Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,064,328	A→G	N357S (AAT→AGT)	yccE →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,064,328	0	A	G	100.0%	873.8 / NA	248	N357S (AAT→AGT)	yccE	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (127/121); total (127/121)

Only 100 of 257 total aligned reads displayed.

ATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATG  >  NC_000913/1064238‑1064417

 tACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAgtgt                                                                                        >  1:6906784/1‑93 (MQ=255)

    cGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGc                                                                                     >  1:7738500/1‑93 (MQ=255)

    cGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGc                                                                                     >  2:6290178/1‑93 (MQ=255)

     gACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCa                                                                                    >  2:2385743/1‑93 (MQ=255)

      acacGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCAt                                                                                   >  2:4907965/1‑93 (MQ=255)

      acacGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCAt                                                                                   <  2:6091922/93‑1 (MQ=255)

      acacGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCAt                                                                                   <  2:1741996/93‑1 (MQ=255)

       cacGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATc                                                                                  >  1:8097240/1‑93 (MQ=255)

       cacGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATc                                                                                  >  1:4999868/1‑93 (MQ=255)

       cacGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATc                                                                                  <  2:2159235/93‑1 (MQ=255)

           tCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAAtc                                                                              >  1:4441501/1‑93 (MQ=255)

           tCGGATAGGACTAAAGCGGTGGAGAGTTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTGATATTAATGTGGCATCAAtt                                                                              >  2:7205257/1‑92 (MQ=255)

              gATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTcc                                                                           >  1:2550148/1‑93 (MQ=255)

              gATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTcc                                                                           >  1:7411237/1‑93 (MQ=255)

              gATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTcc                                                                           >  2:1193830/1‑93 (MQ=255)

               aTAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCt                                                                          <  1:6140189/93‑1 (MQ=255)

               aTAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCt                                                                          <  2:4585018/93‑1 (MQ=255)

               aTAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCt                                                                          <  2:8344677/93‑1 (MQ=255)

                tAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCACTCTCCtt                                                                         >  2:8214500/1‑93 (MQ=255)

                tAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCtt                                                                         >  1:2828348/1‑93 (MQ=255)

                tAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCtt                                                                         >  1:8225276/1‑93 (MQ=255)

                  ggATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTgg                                                                       <  2:5668386/93‑1 (MQ=255)

                   gATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTggg                                                                      <  2:5848660/93‑1 (MQ=255)

                   gATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTggg                                                                      >  1:2665654/1‑93 (MQ=255)

                    aTTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTgggg                                                                     <  2:8225286/93‑1 (MQ=255)

                    aTTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTgggg                                                                     >  1:5985356/1‑93 (MQ=255)

                     ttAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGga                                                                    >  1:6056042/1‑93 (MQ=255)

                     ttAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGga                                                                    >  2:6178817/1‑93 (MQ=255)

                     ttAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGga                                                                    <  1:7637814/93‑1 (MQ=255)

                     ttAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGga                                                                    >  2:1361229/1‑93 (MQ=255)

                      tAAAGCTGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGgaa                                                                   <  1:8508067/93‑1 (MQ=255)

                        aaGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGgaatg                                                                 >  2:5942164/1‑93 (MQ=255)

                        aaGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGgaatg                                                                 >  2:4043765/1‑93 (MQ=255)

                          gCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGgaatgaa                                                               >  2:1962910/1‑93 (MQ=255)

                             gTGAAGAATTTTCTTGTTTTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATcc                                                            <  2:3339521/93‑1 (MQ=255)

                             gTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATcc                                                            >  1:4752522/1‑93 (MQ=255)

                             gTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATcc                                                            >  2:3776669/1‑93 (MQ=255)

                              tGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCt                                                           <  2:3613833/93‑1 (MQ=255)

                                 agaaTTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCtttt                                                        >  2:6529843/1‑93 (MQ=255)

