Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,348,410 A→G R218R (CGT→CGC)  fabI ← enoyl‑[acyl‑carrier‑protein] reductase (NADH)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,348,4100AG100.0% 919.3 / NA 263R218R (CGT→CGC) fabIenoyl‑[acyl‑carrier‑protein] reductase (NADH)
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (137/126);  total (137/126)

Only 100 of 271 total aligned reads displayed.

GTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTACGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGC  >  NC_000913/1348320‑1348499
                                                                                          |                                                                                         
gTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCg                                                                                         >  2:5074550/1‑93 (MQ=255)
gTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCg                                                                                         >  1:400308/1‑93 (MQ=255)
gTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCg                                                                                         <  1:503706/93‑1 (MQ=255)
gTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCg                                                                                         <  2:3015797/93‑1 (MQ=255)
 tCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCgg                                                                                        >  2:1426262/1‑93 (MQ=255)
 tCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCgg                                                                                        <  1:4825995/93‑1 (MQ=255)
    aCGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGa                                                                                     <  2:4949088/93‑1 (MQ=255)
    aCGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGa                                                                                     >  1:590364/1‑93 (MQ=255)
    aCGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGa                                                                                     <  2:5552619/93‑1 (MQ=255)
      gTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAAt                                                                                   >  2:711967/1‑93 (MQ=255)
       tGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATc                                                                                  <  1:2482992/93‑1 (MQ=255)
       tGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATc                                                                                  >  2:2634926/1‑93 (MQ=255)
       tGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATc                                                                                  >  1:6024248/1‑93 (MQ=255)
         gACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCgg                                                                                <  2:5296797/93‑1 (MQ=255)
         gACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCgg                                                                                >  2:1061293/1‑93 (MQ=255)
           ccACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCgggg                                                                              <  1:2890923/93‑1 (MQ=255)
            cACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGt                                                                             <  1:4533188/93‑1 (MQ=255)
             aCTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTa                                                                            >  1:4339830/1‑93 (MQ=255)
             aCTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTa                                                                            >  1:1655047/1‑93 (MQ=255)
              cTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTaa                                                                           <  1:1912941/93‑1 (MQ=255)
               ttCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAAc                                                                          <  1:3486479/93‑1 (MQ=255)
                tCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACg                                                                         <  2:4921645/93‑1 (MQ=255)
                  aCCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTAGCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGc                                                                       >  2:3876301/1‑93 (MQ=255)
                  aCCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGc                                                                       >  1:4931554/1‑93 (MQ=255)
                   ccGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCt                                                                      <  2:1183623/93‑1 (MQ=255)
                    cGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCtt                                                                     <  2:3354656/93‑1 (MQ=255)
                    cGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCtt                                                                     <  2:2002819/93‑1 (MQ=255)
                    cGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCtt                                                                     <  1:2980309/93‑1 (MQ=255)
                    cGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCtt                                                                     >  1:642966/1‑93 (MQ=255)
                      gagaTACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCg                                                                   >  1:3794105/1‑93 (MQ=255)
                       agaTACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGc                                                                  <  2:5323639/93‑1 (MQ=255)
                       agaTACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGc                                                                  <  2:6420476/93‑1 (MQ=255)
                       agaTACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGc                                                                  >  2:5896683/1‑93 (MQ=255)
                          tACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAAt                                                               <  2:5417483/93‑1 (MQ=255)
                           aCCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATg                                                              >  1:2350160/1‑93 (MQ=255)
                            ccGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGa                                                             <  1:1583455/93‑1 (MQ=255)
                            ccGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGa                                                             <  2:4451810/93‑1 (MQ=255)
                            ccGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACAGCTTCGCAATGa                                                             >  1:4049286/1‑93 (MQ=255)
                             cGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAg                                                            >  2:3176086/1‑93 (MQ=255)
                             cGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAg                                                            <  1:663056/93‑1 (MQ=255)
                              ggCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGc                                                           >  1:5534249/1‑93 (MQ=255)
                              ggCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGc                                                           >  1:4558392/1‑93 (MQ=255)
                              ggCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGc                                                           <  1:716140/93‑1 (MQ=255)
                                cAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCa                                                         >  2:6334443/1‑93 (MQ=255)
                                 agagagATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAg                                                        >  2:2583099/1‑93 (MQ=255)
                                  gagagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGc                                                       <  2:4758158/93‑1 (MQ=255)
                                  gagagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGc                                                       >  2:1008887/1‑93 (MQ=255)
                                   agagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCa                                                      <  1:113100/93‑1 (MQ=255)
                                    gagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAt                                                     <  1:6220043/93‑1 (MQ=255)
