                             cAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTGTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTc                                                            <  2:2424102/93‑1 (MQ=255)

                              aGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCg                                                           <  2:4089636/93‑1 (MQ=255)

                               ggCTCCCTCGTGGAGCCTTTTTTCTATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCgg                                                          <  2:6283997/93‑1 (MQ=255)

                               ggCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCgg                                                          <  2:3955567/93‑1 (MQ=255)

                                gCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCggg                                                         <  1:3546817/93‑1 (MQ=255)

                                  tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCgggca                                                       >  2:7462402/1‑91 (MQ=255)

                                  tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGga                                                       <  1:6173538/93‑1 (MQ=255)

                                  tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGga                                                       <  2:8112733/93‑1 (MQ=255)

                                  tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGga                                                       <  2:3382695/93‑1 (MQ=255)

                                  tCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGga                                                       <  2:8289333/93‑1 (MQ=255)

                                   cccTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGgag                                                      >  1:2390986/1‑93 (MQ=255)

                                   cccTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGgag                                                      >  2:135506/1‑93 (MQ=255)

                                      tCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATg                                                   <  1:5186065/93‑1 (MQ=255)

                                        gTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGc                                                 >  1:5809657/1‑93 (MQ=255)

                                         tGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCt                                                >  1:1013927/1‑93 (MQ=255)

                                          ggAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCtt                                               >  1:6422174/1‑93 (MQ=255)

                                           gAGCGTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAGTCTTTCGGGGAGATGGCTta                                              <  2:5327104/93‑1 (MQ=255)

                                            aGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTtat                                             >  2:4640482/1‑93 (MQ=255)

                                            aGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTtat                                             <  1:7392407/93‑1 (MQ=255)

                                            aGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTtat                                             >  1:3033555/1‑93 (MQ=255)

                                              ccTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATaa                                           >  2:1868367/1‑93 (MQ=255)

                                              ccTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATaa                                           >  2:2010464/1‑93 (MQ=255)

                                              ccTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATaa                                           >  1:3895270/1‑93 (MQ=255)

                                               cTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAAc                                          <  1:1912551/93‑1 (MQ=255)

                                                ttttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACa                                         <  2:542599/93‑1 (MQ=255)

                                                ttttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACa                                         >  2:5011100/1‑93 (MQ=255)

                                                tttttaATACCTGCCTTATTTTTCTTCAACGCTGTATGGATAGT‑AGCGATAACCTGTTGATTATGGAATCTTACGGGGAGATGGCGAATAACa                                         >  2:6688337/1‑93 (MQ=255)

                                                  ttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACAtt                                       >  1:8645180/1‑93 (MQ=255)

                                                  ttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACAtt                                       <  2:4198308/93‑1 (MQ=255)

                                                  ttttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACAtt                                       <  1:165191/93‑1 (MQ=255)

                                                    ttATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGTTTATAACCTTTc                                     <  2:5599623/93‑1 (MQ=255)

                                                     tataTCTGCCTTGTTTTTCCTCAAAGCTGAATGTATCGGAAGCGATAACCTGTTGCTTATTGTATCTTGCCGCGAGGTGGGTTATAAAATTTc                                     >  2:4918187/1‑93 (MQ=255)

                                                       tatCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTa                                  >  2:266137/1‑93 (MQ=255)

                                                        atCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAc                                 >  1:4417526/1‑93 (MQ=255)

                                                         tCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAcc                                >  1:338174/1‑93 (MQ=255)

                                                          cTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCt                               <  1:8072585/93‑1 (MQ=255)

                                                            gCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGa                             >  1:1040575/1‑93 (MQ=255)

                                                            gCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGa                             >  2:6466742/1‑93 (MQ=255)

                                                             ccTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAc                            >  2:8769554/1‑93 (MQ=255)

                                                             ccTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAc                            >  2:3674226/1‑93 (MQ=255)

                                                             ccTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAc                            <  1:800306/93‑1 (MQ=255)

                                                              cTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGAcc                           <  2:209924/93‑1 (MQ=255)

                                                               ttATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCa                          >  2:3558037/1‑93 (MQ=255)

                                                                tATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAg                         >  2:1610751/1‑93 (MQ=255)