                                     ttttCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAAc                                                    <  2:7616525/93‑1 (MQ=255)

                                     ttttCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAAc                                                    <  1:5456435/93‑1 (MQ=255)

                                       ttCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAg                                                  <  1:1120396/93‑1 (MQ=255)

                                       ttCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAg                                                  >  1:784774/1‑93 (MQ=255)

                                       ttCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAg                                                  >  1:5926963/1‑93 (MQ=255)

                                          ttgttgTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATg                                               >  1:4479875/1‑93 (MQ=255)

                                          ttgttgTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGCCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATg                                               >  1:2972408/1‑93 (MQ=255)

                                           tgttgtTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGa                                              >  1:6377000/1‑93 (MQ=255)

                                             ttgttCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTTGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAg                                            >  2:7528543/1‑93 (MQ=255)

                                             ttgttCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAg                                            <  2:6044527/93‑1 (MQ=255)

                                               gttCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGAt                                          >  2:4937432/1‑93 (MQ=255)

                                                ttCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATc                                         <  2:635939/93‑1 (MQ=255)

                                                ttCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATc                                         >  1:4645685/1‑93 (MQ=255)

                                                 tCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCt                                        <  2:5287361/93‑1 (MQ=255)

                                                  cTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCtt                                       >  1:7967352/1‑93 (MQ=255)

                                                   tttCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTg                                      <  2:6721472/93‑1 (MQ=255)

                                                   tttCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTg                                      >  2:4295498/1‑93 (MQ=255)

                                                   tttCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTg                                      >  1:3480374/1‑93 (MQ=255)

                                                     tCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAg                                    >  1:1500438/1‑93 (MQ=255)

                                                        gATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTAt                                 >  1:7511338/1‑93 (MQ=255)

                                                         aTAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATg                                <  1:702905/93‑1 (MQ=255)

                                                         aTAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATg                                >  1:4833832/1‑93 (MQ=255)

                                                            gCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGtt                             >  2:2972069/1‑93 (MQ=255)

                                                            gCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGtt                             <  1:3243374/93‑1 (MQ=255)

                                                            gCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGtt                             <  2:241267/93‑1 (MQ=255)

                                                              aTTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTAt                           >  1:1377624/1‑93 (MQ=255)

                                                              aTTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTAt                           <  2:8556175/93‑1 (MQ=255)

                                                               tttGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTAtt                          >  2:4729157/1‑93 (MQ=255)

                                                                ttGCTCGTTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTAttt                         >  1:2296435/1‑93 (MQ=255)

                                                                ttGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTAttt                         <  2:1113492/93‑1 (MQ=255)

                                                                 tGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTa                        >  2:6790150/1‑93 (MQ=255)

                                                                    tCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTTGGGTATGAATCCTTTTCAACAGATGAAGATCTTGAGTATAGTTATTTAAta                     >  2:8664193/1‑92 (MQ=255)

                                                                    tCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATg                     >  2:5615177/1‑93 (MQ=255)

                                                                      attattTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGaa                   <  1:5345137/93‑1 (MQ=255)

                                                                        tatttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAaca                 >  1:1450477/1‑93 (MQ=255)

                                                                        tatttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAaca                 >  2:3230135/1‑93 (MQ=255)

                                                                        tatttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAaca                 >  1:1826856/1‑93 (MQ=255)

                                                                          tttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACt               <  2:8314238/93‑1 (MQ=255)

                                                                          tttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACt               <  1:3992785/93‑1 (MQ=255)

                                                                          tttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACt               <  1:2120928/93‑1 (MQ=255)

                                                                          tttattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACt               <  2:2477711/93‑1 (MQ=255)

                                                                            tattGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTgg             >  2:2600880/1‑93 (MQ=255)

                                                                             attGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGc            >  1:8445778/1‑93 (MQ=255)

