Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,090,676 A→G R279R (CGT→CGC)  ycdS ← putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,090,6760AG100.0% 706.6 / NA 202R279R (CGT→CGC) ycdSputative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (125/77);  total (125/77)

Only 100 of 206 total aligned reads displayed.

TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATACGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATA  >  NC_000913/1090587‑1090765
                                                                                         |                                                                                         
tGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATgcgc                                                                                        <  1:6377247/93‑1 (MQ=255)
 gCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCt                                                                                       >  1:4594130/1‑93 (MQ=255)
  tcccGTCTTTTATAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTg                                                                                      <  2:3910346/92‑1 (MQ=255)
  ccccGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTg                                                                                      <  2:5791676/93‑1 (MQ=255)
  ccccGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTg                                                                                      <  2:5089753/93‑1 (MQ=255)
   cccGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTgg                                                                                     <  2:6150578/93‑1 (MQ=255)
    ccGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGt                                                                                    >  2:3962928/1‑93 (MQ=255)
    ccGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGt                                                                                    >  2:2741141/1‑93 (MQ=255)
    ccGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGt                                                                                    >  2:181620/1‑93 (MQ=255)
     cGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTa                                                                                   >  1:4514674/1‑93 (MQ=255)
      gTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTAc                                                                                  >  2:3843883/1‑93 (MQ=255)
      gTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTAc                                                                                  <  2:330347/93‑1 (MQ=255)
         ttttttAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTgg                                                                               >  2:4625481/1‑93 (MQ=255)
         ttttttAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTgg                                                                               >  2:5462761/1‑93 (MQ=255)
          tttttAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTggg                                                                              >  1:4562549/1‑93 (MQ=255)
             ttAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAg                                                                           >  2:5838818/1‑93 (MQ=255)
              tAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGt                                                                          <  2:3917524/93‑1 (MQ=255)
               aaTCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTg                                                                         <  2:740251/93‑1 (MQ=255)
                aTCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGc                                                                        >  2:366273/1‑93 (MQ=255)
                aTCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGc                                                                        >  1:194642/1‑93 (MQ=255)
                  cGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCgg                                                                      >  1:2631505/1‑93 (MQ=255)
                   gCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGt                                                                     <  2:3088068/93‑1 (MQ=255)
                    cTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTc                                                                    <  2:2469818/93‑1 (MQ=255)
                     tGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATGACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCt                                                                   >  2:3446261/1‑93 (MQ=255)
                     tGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCt                                                                   <  2:2700750/93‑1 (MQ=255)
                     tGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCt                                                                   <  2:599003/93‑1 (MQ=255)
                     tGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCt                                                                   >  1:3560515/1‑93 (MQ=255)
                      gATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTg                                                                  <  1:4915050/93‑1 (MQ=255)
                       aTAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTgg                                                                 >  1:6205277/1‑93 (MQ=255)
                       aTAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTgg                                                                 >  1:2318748/1‑93 (MQ=255)
                       aTAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTgg                                                                 >  1:2048167/1‑93 (MQ=255)
                        tAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTggg                                                                <  1:846947/93‑1 (MQ=255)
                         aGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGt                                                               <  1:1609129/93‑1 (MQ=255)
                                aaTAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTg                                                        >  1:3040413/1‑93 (MQ=255)
                                 aTAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGc                                                       >  2:2920027/1‑93 (MQ=255)
                                 aTAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGc                                                       >  1:508620/1‑93 (MQ=255)
                                  tgaCGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATCATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGcc                                                      <  1:6158547/91‑1 (MQ=255)
                                  tAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGcc                                                      <  1:2959271/93‑1 (MQ=255)
                                  tAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGcc                                                      <  2:4418994/93‑1 (MQ=255)
                                   aaCGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCca                                                     >  1:5329091/1‑93 (MQ=255)