                                    gagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAt                                                     >  2:3543096/1‑93 (MQ=255)
                                    gagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAt                                                     <  1:3872229/93‑1 (MQ=255)
                                    gagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAt                                                     <  1:3921049/93‑1 (MQ=255)
                                    gagaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAt                                                     >  2:882457/1‑93 (MQ=255)
                                     agaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAtt                                                    <  1:301090/93‑1 (MQ=255)
                                      gaTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAttt                                                   <  2:5148256/93‑1 (MQ=255)
                                       aTCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAtttt                                                  <  2:1720877/93‑1 (MQ=255)
                                         cGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGc                                                <  1:5277273/93‑1 (MQ=255)
                                         cGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGc                                                <  2:2671812/93‑1 (MQ=255)
                                         cGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGc                                                <  2:2812213/93‑1 (MQ=255)
                                            aGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGa                                             <  2:4202664/93‑1 (MQ=255)
                                             gCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGaa                                            <  2:1853796/93‑1 (MQ=255)
                                              cacaGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAg                                           <  1:1791655/93‑1 (MQ=255)
                                               acaGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGt                                          <  1:4602101/93‑1 (MQ=255)
                                                 aGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGCATCGGGGTAACGGCTTCGCAATCAGCCAGCATTTTGCTGAAGTCt                                        >  2:754059/1‑93 (MQ=255)
                                                 aGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCt                                        <  1:4784301/93‑1 (MQ=255)
                                                 aGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCt                                        >  2:2228926/1‑93 (MQ=255)
                                                  ggAATGCCGCAGAGTTACCCTCATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCtt                                       >  1:3361876/1‑93 (MQ=255)
                                                  ggAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCtt                                       <  2:6447546/93‑1 (MQ=255)
                                                    aaTGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTg                                     >  1:1050729/1‑93 (MQ=255)
                                                     aTGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGa                                    <  2:3804756/93‑1 (MQ=255)
                                                      tGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGAt                                   <  1:1289951/93‑1 (MQ=255)
                                                       gCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATa                                  >  1:886996/1‑93 (MQ=255)
                                                       gCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATa                                  <  2:2906892/93‑1 (MQ=255)
                                                           cAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTTCGGAAGTCTTTCATACCgg                              >  2:6155357/1‑93 (MQ=255)
                                                           cAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCgg                              <  2:5803572/93‑1 (MQ=255)
                                                            agagTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGa                             <  2:5561612/93‑1 (MQ=255)
                                                                   cccACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGgccgcc                      <  1:5287690/93‑1 (MQ=255)
                                                                     cacaTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCag                    <  2:3422940/93‑1 (MQ=255)
                                                                      acaTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCaga                   <  1:2256450/93‑1 (MQ=255)
                                                                       caTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCagag                  <  1:1389886/93‑1 (MQ=255)
                                                                       caTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCagag                  >  1:3460593/1‑93 (MQ=255)
                                                                        aTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGCAGTCTTTGATACCGGCGGACGCCagaga                 >  1:2801184/1‑92 (MQ=255)
                                                                        aTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGt                 <  2:6175671/93‑1 (MQ=255)
                                                                        aTCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGt                 <  1:5814903/93‑1 (MQ=255)
                                                                          cTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTAc               <  2:4278706/93‑1 (MQ=255)
                                                                          cTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTAc               <  2:2263233/93‑1 (MQ=255)
                                                                           ttCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACg              >  1:4223963/1‑93 (MQ=255)
                                                                             cAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGa            >  2:5923307/1‑93 (MQ=255)
                                                                             cAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGa            >  2:3131322/1‑93 (MQ=255)
                                                                              aaTAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGAt           <  1:2541661/93‑1 (MQ=255)
                                                                              aaTAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGAt           >  2:183950/1‑93 (MQ=255)
                                                                              aaTAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGAt           <  2:2413809/93‑1 (MQ=255)
                                                                               aTAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATc          <  2:964709/93‑1 (MQ=255)
                                                                                tAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCg         >  1:2670150/1‑93 (MQ=255)
                                                                                 aGTAACGGTGCGGCGAATCGGGGGAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCgg        >  2:1665792/1‑93 (MQ=255)
                                                                                  gTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGa       >  2:1521082/1‑93 (MQ=255)
                                                                                     aCGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACca    <  2:3246367/93‑1 (MQ=255)
                                                                                      cGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACcag   <  1:6307900/93‑1 (MQ=255)
                                                                                       ggTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACcagc  >  2:1273271/1‑93 (MQ=255)
                                                                                       ggTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACcagc  <  1:6101026/93‑1 (MQ=255)
                                                                                          |                                                                                         
GTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTACGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGC  >  NC_000913/1348320‑1348499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTACGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGCAGA  >  NC_000913/1348317‑1348502
                                                                                             |                                                                                            
GCCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTG                                                                                              >  SRR4302534.307641/1‑94 (MQ=60)
GCCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTG                                                                                              >  SRR4302534.3843911/1‑94 (MQ=60)
GCCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTG                                                                                              >  SRR4302534.3213592/1‑94 (MQ=60)
 CCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGC                                                                                             <  SRR4302534.6394223/94‑1 (MQ=60)
 CCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGC                                                                                             >  SRR4302534.3642583/1‑94 (MQ=60)
  CGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCG                                                                                            <  SRR4302534.738532/94‑1 (MQ=60)
  CGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCG                                                                                            <  SRR4302534.6507722/94‑1 (MQ=60)
  CGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCG                                                                                            <  SRR4302534.4377601/94‑1 (MQ=60)
  CGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCG                                                                                            >  SRR4302534.410543/1‑94 (MQ=60)
   GTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGG                                                                                           <  SRR4302534.516240/94‑1 (MQ=60)
   GTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGG                                                                                           >  SRR4302534.3066459/1‑94 (MQ=60)
    TCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGC                                                                                          <  SRR4302534.4956955/94‑1 (MQ=60)
    TCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGC                                                                                          >  SRR4302534.4939733/1‑94 (MQ=60)
     CAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCG                                                                                         <  SRR4302534.4954798/94‑1 (MQ=60)
      AACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGA                                                                                        >  SRR4302534.5659715/1‑94 (MQ=60)
      AACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGA                                                                                        >  SRR4302534.6564959/1‑94 (MQ=60)
      AACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGA                                                                                        >  SRR4302534.604774/1‑94 (MQ=60)
       ACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAA                                                                                       <  SRR4302534.6382002/94‑1 (MQ=60)
         GTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATC                                                                                     >  SRR4302534.6187966/1‑94 (MQ=60)
          TGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCG                                                                                    <  SRR4302534.2548929/94‑1 (MQ=60)
             ACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGG                                                                                 >  SRR4302534.3940518/1‑94 (MQ=60)
              CCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGT                                                                                <  SRR4302534.66343/94‑1 (MQ=60)
              CCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGT                                                                                <  SRR4302534.2966784/94‑1 (MQ=60)
               CACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTA                                                                               >  SRR4302534.1698180/1‑94 (MQ=60)
               CACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTA                                                                               <  SRR4302534.4656035/94‑1 (MQ=60)
               CACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTA                                                                               >  SRR4302534.4457101/1‑94 (MQ=60)
                 CTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAAC                                                                             <  SRR4302534.1962873/94‑1 (MQ=60)
                  TTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACG                                                                            <  SRR4302534.619899/94‑1 (MQ=60)
                  TTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACG                                                                            <  SRR4302534.3580189/94‑1 (MQ=60)
                    CACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGC                                                                          >  SRR4302534.5065215/1‑94 (MQ=60)
                    CACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGC                                                                          >  SRR4302534.5263444/1‑94 (MQ=60)
                     ACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCT                                                                         <  SRR4302534.5168809/94‑1 (MQ=60)
                      CCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTT                                                                        >  SRR4302534.658569/1‑94 (MQ=60)
                       CGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTC                                                                       <  SRR4302534.3058297/94‑1 (MQ=60)
                       CGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTC                                                                       <  SRR4302534.4659106/94‑1 (MQ=60)
                        GGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCG                                                                      <  SRR4302534.1673119/94‑1 (MQ=60)
                        GGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCG                                                                      <  SRR4302534.6294556/94‑1 (MQ=60)
                        GGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCG                                                                      >  SRR4302534.3895968/1‑94 (MQ=60)
                          AGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGCAACGGCTTCGCA                                                                    >  SRR4302534.1244645/1‑94 (MQ=60)
                            ATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAAT                                                                  >  SRR4302534.2303319/1‑94 (MQ=60)
                            ATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAAT                                                                  >  SRR4302534.3083454/1‑94 (MQ=60)
                             TACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATG                                                                 >  SRR4302534.4888000/1‑94 (MQ=60)
                             TACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATG                                                                 >  SRR4302534.2412533/1‑94 (MQ=60)
                              ACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACAGCTTCGCAATGA                                                                >  SRR4302534.4157881/1‑94 (MQ=60)
                               CCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAG                                                               <  SRR4302534.1624874/94‑1 (MQ=60)
                                CGGCAGAGAGATCGGAGCACAGGAATGGCGCAGAGCTACCCACAACTTCAATAGCAACGCTGCGGCGAATCCGGGTAACTGCTTCCCAATGAGC                                                              >  SRR4302534.3240203/1‑94 (MQ=53)
                                CGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGC                                                              <  SRR4302534.679186/94‑1 (MQ=60)