                                                                             attGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGc            <  1:1660345/93‑1 (MQ=255)

                                                                             attGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGc            <  1:6485910/93‑1 (MQ=255)

                                                                             attGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGc            >  1:4815394/1‑93 (MQ=255)

                                                                             attGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGAATGGTTATTTAATGAACACTgga            >  2:2911770/1‑92 (MQ=255)

                                                                               tGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCaa          <  2:228608/93‑1 (MQ=255)

                                                                                 ttAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATc        <  2:6580077/93‑1 (MQ=255)

                                                                                 ttAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATc        <  2:2470058/93‑1 (MQ=255)

                                                                                 ttAATAGTAGTGTGGCATCAATCTCCTTGGGGAACGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATc        <  2:5723261/93‑1 (MQ=255)

                                                                                  tAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCa       >  1:730296/1‑93 (MQ=255)

                                                                                  tAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCa       <  2:5398150/93‑1 (MQ=255)

                                                                                   aaTAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCAt      >  2:6991182/1‑93 (MQ=255)

                                                                                   aaTAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCAt      <  1:8478860/93‑1 (MQ=255)

                                                                                    aTAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCAtt     >  1:6734777/1‑93 (MQ=255)

                                                                                     tagtagTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTa    >  2:4700594/1‑93 (MQ=255)

                                                                                      agtagtGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTAt   <  2:7714394/93‑1 (MQ=255)

                                                                                      agtagtGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTAt   >  2:5462167/1‑93 (MQ=255)

                                                                                      agtagtGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTAt   <  2:8433303/93‑1 (MQ=255)

                                                                                       gTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATg  <  1:1106889/93‑1 (MQ=255)

ATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATG  >  NC_000913/1064238‑1064417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TAGATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  >  NC_000913/1064235‑1064420

TAGATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAG                                                                                              <  SRR4302541.38444/94‑1 (MQ=60)

 AGATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGT                                                                                             <  SRR4302541.1014261/94‑1 (MQ=60)

 AGATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGT                                                                                             <  SRR4302541.3766000/94‑1 (MQ=60)

  GATACCTATACGTCTGATAGGATTAAAGCGGTTAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTG                                                                                            <  SRR4302541.7492153/94‑1 (MQ=60)

  GATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTG                                                                                            >  SRR4302541.286493/1‑94 (MQ=60)

  GATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTG                                                                                            <  SRR4302541.4342082/94‑1 (MQ=60)

   ATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGT                                                                                           >  SRR4302541.6980491/1‑94 (MQ=60)

      CCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGC                                                                                        >  SRR4302541.7820824/1‑94 (MQ=60)

      CCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGC                                                                                        >  SRR4302541.5721379/1‑94 (MQ=60)

       CGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCA                                                                                       <  SRR4302541.1694897/94‑1 (MQ=60)

         ACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATC                                                                                     >  SRR4302541.5051235/1‑94 (MQ=60)

         ACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATC                                                                                     >  SRR4302541.8186005/1‑94 (MQ=60)

           ACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAA                                                                                   <  SRR4302541.4816632/94‑1 (MQ=60)

             GTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATC                                                                                 >  SRR4302541.4486150/1‑94 (MQ=60)

                GGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCC                                                                              >  SRR4302541.7490504/1‑94 (MQ=60)

                GGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCC                                                                              >  SRR4302541.3357325/1‑94 (MQ=60)

                GGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCC                                                                              >  SRR4302541.2575724/1‑94 (MQ=60)

                  ATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTT                                                                            <  SRR4302541.891802/94‑1 (MQ=60)

                  ATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTT                                                                            <  SRR4302541.6202900/94‑1 (MQ=60)

                  ATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTT                                                                            >  SRR4302541.7721496/1‑94 (MQ=60)

                  ATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTT                                                                            >  SRR4302541.8314967/1‑94 (MQ=60)

                  ATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTT                                                                            >  SRR4302541.2856856/1‑94 (MQ=60)