                                      gTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAg                                                  >  1:768381/1‑93 (MQ=255)
                                        cTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGaa                                                <  2:5870841/93‑1 (MQ=255)
                                         tttATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAAt                                               >  2:4127726/1‑93 (MQ=255)
                                         tttATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAAt                                               <  2:1899942/93‑1 (MQ=255)
                                         tttATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAAt                                               >  2:171979/1‑93 (MQ=255)
                                          ttATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAAtt                                              <  2:2777395/93‑1 (MQ=255)
                                          ttATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAAtt                                              <  1:976350/93‑1 (MQ=255)
                                          ttATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAAtt                                              >  1:1075127/1‑93 (MQ=255)
                                            ataACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTc                                            <  2:4931986/93‑1 (MQ=255)
                                             taACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCt                                           >  1:2809225/1‑93 (MQ=255)
                                              aaCGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTa                                          >  1:3292911/1‑93 (MQ=255)
                                              aaCGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTa                                          >  1:4140215/1‑93 (MQ=255)
                                               aCGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTaa                                         >  1:2114827/1‑93 (MQ=255)
                                               aCGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTaa                                         >  1:5477327/1‑93 (MQ=255)
                                                cGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAAt                                        <  2:1090063/93‑1 (MQ=255)
                                                 gATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATg                                       >  1:5724495/1‑93 (MQ=255)
                                                  aTCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGc                                      >  1:1568672/1‑93 (MQ=255)
                                                  aTCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGc                                      >  2:5523346/1‑93 (MQ=255)
                                                     gcgAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGc                                   >  2:5282140/1‑93 (MQ=255)
                                                     gcgAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGc                                   >  1:2593777/1‑93 (MQ=255)
                                                      cgAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCg                                  >  1:1446358/1‑93 (MQ=255)
                                                       gAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGt                                 >  1:5421331/1‑93 (MQ=255)
                                                       gAGTGAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGt                                 <  1:5956439/93‑1 (MQ=255)
                                                        aGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTa                                >  1:2488116/1‑93 (MQ=255)
                                                          ttAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTAtt                              >  2:2029102/1‑93 (MQ=255)
                                                           taataaCGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTg                             <  2:474769/93‑1 (MQ=255)
                                                            aataaCGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTgg                            <  1:2887159/93‑1 (MQ=255)
                                                             ataaCGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTggg                           >  2:2442046/1‑93 (MQ=255)
                                                                aCGCGCCAAGATGATCACCCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGa                        <  2:71321/93‑1 (MQ=255)
                                                                aCGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGa                        >  2:4056691/1‑93 (MQ=255)
                                                                 cgcgCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAg                       <  2:2343398/93‑1 (MQ=255)
                                                                 cgcgCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAg                       >  2:5368948/1‑93 (MQ=255)
                                                                 cgcgCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAg                       <  2:3995261/93‑1 (MQ=255)
                                                                 cgcgCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAg                       >  2:5706305/1‑93 (MQ=255)
                                                                   cgcCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAggg                     <  2:4341717/93‑1 (MQ=255)
                                                                      cAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGgcgc                  >  2:4780492/1‑93 (MQ=255)
                                                                      cAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGgcgc                  <  2:603599/93‑1 (MQ=255)
                                                                      cAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGgcgc                  >  1:2511161/1‑93 (MQ=255)
                                                                       aaGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGcgcg                 >  2:1583037/1‑93 (MQ=255)
                                                                        aGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGa                >  1:1832679/1‑93 (MQ=255)
                                                                        aGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGa                >  2:5216927/1‑93 (MQ=255)
                                                                         gatgatCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGAt               <  2:3759918/93‑1 (MQ=255)
                                                                         gatgatCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGAt               <  1:2193152/93‑1 (MQ=255)
                                                                           tgatCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTCTCGTGCCCAAGCATTTCTCATGCAGCGTACTGGGTGACGGCGCGATCg             >  1:2797465/1‑93 (MQ=255)
