Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,062,796	A→G	M68T (ATG→ACG)	cbpA ←	curved DNA‑binding protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,062,796	0	A	G	100.0%	819.5 / NA	234	M68T (ATG→ACG)	cbpA	curved DNA‑binding protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/124); total (110/124)

Only 100 of 246 total aligned reads displayed.

AAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCT  >  NC_000913/1062706‑1062885

aagaTATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTc                                                                                         <  2:5113663/93‑1 (MQ=255)

aagaTATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTc                                                                                         >  1:2402691/1‑93 (MQ=255)

  gaTATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTg                                                                                       <  1:2893580/93‑1 (MQ=255)

    tatCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGAt                                                                                     >  2:1923461/1‑93 (MQ=255)

     atCGTCAAAATCTTCGGCGTTAAAACTCTGCCCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATc                                                                                    >  1:5934105/1‑93 (MQ=255)

     atCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATc                                                                                    <  1:1785015/93‑1 (MQ=255)

       cGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCAt                                                                                  >  1:1070142/1‑93 (MQ=255)

       cGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCAt                                                                                  <  2:3509830/93‑1 (MQ=255)

        gTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATa                                                                                 <  1:6124077/93‑1 (MQ=255)

         tCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATAc                                                                                <  2:3689460/93‑1 (MQ=255)

         tCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATAc                                                                                >  2:6315643/1‑93 (MQ=255)

          cAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACt                                                                               >  2:5343196/1‑93 (MQ=255)

           aaaaTCTTCTGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTc                                                                              <  2:5046120/93‑1 (MQ=255)

           aaaaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTc                                                                              >  1:880254/1‑93 (MQ=255)

           aaaaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTc                                                                              <  2:1224206/93‑1 (MQ=255)

           aaaaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTc                                                                              <  1:1828296/93‑1 (MQ=255)

           aaaaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTc                                                                              >  1:5170832/1‑93 (MQ=255)

            aaaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCa                                                                             >  1:6167016/1‑93 (MQ=255)

             aaTCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAg                                                                            >  2:4595738/1‑93 (MQ=255)

               tCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAgcg                                                                          <  2:1610615/93‑1 (MQ=255)

                cTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAgcgc                                                                         >  2:2957070/1‑93 (MQ=255)

                cTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAgcgc                                                                         >  2:1058433/1‑93 (MQ=255)

                cTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAgcgc                                                                         >  1:4751839/1‑93 (MQ=255)

                 ttCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCTGATCGTTGCGATGGTGCCACGCCTGATCATACTCAGcgcg                                                                        >  2:5899915/1‑93 (MQ=255)

                  tCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGa                                                                       <  1:4813186/93‑1 (MQ=255)

                  tCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGa                                                                       >  2:1468946/1‑93 (MQ=255)

                     gCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgt                                                                    <  1:5053108/93‑1 (MQ=255)

                     gCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgt                                                                    <  2:6397423/93‑1 (MQ=255)

                     gCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgt                                                                    <  2:542160/93‑1 (MQ=255)

                      cGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgtt                                                                   >  1:4623407/1‑93 (MQ=255)

                       gTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgttg                                                                  >  2:382158/1‑93 (MQ=255)

                        ttAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgttgt                                                                 <  1:2723706/93‑1 (MQ=255)

                         tAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACgttgtt                                                                >  1:3317434/1‑93 (MQ=255)

                          aaaaCTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtc                                                               <  2:488218/93‑1 (MQ=255)

                          aaaaCTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtc                                                               >  1:4007212/1‑93 (MQ=255)

                          aaaaCTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtc                                                               >  2:6306153/1‑93 (MQ=255)

                           aaaCTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtca                                                              >  2:218613/1‑93 (MQ=255)

                           aaaCTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtca                                                              >  1:5790369/1‑93 (MQ=255)

                            aaCTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtcat                                                             >  1:3925318/1‑93 (MQ=255)

                             aCTCTGACCGTCGCAATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtcatc                                                            <  1:5436591/93‑1 (MQ=255)

                              ctctGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTtcatca                                                           <  1:529516/93‑1 (MQ=255)

                                ctGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACt                                                         >  1:6453434/1‑93 (MQ=255)

                                 tGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACtt                                                        >  1:2671632/1‑93 (MQ=255)

                                  gACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTa                                                       >  2:2359880/1‑93 (MQ=255)

                                  gACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTa                                                       >  1:494888/1‑93 (MQ=255)

                                   aCCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTaa                                                      >  2:5673802/1‑93 (MQ=255)

                                    ccGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAac                                                     <  2:341432/93‑1 (MQ=255)

                                       tCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACt                                                  >  1:2981876/1‑93 (MQ=255)

                                       tCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACt                                                  <  2:5733724/93‑1 (MQ=255)

                                         gCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTc                                                <  1:5942070/93‑1 (MQ=255)

                                         gCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTc                                                <  1:1143545/93‑1 (MQ=255)

                                         gCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTc                                                <  2:127401/93‑1 (MQ=255)

                                          ccATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTcc                                               >  1:2328845/1‑93 (MQ=255)

                                           cATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTccc                                              <  1:4343568/93‑1 (MQ=255)

                                            aTGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCa                                             <  1:3583020/93‑1 (MQ=255)

                                             tggtggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAg                                            <  1:2067767/93‑1 (MQ=255)

                                               gtggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGc                                          >  2:527762/1‑93 (MQ=255)

                                                tggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCt                                         <  2:1824622/93‑1 (MQ=255)

                                                tggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCt                                         <  1:1243210/93‑1 (MQ=255)

                                                tggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTCCATCACTTAACACTTCCCAGGCt                                         <  2:4746881/93‑1 (MQ=255)

                                                 ggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCtt                                        <  1:4066165/93‑1 (MQ=255)

                                                 ggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCtt                                        >  2:1638650/1‑93 (MQ=255)

                                                 ggAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCtt                                        >  1:5864941/1‑93 (MQ=255)

                                                   aaCTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCa                                      >  1:1579564/1‑93 (MQ=255)

                                                    aCTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAg                                     >  1:2156522/1‑93 (MQ=255)

                                                    aCTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAg                                     >  2:4166072/1‑93 (MQ=255)

                                                    aCTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAg                                     >  2:710946/1‑93 (MQ=255)

                                                      tGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCg                                   >  2:2063684/1‑93 (MQ=255)

                                                      tGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCg                                   >  2:3895526/1‑93 (MQ=255)

                                                      tGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCg                                   >  2:4917074/1‑93 (MQ=255)

                                                      tGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCg                                   >  1:3512381/1‑93 (MQ=255)

                                                       gACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGa                                  >  1:83693/1‑93 (MQ=255)

                                                          ggTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACct                               >  2:3029960/1‑93 (MQ=255)

                                                           gTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTTAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACctc                              >  1:4309939/1‑93 (MQ=255)

                                                           gTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACctc                              >  1:2797770/1‑93 (MQ=255)

                                                              aaaTTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCttt                           <  1:3739134/93‑1 (MQ=255)

                                                              aaaTTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCttt                           >  1:1392832/1‑93 (MQ=255)

                                                              aaaTTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCttt                           >  1:1306164/1‑93 (MQ=255)

                                                                 ttGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGaa                        <  2:6178309/93‑1 (MQ=255)

                                                                 ttGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGaa                        <  1:3070959/93‑1 (MQ=255)

                                                                   gCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGc                      >  2:2120790/1‑93 (MQ=255)

                                                                   gCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGc                      <  2:3244642/93‑1 (MQ=255)

                                                                     ggATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCgg                    <  1:1048850/93‑1 (MQ=255)

                                                                     ggATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCgg                    >  2:4504585/1‑93 (MQ=255)

                                                                       gtCGTTGCGATGTTGGCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGc                  <  2:6052178/92‑1 (MQ=255)

                                                                       aTCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGc                  <  2:578858/93‑1 (MQ=255)

                                                                        tCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCt                 <  2:140660/93‑1 (MQ=255)

                                                                        tCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCt                 <  1:2533482/93‑1 (MQ=255)

                                                                         cGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCtt                >  2:79962/1‑93 (MQ=255)

                                                                         cGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCtt                >  1:383174/1‑93 (MQ=255)

                                                                         cGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCtt                >  1:6405254/1‑93 (MQ=255)

                                                                          gTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTc               >  2:6108531/1‑93 (MQ=255)

                                                                              cGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCa           <  2:5488748/93‑1 (MQ=255)

                                                                               gATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCAt          <  1:4440002/93‑1 (MQ=255)

                                                                                aTGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATc         >  1:5573417/1‑93 (MQ=255)

                                                                                 tGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATcc        <  1:5149922/93‑1 (MQ=255)

                                                                                 tGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATcc        <  2:2489674/93‑1 (MQ=255)

                                                                                       cacgTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCt  >  1:4712919/1‑93 (MQ=255)

                                                                                       cacgTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCt  <  2:6442141/93‑1 (MQ=255)

                                                                                       cacgTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCt  <  2:4037969/93‑1 (MQ=255)

AAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCT  >  NC_000913/1062706‑1062885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAGAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTG  >  NC_000913/1062703‑1062888

GAGAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACG                                                                                              >  SRR4302534.1775362/1‑94 (MQ=60)

 AGAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGT                                                                                             >  SRR4302534.1553598/1‑94 (MQ=60)

 AGAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGT                                                                                             >  SRR4302534.3658293/1‑94 (MQ=60)

 AGAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGT                                                                                             >  SRR4302534.55681/1‑94 (MQ=60)

  GAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTC                                                                                            <  SRR4302534.2559043/94‑1 (MQ=60)

  GAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTC                                                                                            >  SRR4302534.2466550/1‑94 (MQ=60)

   AAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCT                                                                                           <  SRR4302534.2154782/94‑1 (MQ=60)

   AAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCT                                                                                           <  SRR4302534.4864831/94‑1 (MQ=60)

   AAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCT                                                                                           <  SRR4302534.412500/94‑1 (MQ=60)

    AGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTG                                                                                          <  SRR4302534.6302571/94‑1 (MQ=60)

     GATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGA                                                                                         <  SRR4302534.2969537/94‑1 (MQ=60)

      ATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGAT                                                                                        >  SRR4302534.2890923/1‑94 (MQ=60)

       aaatgacaaaatctggggtctaaaccctccgcccggcgccagggggaAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATC                                                                                       <  SRR4302534.5389855/47‑1 (MQ=60)

       TATCGTCAAAATCTTCGGCGTTAAAACTCTGCCCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATC                                                                                       >  SRR4302534.6095252/1‑94 (MQ=60)

       TATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATC                                                                                       <  SRR4302534.4880293/94‑1 (MQ=60)

        ATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCA                                                                                      >  SRR4302534.3651203/1‑94 (MQ=60)

        ATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCA                                                                                      <  SRR4302534.1831361/94‑1 (MQ=60)

         TCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCAT                                                                                     >  SRR4302534.1097895/1‑94 (MQ=60)

         TCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCAT                                                                                     <  SRR4302534.1761500/94‑1 (MQ=60)

          CGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATA                                                                                    >  SRR4302534.5618588/1‑94 (MQ=60)

           GTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATAC                                                                                   <  SRR4302534.6290649/94‑1 (MQ=60)

             CAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTC                                                                                 >  SRR4302534.902516/1‑94 (MQ=60)

             CAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTC                                                                                 >  SRR4302534.5310206/1‑94 (MQ=60)

              AAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCA                                                                                <  SRR4302534.1875853/94‑1 (MQ=60)

              AAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCA                                                                                >  SRR4302534.6334750/1‑94 (MQ=60)

                 ATCTTCGGCGTTAAATCTCTGACCGTCGCCATGGTGGAACTGACGGTAAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCG                                                                             <  SRR4302534.4081511/94‑1 (MQ=60)

                 ATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCG                                                                             >  SRR4302534.5280143/1‑94 (MQ=60)

                 ATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCG                                                                             <  SRR4302534.266043/94‑1 (MQ=60)

                  TCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGC                                                                            >  SRR4302534.4880827/1‑94 (MQ=60)

                   CTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCG                                                                           <  SRR4302534.536694/94‑1 (MQ=60)

                   CTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCG                                                                           <  SRR4302534.6274569/94‑1 (MQ=60)

                   CTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCG                                                                           >  SRR4302534.2578497/1‑94 (MQ=60)

                    TTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGA                                                                          >  SRR4302534.4949803/1‑94 (MQ=60)

                    TTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGA                                                                          <  SRR4302534.6213137/94‑1 (MQ=60)

                     TCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGAC                                                                         <  SRR4302534.4943850/94‑1 (MQ=60)

                        GCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTT                                                                      <  SRR4302534.2033775/94‑1 (MQ=60)

                        GCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTT                                                                      >  SRR4302534.4748856/1‑94 (MQ=60)

                        GCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTT                                                                      <  SRR4302534.5189576/94‑1 (MQ=60)

                         CGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTG                                                                     >  SRR4302534.5983979/1‑94 (MQ=60)

                           TTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTT                                                                   <  SRR4302534.2795570/94‑1 (MQ=60)

                           TTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTT                                                                   >  SRR4302534.3406113/1‑94 (MQ=60)

                            TAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTC                                                                  >  SRR4302534.4114515/1‑94 (MQ=60)

                            TAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTC                                                                  <  SRR4302534.6096270/94‑1 (MQ=60)

                             AAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCA                                                                 >  SRR4302534.5947460/1‑94 (MQ=60)

                              AAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCAT                                                                >  SRR4302534.4030472/1‑94 (MQ=60)

                               AACTCTGACCGTCGCCATGGTGGAACTGACGGTTGAATTGCGGATCGTTGCGCTGTTGTCACGTCTGATCATACTCAGCGCGACGTTCTTCATC                                                               >  SRR4302534.3693371/1‑94 (MQ=60)

                               AACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATC                                                               >  SRR4302534.6571652/1‑94 (MQ=60)

                               AACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATC                                                               <  SRR4302534.702607/94‑1 (MQ=60)

                                ACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCA                                                              <  SRR4302534.2290541/94‑1 (MQ=60)

                                ACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCA                                                              >  SRR4302534.81904/1‑94 (MQ=60)

                                ACTCTGACCGTCGCAATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCA                                                              <  SRR4302534.5583001/94‑1 (MQ=60)

                                 CTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCAC                                                             <  SRR4302534.6048332/94‑1 (MQ=60)

                                 CTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCAC                                                             <  SRR4302534.542661/94‑1 (MQ=60)

                                  TCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACT                                                            >  SRR4302534.6627326/1‑94 (MQ=60)

                                   CTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTT                                                           >  SRR4302534.2742241/1‑94 (MQ=60)

                                   CTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTT                                                           <  SRR4302534.5089688/94‑1 (MQ=60)

                                    TGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTA                                                          >  SRR4302534.507238/1‑94 (MQ=60)

                                      ACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAAC                                                        >  SRR4302534.4807286/1‑94 (MQ=60)

                                       CCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACA                                                       <  SRR4302534.1146336/94‑1 (MQ=60)

                                        CGTCGCCATGGTGGAACTAACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACAC                                                      <  SRR4302534.2830064/94‑1 (MQ=60)

                                         GTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACT                                                     <  SRR4302534.1729584/94‑1 (MQ=60)