                   TAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTG                                                                           <  SRR4302541.659333/94‑1 (MQ=60)

                     GGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGG                                                                         >  SRR4302541.2692152/1‑94 (MQ=60)

                     GGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGG                                                                         >  SRR4302541.4587977/1‑94 (MQ=60)

                      GATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGG                                                                        >  SRR4302541.6046631/1‑94 (MQ=60)

                       ATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGA                                                                       >  SRR4302541.6117932/1‑94 (MQ=60)

                        TTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAA                                                                      <  SRR4302541.8340294/94‑1 (MQ=60)

                        TTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAA                                                                      <  SRR4302541.7719265/94‑1 (MQ=60)

                         TAAAGCTGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAAT                                                                     <  SRR4302541.8599677/94‑1 (MQ=60)

                         TAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAAT                                                                     >  SRR4302541.85187/1‑94 (MQ=60)

                           AAGGGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGA                                                                   <  SRR4302541.7063025/94‑1 (MQ=60)

                           AAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGA                                                                   >  SRR4302541.7524032/1‑94 (MQ=60)

                               GGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCC                                                               <  SRR4302541.6072910/94‑1 (MQ=60)

                               GGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCC                                                               >  SRR4302541.4801080/1‑94 (MQ=60)

                               GGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCC                                                               >  SRR4302541.3624452/1‑94 (MQ=60)

                                GTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCT                                                              >  SRR4302541.4809793/1‑94 (MQ=60)

                                 TGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTT                                                             <  SRR4302541.4599432/94‑1 (MQ=60)

                                    AGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTC                                                          >  SRR4302541.7702121/1‑94 (MQ=60)

                                     GAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCA                                                         <  SRR4302541.1305816/94‑1 (MQ=60)

                                     GAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCA                                                         <  SRR4302541.1411550/94‑1 (MQ=60)

                                        TTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACA                                                      >  SRR4302541.1999582/1‑94 (MQ=60)

                                        TTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACA                                                      <  SRR4302541.5512409/94‑1 (MQ=60)

                                         TTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAG                                                     <  SRR4302541.4967754/94‑1 (MQ=60)

                                         TTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAG                                                     >  SRR4302541.5987320/1‑94 (MQ=60)

                                         TTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAG                                                     <  SRR4302541.4967755/94‑1 (MQ=60)

                                         TTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAG                                                     <  SRR4302541.5300934/94‑1 (MQ=60)

                                         TTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAG                                                     >  SRR4302541.792065/1‑94 (MQ=60)

                                          TTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGA                                                    <  SRR4302541.1130939/94‑1 (MQ=60)

                                          TTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGA                                                    <  SRR4302541.7924461/94‑1 (MQ=60)

                                            CTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATG                                                  >  SRR4302541.605628/1‑94 (MQ=60)

                                            CTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATG                                                  >  SRR4302541.6817537/1‑94 (MQ=60)

                                            CTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATG                                                  >  SRR4302541.4525019/1‑94 (MQ=60)

                                            CTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATG                                                  >  SRR4302541.837649/1‑94 (MQ=60)

                                            CTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATG                                                  <  SRR4302541.5562419/94‑1 (MQ=60)

                                            CTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGCCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATG                                                  >  SRR4302541.3002363/1‑94 (MQ=60)

                                             TTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGA                                                 >  SRR4302541.6442154/1‑94 (MQ=60)

                                              TGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAA                                                >  SRR4302541.7890256/1‑94 (MQ=60)

                                               GTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAG                                               <  SRR4302541.166904/94‑1 (MQ=60)

                                                TTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGA                                              <  SRR4302541.759359/94‑1 (MQ=60)

                                                 TGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGAT                                             <  SRR4302541.7459346/94‑1 (MQ=60)

                                                 TGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGAT                                             <  SRR4302541.1828048/94‑1 (MQ=60)