                                                                           tgatCAACCTGAATGCGCGGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCTAGGGCGCGATCg             <  2:447881/93‑1 (MQ=255)
                                                                             atCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGc           <  1:3251402/93‑1 (MQ=255)
                                                                             atCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGc           <  1:3768167/93‑1 (MQ=255)
                                                                               cAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCaa         >  2:2502763/1‑93 (MQ=255)
                                                                                aaCCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAAt        >  1:3548347/1‑93 (MQ=255)
                                                                                aaCCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAAt        <  2:5141995/93‑1 (MQ=255)
                                                                                aaCCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAAt        >  1:5608051/1‑93 (MQ=255)
                                                                                 aCCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATg       >  1:267940/1‑93 (MQ=255)
                                                                                   cTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGc     >  1:4686/1‑93 (MQ=255)
                                                                                   cTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGAAGCGTATTGGGCGAGGGCGCGATCGGCAATGGc     <  2:6302206/93‑1 (MQ=255)
                                                                                    tGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCa    >  1:5259447/1‑93 (MQ=255)
                                                                                     gAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCAt   <  1:1910659/93‑1 (MQ=255)
                                                                                     gAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCAt   <  2:187187/93‑1 (MQ=255)
                                                                                     gAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCAt   >  1:124003/1‑93 (MQ=255)
                                                                                      aaTGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATa  <  1:3527562/93‑1 (MQ=255)
                                                                                      aaTGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATa  >  1:3167395/1‑93 (MQ=255)
                                                                                         |                                                                                         
TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATACGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATA  >  NC_000913/1090587‑1090765

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATACGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAACG  >  NC_000913/1090587‑1090768
                                                                                         |                                                                                            
TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCT                                                                                          >  SRR4302534.2693689/1‑94 (MQ=60)
TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCT                                                                                          <  SRR4302534.6549495/94‑1 (MQ=60)
TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCT                                                                                          >  SRR4302534.4718812/1‑94 (MQ=60)
 GCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTG                                                                                         >  SRR4302534.5482895/1‑94 (MQ=60)
    CCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTA                                                                                      >  SRR4302534.4636968/1‑94 (MQ=60)
       TCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTG                                                                                   >  SRR4302534.5610372/1‑94 (MQ=60)
         TTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGG                                                                                 >  SRR4302534.4686250/1‑94 (MQ=60)
          TTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGC                                                                                >  SRR4302534.3823134/1‑94 (MQ=60)
           TTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCA                                                                               >  SRR4302534.1569200/1‑94 (MQ=60)
            TTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAG                                                                              >  SRR4302534.3304097/1‑94 (MQ=60)
              TAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTG                                                                            >  SRR4302534.2703107/1‑94 (MQ=60)
              TAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTG                                                                            >  SRR4302534.4112/1‑94 (MQ=60)
               AATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGC                                                                           <  SRR4302534.665883/94‑1 (MQ=60)
               AATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGC                                                                           >  SRR4302534.199737/1‑94 (MQ=60)
                 TCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGG                                                                         >  SRR4302534.2701130/1‑94 (MQ=60)
                 TCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGG                                                                         <  SRR4302534.2876161/94‑1 (MQ=60)
                   GCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTC                                                                       >  SRR4302534.1172344/1‑94 (MQ=60)
                    CTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCT                                                                      >  SRR4302534.2356689/1‑94 (MQ=60)
                    CTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCT                                                                      >  SRR4302534.3656307/1‑94 (MQ=60)
                    CTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAAAGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCG                                                                      >  SRR4302534.265626/1‑94 (MQ=60)
                     TTATAGTGAGAAATAACGTCTTTAAAACGATAGTGAGTTAATAACGAGCAAAGATGATCAACCTGTATGCGCTGTTATTGGGCTGAGCGGTCTG                                                                     >  SRR4302534.1929082/1‑94 (MQ=30)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    >  SRR4302534.2101694/1‑94 (MQ=60)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    <  SRR4302534.278168/94‑1 (MQ=60)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    >  SRR4302534.196927/1‑94 (MQ=60)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    >  SRR4302534.2380286/1‑94 (MQ=60)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    <  SRR4302534.5048268/94‑1 (MQ=60)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    >  SRR4302534.6373998/1‑94 (MQ=60)