                                         GTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACT                                                     <  SRR4302534.3020717/94‑1 (MQ=60)

                                         GTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACT                                                     >  SRR4302534.3059899/1‑94 (MQ=60)

                                          TCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTT                                                    <  SRR4302534.2688903/94‑1 (MQ=60)

                                           CGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTC                                                   >  SRR4302534.3242637/1‑94 (MQ=60)

                                            GCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCC                                                  <  SRR4302534.6103400/94‑1 (MQ=60)

                                            GCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCC                                                  >  SRR4302534.5867710/1‑94 (MQ=60)

                                            GCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCC                                                  <  SRR4302534.5072919/94‑1 (MQ=60)

                                            GCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCC                                                  >  SRR4302534.2390642/1‑94 (MQ=60)

                                            GCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCC                                                  <  SRR4302534.1173486/94‑1 (MQ=60)

                                             CCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCC                                                 >  SRR4302534.465836/1‑94 (MQ=60)

                                             CCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCC                                                 <  SRR4302534.1367572/94‑1 (MQ=60)

                                             CCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCC                                                 >  SRR4302534.5301499/1‑94 (MQ=60)

                                             CCATGGTGGAACTGACGGTTAAATTGCGGATCGGTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGGTCATCACTTAACACTTCCC                                                 >  SRR4302534.3446440/1‑94 (MQ=60)

                                              CATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTatca                                                >  SRR4302534.4169896/1‑90 (MQ=60)

                                              CATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCA                                                >  SRR4302534.89278/1‑94 (MQ=60)

                                              CATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCA                                                <  SRR4302534.4460893/94‑1 (MQ=60)

                                               ATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAG                                               <  SRR4302534.3679406/94‑1 (MQ=60)

                                                TGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGG                                              <  SRR4302534.1443125/94‑1 (MQ=60)

                                                TGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGG                                              <  SRR4302534.2121845/94‑1 (MQ=60)

                                                   TGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTT                                           >  SRR4302534.6024194/1‑94 (MQ=60)

                                                   TGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTT                                           <  SRR4302534.1275976/94‑1 (MQ=60)

                                                    GGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATCCTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTC                                          <  SRR4302534.3093627/94‑1 (MQ=60)

                                                    GGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTC                                          <  SRR4302534.4175262/94‑1 (MQ=60)

                                                     GAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCA                                         >  SRR4302534.1620885/1‑94 (MQ=60)

                                                     GAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCA                                         <  SRR4302534.523878/94‑1 (MQ=60)

                                                     GAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCA                                         >  SRR4302534.6067903/1‑94 (MQ=60)

                                                      AACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAG                                        <  SRR4302534.2856827/94‑1 (MQ=60)

                                                      AACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAG                                        >  SRR4302534.2213451/1‑94 (MQ=60)

                                                        CTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCG                                      >  SRR4302534.3606868/1‑94 (MQ=60)

                                                        CTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCGTCAGCG                                      <  SRR4302534.6600361/94‑1 (MQ=60)

                                                         TGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGA                                     >  SRR4302534.2765708/1‑94 (MQ=60)

                                                         TGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGA                                     >  SRR4302534.85930/1‑94 (MQ=60)

                                                         TGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGA                                     >  SRR4302534.4181712/1‑94 (MQ=60)

                                                            CGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCT                                  >  SRR4302534.6511641/1‑94 (MQ=60)

                                                            CGGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCT                                  >  SRR4302534.2970267/1‑94 (MQ=60)

                                                             GGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTTAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTC                                 >  SRR4302534.4426711/1‑94 (MQ=60)

                                                             GGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTT                                 >  SRR4302534.4439183/1‑94 (MQ=60)

                                                             GGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTC                                 <  SRR4302534.4428949/94‑1 (MQ=60)

                                                             GGTTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTC                                 >  SRR4302534.2871348/1‑94 (MQ=60)

                                                               TTAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTT                               <  SRR4302534.127165/94‑1 (MQ=60)