                                                  GTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATC                                            >  SRR4302541.4692990/1‑94 (MQ=60)

                                                   TTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCT                                           <  SRR4302541.2298241/94‑1 (MQ=60)

                                                    TCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTT                                          <  SRR4302541.1490983/94‑1 (MQ=60)

                                                    TCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTT                                          >  SRR4302541.8055160/1‑94 (MQ=60)

                                                     CTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTG                                         >  SRR4302541.8155654/1‑94 (MQ=60)

                                                     CTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTG                                         >  SRR4302541.3515198/1‑94 (MQ=60)

                                                       TTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAG                                       >  SRR4302541.1515287/1‑94 (MQ=60)

                                                       TTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAG                                       <  SRR4302541.8221769/94‑1 (MQ=60)

                                                       TTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAG                                       <  SRR4302541.7206459/94‑1 (MQ=60)

                                                       TTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAG                                       >  SRR4302541.1515286/1‑94 (MQ=60)

                                                          AGATATCATTTGCGCATTAATTATTGTTAATAGTTGTGTGGCATCAAGCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTAT                                    <  SRR4302541.7326029/94‑1 (MQ=60)

                                                          AGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTAT                                    <  SRR4302541.2814091/94‑1 (MQ=60)

                                                          AGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTAT                                    >  SRR4302541.4104120/1‑94 (MQ=60)

                                                          AGATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTAT                                    >  SRR4302541.7591621/1‑94 (MQ=60)

                                                           GATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATG                                   >  SRR4302541.4883107/1‑94 (MQ=60)

                                                           GATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATG                                   >  SRR4302541.3268018/1‑94 (MQ=60)

                                                           GATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATG                                   >  SRR4302541.4883105/1‑94 (MQ=60)

                                                            ATAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGG                                  <  SRR4302541.709516/94‑1 (MQ=60)

                                                             TAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGT                                 <  SRR4302541.6319513/94‑1 (MQ=60)

                                                             CAGCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTTAACAGATGAAGACCTTGAGTATGGT                                 >  SRR4302541.2737022/1‑94 (MQ=60)

                                                               GCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTA                               >  SRR4302541.6306199/1‑94 (MQ=60)

                                                               GCATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTA                               <  SRR4302541.3276114/94‑1 (MQ=60)

                                                                CATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTAT                              >  SRR4302541.1391166/1‑94 (MQ=60)

                                                                 ATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATT                             <  SRR4302541.6144471/94‑1 (MQ=60)

                                                                 ATTTGCTCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATT                             <  SRR4302541.8129860/94‑1 (MQ=60)

                                                                  TTTGCTCGTTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTT                            >  SRR4302541.2318697/1‑94 (MQ=60)

                                                                       TCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGA                       >  SRR4302541.4786909/1‑94 (MQ=60)

                                                                       TCATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGA                       >  SRR4302541.4488456/1‑94 (MQ=60)

                                                                        CATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAA                      >  SRR4302541.2183450/1‑94 (MQ=60)

                                                                         ATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAAC                     <  SRR4302541.5400088/94‑1 (MQ=60)

                                                                         ATTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAAC                     <  SRR4302541.5400086/94‑1 (MQ=60)

                                                                          TTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACA                    >  SRR4302541.1844577/1‑94 (MQ=60)

                                                                          TTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACA                    <  SRR4302541.7577062/94‑1 (MQ=60)

                                                                          TTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACA                    >  SRR4302541.1464588/1‑94 (MQ=60)

                                                                          TTATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACA                    <  SRR4302541.599487/94‑1 (MQ=60)

                                                                           TATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACAC                   <  SRR4302541.6537708/94‑1 (MQ=60)

                                                                            ATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACT                  >  SRR4302541.6833902/1‑94 (MQ=60)

                                                                            ATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACT                  <  SRR4302541.3596305/94‑1 (MQ=60)

                                                                            ATTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACT                  >  SRR4302541.8607747/1‑94 (MQ=60)