                                                                    tttCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTa                     >  2:3373129/1‑93 (MQ=255)

                                                                    tttCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTa                     <  2:4804440/93‑1 (MQ=255)

                                                                     ttcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAc                    >  2:8571588/1‑93 (MQ=255)

                                                                     ttcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAc                    >  1:3310448/1‑93 (MQ=255)

                                                                     ttcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAc                    >  1:6856889/1‑93 (MQ=255)

                                                                      tcttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAcc                   <  1:6360645/93‑1 (MQ=255)

                                                                       cttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCg                  <  2:2540116/93‑1 (MQ=255)

                                                                       cttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCg                  >  1:1266041/1‑93 (MQ=255)

                                                                        ttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCgg                 >  2:8384484/1‑93 (MQ=255)

                                                                        ttcAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCgg                 <  1:4537019/93‑1 (MQ=255)

                                                                          taaCGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGa               <  1:6817923/92‑1 (MQ=255)

                                                                           aaCGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGaa              >  1:6635209/1‑93 (MQ=255)

                                                                              gCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCa           <  2:6072429/93‑1 (MQ=255)

                                                                               cTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCaa          <  1:4218858/93‑1 (MQ=255)

                                                                               cTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCaa          >  2:4852915/1‑93 (MQ=255)

                                                                                tgtatgtaTAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAac         >  2:5952078/1‑93 (MQ=255)

                                                                                tgtatgtaTAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAac         >  1:8444175/1‑93 (MQ=255)

                                                                                 gtatgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAaca        >  1:6666232/1‑93 (MQ=255)

                                                                                 gtatgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAaca        <  1:300037/93‑1 (MQ=255)

                                                                                  tatgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAacac       <  1:5600322/93‑1 (MQ=255)

                                                                                    tgtatAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCt     >  2:6558619/1‑93 (MQ=255)

                                                                                       ataGTAA‑CGATAACCTGGTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCATTGTAACGTGAACAAAGACCTTaa  >  2:4951404/1‑92 (MQ=255)

                                                                                       ataGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAc  >  1:3228557/1‑93 (MQ=255)

ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC  >  NC_000913/1051070‑1051250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT  >  NC_000913/1051070‑1051256

ctggGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAG                                                                                               <  SRR4302541.490674/90‑1 (MQ=60)

ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAG                                                                                               <  SRR4302541.7083525/94‑1 (MQ=60)

  GCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCG                                                                                            <  SRR4302541.4572322/94‑1 (MQ=60)

    GCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGAT                                                                                          <  SRR4302541.8767557/94‑1 (MQ=60)

    GCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGAT                                                                                          <  SRR4302541.5012140/94‑1 (MQ=60)

    GCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGACTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGAT                                                                                          <  SRR4302541.350317/94‑1 (MQ=60)

     CCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATA                                                                                         >  SRR4302541.1357007/1‑94 (MQ=60)

     CCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATA                                                                                         <  SRR4302541.3044660/94‑1 (MQ=60)

      CGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAA                                                                                        >  SRR4302541.6743532/1‑94 (MQ=60)

      CGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAA                                                                                        >  SRR4302541.7645713/1‑94 (MQ=60)

       GCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAAC                                                                                       >  SRR4302541.2112059/1‑94 (MQ=60)

        CTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACC                                                                                      >  SRR4302541.3216853/1‑94 (MQ=60)

        CTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACC                                                                                      >  SRR4302541.561104/1‑94 (MQ=60)

         TGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCT                                                                                     >  SRR4302541.8125219/1‑94 (MQ=60)

         TGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCT                                                                                     <  SRR4302541.1474696/94‑1 (MQ=60)

          GGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTG                                                                                    <  SRR4302541.5356339/94‑1 (MQ=60)

          GGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTAAATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTG                                                                                    <  SRR4302541.1591433/94‑1 (MQ=60)

          AGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTG                                                                                    <  SRR4302541.4473764/94‑1 (MQ=60)

            ATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTT                                                                                  <  SRR4302541.1168193/94‑1 (MQ=60)

            ATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTT                                                                                  >  SRR4302541.6275995/1‑94 (MQ=60)

             TGTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTG                                                                                 <  SRR4302541.5903927/94‑1 (MQ=60)

              TTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGA                                                                                <  SRR4302541.4906937/94‑1 (MQ=60)

               TCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGAT                                                                               >  SRR4302541.7272351/1‑94 (MQ=60)

                CACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATT                                                                              >  SRR4302541.4846278/1‑94 (MQ=60)

                 ACACAATAATATCAGGCTGCCTCGTGGAGCCTTTTTTATACCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTA                                                                             <  SRR4302541.3353628/94‑1 (MQ=60)

                  CAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTAT                                                                            >  SRR4302541.553848/1‑94 (MQ=60)

                  CAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTAT                                                                            >  SRR4302541.4115044/1‑94 (MQ=60)

                   AAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATT                                                                           <  SRR4302541.6814787/94‑1 (MQ=60)

                    AAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTG                                                                          <  SRR4302541.6179410/94‑1 (MQ=60)

                    AAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTG                                                                          >  SRR4302541.1603498/1‑94 (MQ=60)

                    AAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGAATGTATAGT‑AGCGATAACCTGTTGATTATTG                                                                          >  SRR4302541.1092050/1‑94 (MQ=60)

                     AATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGA                                                                         >  SRR4302541.8328541/1‑94 (MQ=60)

                     AATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGA                                                                         <  SRR4302541.6569187/94‑1 (MQ=60)

                        AATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATC                                                                      >  SRR4302541.3620165/1‑94 (MQ=60)

                         ATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCT                                                                     <  SRR4302541.8717164/94‑1 (MQ=60)

                          TATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTT                                                                    >  SRR4302541.6223129/1‑94 (MQ=60)

                           ATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTT                                                                   >  SRR4302541.6023320/1‑94 (MQ=60)

                            TCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTC                                                                  <  SRR4302541.4563455/94‑1 (MQ=60)

                            TCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTC                                                                  >  SRR4302541.1890887/1‑94 (MQ=60)

                            TCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTC                                                                  <  SRR4302541.3780874/94‑1 (MQ=60)

                            TCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTC                                                                  <  SRR4302541.3315345/94‑1 (MQ=60)

                            TCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGGATAGT‑AGCGCTAACCTGTTGATTATTGTATGTTTC                                                                  >  SRR4302541.1470281/1‑94 (MQ=60)

                             CAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCG                                                                 <  SRR4302541.2035098/94‑1 (MQ=60)

                              AGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGG                                                                >  SRR4302541.2352070/1‑94 (MQ=60)

                              AGGCTCCCTCGTGGAGCATTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGG                                                                >  SRR4302541.5572302/1‑94 (MQ=60)

                               GGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGG                                                               <  SRR4302541.5247184/94‑1 (MQ=60)

                                GCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGG                                                              <  SRR4302541.3582657/94‑1 (MQ=60)

                                 CTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGG                                                             >  SRR4302541.7270649/1‑94 (MQ=60)

                                 CTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGG                                                             >  SRR4302541.107898/1‑94 (MQ=60)

                                 CTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGA                                                             >  SRR4302541.6532695/1‑94 (MQ=60)

                                 CTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTAAAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGG                                                             >  SRR4302541.6703606/1‑94 (MQ=60)

                                  TCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAG                                                            >  SRR4302541.2414384/1‑94 (MQ=60)

                                  TCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAG                                                            <  SRR4302541.6236612/94‑1 (MQ=60)

                                   CCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGA                                                           >  SRR4302541.3644383/1‑94 (MQ=60)

                                   CCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGA                                                           >  SRR4302541.643093/1‑94 (MQ=60)

                                     CTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATG                                                         <  SRR4302541.3868043/94‑1 (MQ=60)

                                     CTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATG                                                         <  SRR4302541.3908194/94‑1 (MQ=60)

                                     CTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATG                                                         <  SRR4302541.3262084/94‑1 (MQ=60)

                                      TCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGG                                                        >  SRR4302541.3560462/1‑94 (MQ=60)

                                      TCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGG                                                        <  SRR4302541.5239417/94‑1 (MQ=60)

                                       CGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGC                                                       >  SRR4302541.528741/1‑94 (MQ=60)

                                       CGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGC                                                       >  SRR4302541.1156948/1‑94 (MQ=60)