                                                                TAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTT                              >  SRR4302534.1429493/1‑94 (MQ=60)

                                                                TAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTT                              <  SRR4302534.2444819/94‑1 (MQ=60)

                                                                TAAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTT                              >  SRR4302534.1340621/1‑94 (MQ=60)

                                                                 AAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTG                             >  SRR4302534.1872215/1‑94 (MQ=60)

                                                                 AAATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTG                             <  SRR4302534.3839593/94‑1 (MQ=60)

                                                                  AATTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGA                            <  SRR4302534.5491522/94‑1 (MQ=60)

                                                                    TTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAG                          <  SRR4302534.2247806/94‑1 (MQ=60)

                                                                    TTGCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAG                          <  SRR4302534.3151632/94‑1 (MQ=60)

                                                                      GCGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCG                        <  SRR4302534.5922935/94‑1 (MQ=60)

                                                                       CGGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGG                       >  SRR4302534.464352/1‑94 (MQ=60)

                                                                        GGATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGG                      <  SRR4302534.1075995/94‑1 (MQ=60)

                                                                          ATCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCT                    <  SRR4302534.3917113/94‑1 (MQ=60)

                                                                           TCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTT                   >  SRR4302534.392973/1‑94 (MQ=60)

                                                                           TCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTT                   >  SRR4302534.6578163/1‑94 (MQ=60)

                                                                           TCGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTT                   <  SRR4302534.2600697/94‑1 (MQ=60)

                                                                            CGTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTC                  <  SRR4302534.3685001/94‑1 (MQ=60)

                                                                             GTTGCGATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCG                 >  SRR4302534.3967244/1‑94 (MQ=60)

                                                                                  GATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATC            >  SRR4302534.5723937/1‑94 (MQ=60)

                                                                                  GATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATC            <  SRR4302534.4559941/94‑1 (MQ=60)

                                                                                  GATGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATC            >  SRR4302534.3652547/1‑94 (MQ=60)

                                                                                   ATGTTGCCCCGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCC           <  SRR4302534.455194/94‑1 (MQ=60)

                                                                                    TGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCG          <  SRR4302534.1240953/94‑1 (MQ=60)

                                                                                    TGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCG          <  SRR4302534.5288857/94‑1 (MQ=60)

                                                                                    TGTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCG          <  SRR4302534.1327942/94‑1 (MQ=60)

                                                                                     GTTGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGG         <  SRR4302534.3891039/94‑1 (MQ=60)

                                                                                       TGCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTT       <  SRR4302534.4928872/94‑1 (MQ=60)

                                                                                        GCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTC      <  SRR4302534.1009331/94‑1 (MQ=60)

                                                                                        GCCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTC      >  SRR4302534.5567840/1‑94 (MQ=60)

                                                                                         CCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCT     <  SRR4302534.3395410/94‑1 (MQ=60)

                                                                                         CCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCT     >  SRR4302534.1937074/1‑94 (MQ=60)

                                                                                         CCACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCT     >  SRR4302534.4840909/1‑94 (MQ=60)

                                                                                          CACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTT    <  SRR4302534.1343735/94‑1 (MQ=60)

                                                                                           ACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTT   <  SRR4302534.1180702/94‑1 (MQ=60)

                                                                                           ACGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTT   <  SRR4302534.857655/94‑1 (MQ=60)

                                                                                            CGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTG  <  SRR4302534.1185445/94‑1 (MQ=60)

                                                                                            CGTCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTG  <  SRR4302534.4837763/94‑1 (MQ=60)

GAGAAGATATCGTCAAAATCTTCGGCGTTAAAACTCTGACCGTCGCCATGGTGGAACTGACGGTTAAATTGCGGATCGTTGCGATGTTGCCACATCTGATCATACTCAGCGCGACGTTGTTCATCACTTAACACTTCCCAGGCTTCAGCGACCTCTTTGAAGCGGGCTTCGGCATCCGGTTCTTTG  >  NC_000913/1062703‑1062888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`