                                                                             TTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTG                 <  SRR4302541.2141455/94‑1 (MQ=60)

                                                                             TTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTG                 >  SRR4302541.3017723/1‑94 (MQ=60)

                                                                             TTTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTG                 <  SRR4302541.4032331/94‑1 (MQ=60)

                                                                              TTATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGG                <  SRR4302541.5218193/94‑1 (MQ=60)

                                                                               TATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGC               >  SRR4302541.4864490/1‑94 (MQ=60)

                                                                               TATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGC               >  SRR4302541.8536963/1‑94 (MQ=60)

                                                                                ATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCA              <  SRR4302541.6552021/94‑1 (MQ=60)

                                                                                ATTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCA              <  SRR4302541.1676726/94‑1 (MQ=60)

                                                                                 TTGTTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAA             <  SRR4302541.1329888/94‑1 (MQ=60)

                                                                                  TGTTAATAGTAGTGTGGCATCAATCTCCTTGGGTAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAAT            <  SRR4302541.2481409/94‑1 (MQ=60)

                                                                                    TTAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCA          >  SRR4302541.737222/1‑94 (MQ=60)

                                                                                     TAATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCAT         >  SRR4302541.6543812/1‑94 (MQ=60)

                                                                                      AATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATT        <  SRR4302541.8570265/94‑1 (MQ=60)

                                                                                      AATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATT        >  SRR4302541.6806669/1‑94 (MQ=60)

                                                                                      AATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATT        <  SRR4302541.4136464/94‑1 (MQ=60)

                                                                                      AATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATT        <  SRR4302541.8570266/94‑1 (MQ=60)

                                                                                      AATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATT        <  SRR4302541.7954443/94‑1 (MQ=60)

                                                                                      AATAGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATT        >  SRR4302541.2463154/1‑94 (MQ=60)

                                                                                         AGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATG     >  SRR4302541.8550168/1‑94 (MQ=60)

                                                                                         AGTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATG     >  SRR4302541.2579982/1‑94 (MQ=60)

                                                                                          GTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGA    <  SRR4302541.1117269/94‑1 (MQ=60)

                                                                                          GTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGA    <  SRR4302541.1117270/94‑1 (MQ=60)

                                                                                          GTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGA    >  SRR4302541.1797074/1‑94 (MQ=60)

                                                                                          GTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGA    >  SRR4302541.6631434/1‑94 (MQ=60)

                                                                                          GTAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGCATGGTTATTTAATGAACACTAGAAATCATTATGA    >  SRR4302541.1797073/1‑94 (MQ=60)

                                                                                           TAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGAC   >  SRR4302541.7304314/1‑94 (MQ=60)

                                                                                           TAGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGAC   <  SRR4302541.2084891/94‑1 (MQ=60)

                                                                                           TAGTGGGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGAC   <  SRR4302541.7443251/94‑1 (MQ=60)

                                                                                            AGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  <  SRR4302541.2512881/94‑1 (MQ=60)

                                                                                            AGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  <  SRR4302541.2512880/94‑1 (MQ=60)

                                                                                            AGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  <  SRR4302541.8128285/94‑1 (MQ=60)

                                                                                            AGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  <  SRR4302541.8128284/94‑1 (MQ=60)

                                                                                            AGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  >  SRR4302541.1689251/1‑94 (MQ=60)

                                                                                            AGTGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  >  SRR4302541.1446629/1‑94 (MQ=60)

TAGATACCGACACGTCGGATAGGATTAAAGCGGTGAAGAATTTTCTTGTTGTTCTTTCAGATAGCATTTGCTCATTATTTATTGTTAATAGTAATGTGGCATCAATCTCCTTGGGGAATGAATCCTTTTCAACAGATGAAGATCTTGAGTATGGTTATTTAATGAACACTGGCAATCATTATGACG  >  NC_000913/1064235‑1064420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`