                                       CGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGC                                                       >  SRR4302541.5868683/1‑94 (MQ=60)

                                        GTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCT                                                      >  SRR4302541.1023302/1‑94 (MQ=60)

                                        GTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCT                                                      <  SRR4302541.1669188/94‑1 (MQ=60)

                                         TGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTT                                                     >  SRR4302541.6487644/1‑94 (MQ=60)

                                         TGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTT                                                     <  SRR4302541.6632811/94‑1 (MQ=60)

                                          GGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATTTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTA                                                    >  SRR4302541.319524/1‑94 (MQ=60)

                                           GAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTAT                                                   >  SRR4302541.3064184/1‑94 (MQ=60)

                                           GAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTAT                                                   <  SRR4302541.8501836/94‑1 (MQ=60)

                                            AGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATA                                                  <  SRR4302541.7471458/94‑1 (MQ=60)

                                             GCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAA                                                 >  SRR4302541.5358612/1‑94 (MQ=60)

                                             GCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAA                                                 >  SRR4302541.3934284/1‑94 (MQ=60)

                                               CTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACA                                               >  SRR4302541.1477872/1‑94 (MQ=60)

                                               CTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACA                                               <  SRR4302541.1930943/94‑1 (MQ=60)

                                                TTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACAT                                              >  SRR4302541.6179905/1‑94 (MQ=60)

                                                 TTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATT                                             <  SRR4302541.4770200/94‑1 (MQ=60)

                                                 TTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATT                                             >  SRR4302541.8737768/1‑94 (MQ=60)

                                                  TTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTT                                            <  SRR4302541.166426/94‑1 (MQ=60)

                                                   TTTATATCTGCCTTTTTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTC                                           <  SRR4302541.6924597/94‑1 (MQ=60)

                                                    TTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCT                                          <  SRR4302541.7522497/94‑1 (MQ=60)

                                                    TTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCT                                          >  SRR4302541.8840596/1‑94 (MQ=60)

                                                     TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT                                         >  SRR4302541.4059814/1‑94 (MQ=60)

                                                     TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT                                         <  SRR4302541.8409600/94‑1 (MQ=60)

                                                     TATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTT                                         <  SRR4302541.1046908/94‑1 (MQ=60)

                                                      ATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTA                                        >  SRR4302541.8082054/1‑94 (MQ=60)

                                                       TATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAC                                       >  SRR4302541.4461841/1‑94 (MQ=60)

                                                        ATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACC                                      >  SRR4302541.341202/1‑94 (MQ=60)

                                                         TCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCT                                     <  SRR4302541.4119743/94‑1 (MQ=60)

                                                         TCTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCT                                     >  SRR4302541.1995246/1‑94 (MQ=60)

                                                          CTGCCTTATTTTTCTTCAACTCTGTATGTATAGT‑AGTGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTG                                    <  SRR4302541.6336114/94‑1 (MQ=60)

                                                          CTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTG                                    >  SRR4302541.7948911/1‑94 (MQ=60)

                                                          CTGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTG                                    <  SRR4302541.8161199/94‑1 (MQ=60)

                                                           TGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGA                                   <  SRR4302541.1265975/94‑1 (MQ=60)

                                                           TGCCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGA                                   >  SRR4302541.1050217/1‑94 (MQ=60)

                                                             CCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACC                                 <  SRR4302541.807667/94‑1 (MQ=60)

                                                             CCTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACA                                 >  SRR4302541.6978727/1‑94 (MQ=60)

                                                             CCTTATTTTTCTCCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACT                                 >  SRR4302541.6978728/1‑94 (MQ=60)

                                                              CTTATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCA                                >  SRR4302541.4569138/1‑94 (MQ=60)

                                                                TATTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGG                              <  SRR4302541.4441486/94‑1 (MQ=60)

                                                                  TTTTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGT                            >  SRR4302541.1078803/1‑94 (MQ=60)

                                                                    TTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAC                          >  SRR4302541.3343689/1‑94 (MQ=60)

                                                                    TTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAC                          >  SRR4302541.6930165/1‑94 (MQ=60)

                                                                    TTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAC                          <  SRR4302541.8691264/94‑1 (MQ=60)

                                                                    TTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAC                          >  SRR4302541.6659461/1‑94 (MQ=60)