                      GATAGTGAGAAATAACGTCTTTATAACGATCGCGAGGTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGG                                                                    >  SRR4302534.6019218/1‑94 (MQ=60)
                        TAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGT                                                                  <  SRR4302534.868299/94‑1 (MQ=60)
                         AGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTT                                                                 <  SRR4302534.1651137/94‑1 (MQ=60)
                         AGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTT                                                                 <  SRR4302534.3137180/94‑1 (MQ=60)
                          GTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTA                                                                <  SRR4302534.5752985/94‑1 (MQ=60)
                          GTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTA                                                                <  SRR4302534.2932940/94‑1 (MQ=60)
                          GTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTA                                                                >  SRR4302534.799051/1‑94 (MQ=60)
                             AGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCG                                                             >  SRR4302534.5824050/1‑94 (MQ=60)
                               AAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTG                                                           >  SRR4302534.3120156/1‑94 (MQ=60)
                                AATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGC                                                          >  SRR4302534.521279/1‑94 (MQ=60)
                                AATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGC                                                          >  SRR4302534.223068/1‑94 (MQ=60)
                                 ATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCC                                                         >  SRR4302534.1635339/1‑94 (MQ=60)
                                  TGACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATCATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCA                                                        <  SRR4302534.6326051/94‑1 (MQ=60)
                                  TAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCA                                                        >  SRR4302534.5472820/1‑94 (MQ=60)
                                  TAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCA                                                        <  SRR4302534.3036814/94‑1 (MQ=60)
                                   AACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCAC                                                       >  SRR4302534.4575446/1‑94 (MQ=60)
                                     CGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAG                                                     >  SRR4302534.787483/1‑94 (MQ=60)
                                      GTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGA                                                    >  SRR4302534.2988519/1‑94 (MQ=60)
                                         TTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATT                                                 >  SRR4302534.1103048/1‑94 (MQ=60)
                                          TTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTT                                                >  SRR4302534.3363479/1‑94 (MQ=60)
                                          TTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTT                                                <  SRR4302534.1001267/94‑1 (MQ=60)
                                            ATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCT                                              >  SRR4302534.2883094/1‑94 (MQ=60)
                                             TAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTA                                             >  SRR4302534.4251946/1‑94 (MQ=60)
                                             TAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTA                                             >  SRR4302534.3380732/1‑94 (MQ=60)
                                              AACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAA                                            >  SRR4302534.2170461/1‑94 (MQ=60)
                                              AACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAA                                            >  SRR4302534.5625013/1‑94 (MQ=60)
                                                CGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATG                                          >  SRR4302534.5879570/1‑94 (MQ=60)
                                                CGATCGCGAGCTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTGCTGGGCAGaggggggttggttttgtggtcccactgtttttttat                                          >  SRR4302534.4773867/1‑58 (MQ=60)
                                                 GATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGC                                         >  SRR4302534.1609755/1‑94 (MQ=60)
                                                 GATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGC                                         >  SRR4302534.5018649/1‑94 (MQ=60)
                                                  ATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCA                                        <  SRR4302534.2525350/94‑1 (MQ=60)
                                                    CGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGC                                      >  SRR4302534.2662431/1‑94 (MQ=60)
                                                    CGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGATATCGTGCCACAGAATTTCTAATGCAGC                                      >  SRR4302534.1481566/1‑94 (MQ=60)
                                                     GCGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCG                                     >  SRR4302534.1484422/1‑94 (MQ=60)
                                                      CGAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGT                                    >  SRR4302534.5567221/1‑94 (MQ=60)
                                                       GAGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTA                                   >  SRR4302534.2554215/1‑94 (MQ=60)
                                                       GAGTGAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTA                                   <  SRR4302534.6118176/94‑1 (MQ=60)
                                                        AGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTAT                                  >  SRR4302534.200170/1‑94 (MQ=60)
                                                        AGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTAT                                  >  SRR4302534.1696785/1‑94 (MQ=60)