                                                                    TTTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTAC                          >  SRR4302541.7426521/1‑94 (MQ=60)

                                                                    TTTCTTCAACGCTGGATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGGAC                          >  SRR4302541.5829166/1‑94 (MQ=60)

                                                                     TTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTAGCTGACCAGGGTACC                         <  SRR4302541.4175356/94‑1 (MQ=60)

                                                                     TTCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACC                         >  SRR4302541.1602048/1‑94 (MQ=60)

                                                                      TCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCG                        >  SRR4302541.1278631/1‑94 (MQ=60)

                                                                      TCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCG                        >  SRR4302541.5391412/1‑94 (MQ=60)

                                                                      TCTTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCG                        <  SRR4302541.6425682/94‑1 (MQ=60)

                                                                        TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG                      <  SRR4302541.4582868/94‑1 (MQ=60)

                                                                        TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG                      <  SRR4302541.7092125/94‑1 (MQ=60)

                                                                        TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG                      <  SRR4302541.8514297/94‑1 (MQ=60)

                                                                        TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG                      >  SRR4302541.4472689/1‑94 (MQ=60)

                                                                        TTCAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATGGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGG                      <  SRR4302541.3375984/94‑1 (MQ=60)

                                                                          TAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAA                    <  SRR4302541.6890881/94‑1 (MQ=60)

                                                                          CAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAA                    <  SRR4302541.6890882/94‑1 (MQ=60)

                                                                          CAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAA                    >  SRR4302541.2534015/1‑94 (MQ=60)

                                                                          CAACGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAA                    >  SRR4302541.6703235/1‑94 (MQ=60)

                                                                             CGCTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCA                 >  SRR4302541.2118313/1‑94 (MQ=60)

                                                                               CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC               >  SRR4302541.1457447/1‑94 (MQ=60)

                                                                               CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC               >  SRR4302541.4523882/1‑94 (MQ=60)

                                                                               CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC               >  SRR4302541.8535357/1‑94 (MQ=60)

                                                                               CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC               <  SRR4302541.4260847/94‑1 (MQ=60)

                                                                               CTGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAAC               <  SRR4302541.4260846/94‑1 (MQ=60)

                                                                                TGTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACA              >  SRR4302541.6734650/1‑94 (MQ=60)

                                                                                 GTATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACAC             <  SRR4302541.302668/94‑1 (MQ=60)

                                                                                  TATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACC            <  SRR4302541.5657651/94‑1 (MQ=60)

                                                                                   ATGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCT           >  SRR4302541.1176058/1‑94 (MQ=60)

                                                                                    TGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTT          <  SRR4302541.2601168/94‑1 (MQ=60)

                                                                                    TGTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTT          <  SRR4302541.729314/94‑1 (MQ=60)

                                                                                     GTATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTA         <  SRR4302541.671275/94‑1 (MQ=60)

                                                                                      TATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC        <  SRR4302541.6552443/94‑1 (MQ=60)

                                                                                      TATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTAC        >  SRR4302541.3261157/1‑94 (MQ=60)

                                                                                       ATAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACT       <  SRR4302541.7504176/94‑1 (MQ=60)

                                                                                        TAGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTG      <  SRR4302541.3352522/94‑1 (MQ=60)

                                                                                         AGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGG     >  SRR4302541.3581314/1‑94 (MQ=60)

                                                                                         AGT‑AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGG     <  SRR4302541.7368500/94‑1 (MQ=60)

                                                                                           gtAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGC    >  SRR4302541.1012797/3‑94 (MQ=60)

                                                                                           gtAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGC    <  SRR4302541.7103921/92‑1 (MQ=60)

                                                                                            TAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCG   >  SRR4302541.1216486/1‑94 (MQ=60)

                                                                                             AGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT  <  SRR4302541.4942045/94‑1 (MQ=60)

ATGCGCCGCTGGATTTCACAAAATAATATCAGGCTCCCTCGTGGAGCCTTTTTTATATCTGCCTTATTTTTCTTCAACGCTGTATGTATAGTAAGCGATAACCTGTTGATTATTGAATCTTTCGGGGAGATGGCTTATAACATTTCTTACCTGACCAGGGTACCGGGAACCAACACCTTACTGGCGT  >  NC_000913/1051070‑1051256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`