                                                        AGTTAATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTAT                                  >  SRR4302534.6183020/1‑94 (MQ=60)
                                                            AATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGG                              >  SRR4302534.5064047/1‑94 (MQ=60)
                                                            AATAACGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGG                              <  SRR4302534.2962920/94‑1 (MQ=60)
                                                                 CGCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGG                         <  SRR4302534.3042138/94‑1 (MQ=60)
                                                                  GCGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGG                        <  SRR4302534.6333519/94‑1 (MQ=60)
                                                                   CGCCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGC                       >  SRR4302534.1460545/1‑94 (MQ=60)
                                                                     CCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGC                     >  SRR4302534.2577833/1‑94 (MQ=60)
                                                                     CCAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGC                     >  SRR4302534.4871029/1‑94 (MQ=60)
                                                                      CAAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCG                    >  SRR4302534.6534872/1‑94 (MQ=60)
                                                                       AAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGA                   >  SRR4302534.1880340/1‑94 (MQ=60)
                                                                       AAGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGA                   <  SRR4302534.5408278/94‑1 (MQ=60)
                                                                        AGATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGAT                  >  SRR4302534.2812607/1‑94 (MQ=60)
                                                                         GATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATC                 <  SRR4302534.2251132/94‑1 (MQ=60)
                                                                          ATGATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTCTCGTGCCCAAGCATTTCTCATGCAGCGTACTGGGTGACGGCGCGATCG                >  SRR4302534.2871039/1‑94 (MQ=53)
                                                                             ATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCA             <  SRR4302534.3869332/94‑1 (MQ=60)
                                                                             ATCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCA             <  SRR4302534.3337995/94‑1 (MQ=60)
                                                                              TCAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAA            >  SRR4302534.932430/1‑94 (MQ=60)
                                                                               CAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAAT           >  SRR4302534.5759751/1‑94 (MQ=60)
                                                                               CAACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAAT           >  SRR4302534.3643768/1‑94 (MQ=60)
                                                                                AACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATG          <  SRR4302534.5292824/94‑1 (MQ=60)
                                                                                AACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATG          >  SRR4302534.274882/1‑94 (MQ=60)
                                                                                AACCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGATATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATAGGCAATG          >  SRR4302534.3640490/1‑94 (MQ=60)
                                                                                  CCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCNTANTGGGCGAGGGCGCGATCNGCAATGGC        >  SRR4302534.4697251/1‑94 (MQ=60)
                                                                                  CCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGC        >  SRR4302534.4817/1‑94 (MQ=60)
                                                                                  CCTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGC        >  SRR4302534.4787972/1‑94 (MQ=60)
                                                                                   CTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCA       >  SRR4302534.5401561/1‑94 (MQ=60)
                                                                                   CTGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCA       >  SRR4302534.3423501/1‑94 (MQ=60)
                                                                                    TGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCAT      >  SRR4302534.127278/1‑94 (MQ=60)
                                                                                    TGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCAT      <  SRR4302534.4658238/94‑1 (MQ=60)
                                                                                    TGAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCAT      <  SRR4302534.3645096/94‑1 (MQ=60)
                                                                                     GAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATA     >  SRR4302534.3250933/1‑94 (MQ=60)
                                                                                     GAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATA     >  SRR4302534.2561406/1‑94 (MQ=60)
                                                                                     GAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATA     <  SRR4302534.1960533/94‑1 (MQ=60)
                                                                                     GAATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATA     >  SRR4302534.2114303/1‑94 (MQ=60)
                                                                                      AATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAA    <  SRR4302534.3622450/94‑1 (MQ=60)
                                                                                      AATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAA    >  SRR4302534.2314634/1‑94 (MQ=60)
                                                                                       ATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAAC   <  SRR4302534.3657278/94‑1 (MQ=60)
                                                                                       ATGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAAC   <  SRR4302534.4533605/94‑1 (MQ=60)
                                                                                        TGCGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAACG  >  SRR4302534.1280399/1‑94 (MQ=60)
                                                                                         |                                                                                            
TGCCCCGTCTTTTTTAATCGCTGATAGTGAGAAATAACGTCTTTATAACGATCGCGAGTTAATAACGCGCCAAGATGATCAACCTGAATACGCTGGTACTGGGCAGTGCGGTCTGGGTTATCGTGCCACAGAATTTCTAATGCAGCGTATTGGGCGAGGGCGCGATCGGCAATGGCATAACG  >  NC_000913/1090587‑1090768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