                                CGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGC                                                              <  SRR4302534.3578648/94‑1 (MQ=60)
                                CGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGC                                                              >  SRR4302534.4681979/1‑94 (MQ=60)
                                CGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGC                                                              >  SRR4302534.5683632/1‑94 (MQ=60)
                                 GGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCC                                                             >  SRR4302534.1339447/1‑94 (MQ=60)
                                 GGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCC                                                             <  SRR4302534.733781/94‑1 (MQ=60)
                                  GCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCA                                                            <  SRR4302534.463555/94‑1 (MQ=60)
                                  GCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCA                                                            <  SRR4302534.287720/94‑1 (MQ=60)
                                   CAGAGAGATCGGAGCCCAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCCATGAGCCAG                                                           <  SRR4302534.4894458/94‑1 (MQ=60)
                                    AGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGC                                                          <  SRR4302534.5527152/94‑1 (MQ=60)
                                     GAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCA                                                         <  SRR4302534.3050340/94‑1 (MQ=60)
                                      AGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAT                                                        >  SRR4302534.6133055/1‑94 (MQ=60)
                                      AGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCAT                                                        <  SRR4302534.116110/94‑1 (MQ=60)
                                       GAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATT                                                       <  SRR4302534.6388992/94‑1 (MQ=60)
                                       GAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATT                                                       <  SRR4302534.4026118/94‑1 (MQ=60)
                                       GAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATT                                                       >  SRR4302534.399969/1‑94 (MQ=60)
                                       GAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATT                                                       <  SRR4302534.3976206/94‑1 (MQ=60)
                                        AGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTT                                                      <  SRR4302534.308862/94‑1 (MQ=60)
                                         GATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTT                                                     >  SRR4302534.114659/1‑94 (MQ=60)
                                         GATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTT                                                     <  SRR4302534.704557/94‑1 (MQ=60)
                                         GATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTT                                                     >  SRR4302534.4685442/1‑94 (MQ=60)
                                         GATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTT                                                     <  SRR4302534.2555473/94‑1 (MQ=60)
                                           TCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGC                                                   <  SRR4302534.351702/94‑1 (MQ=60)
                                            CGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCG                                                  <  SRR4302534.5419764/94‑1 (MQ=60)
                                            CGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCG                                                  >  SRR4302534.2688488/1‑94 (MQ=60)
                                             GGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGG                                                 >  SRR4302534.3711770/1‑94 (MQ=60)
                                               AGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAA                                               >  SRR4302534.402143/1‑94 (MQ=60)
                                               AGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAA                                               >  SRR4302534.5997009/1‑94 (MQ=60)
                                               AGCACAGGAATGCCGCAGAGTTACACACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCCGCAATTTGCGGAA                                               >  SRR4302534.196003/1‑94 (MQ=60)
                                                 CACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGT                                             <  SRR4302534.1838190/94‑1 (MQ=60)
                                                  ACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTC                                            >  SRR4302534.4964872/1‑94 (MQ=60)
                                                  ACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTC                                            <  SRR4302534.4726997/94‑1 (MQ=60)
                                                   CAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCT                                           <  SRR4302534.473037/94‑1 (MQ=60)
                                                   CAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCT                                           <  SRR4302534.4086480/94‑1 (MQ=60)
                                                   CAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCT                                           >  SRR4302534.5927059/1‑94 (MQ=60)
                                                   CAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCT                                           <  SRR4302534.2171009/94‑1 (MQ=60)
                                                    AGGAATGCCGCAGAGTTACCCTCATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTT                                          >  SRR4302534.3451922/1‑94 (MQ=60)
                                                    AGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTT                                          <  SRR4302534.4914228/94‑1 (MQ=60)
                                                    AGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTT                                          >  SRR4302534.1572022/1‑94 (MQ=60)
                                                     GGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTT                                         >  SRR4302534.3834133/1‑94 (MQ=60)
                                                     GGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTT                                         <  SRR4302534.4121885/94‑1 (MQ=60)
                                                     GGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTT                                         <  SRR4302534.1805208/94‑1 (MQ=60)
                                                      GAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTG                                        <  SRR4302534.1687523/94‑1 (MQ=60)
                                                      GAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTG                                        >  SRR4302534.1077934/1‑94 (MQ=60)
                                                       AATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGA                                       >  SRR4302534.3185304/1‑94 (MQ=60)
                                                        ATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGAT                                      <  SRR4302534.4159796/94‑1 (MQ=60)
                                                         TGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATA                                     >  SRR4302534.909459/1‑94 (MQ=60)
                                                         TGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATA                                     <  SRR4302534.1323918/94‑1 (MQ=60)
                                                           CCGCAGAGTTACCCACATCTTCGATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACC                                   >  SRR4302534.4456828/1‑94 (MQ=60)
                                                           CCGCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACC                                   <  SRR4302534.5142950/94‑1 (MQ=60)
                                                             GCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGG                                 >  SRR4302534.2759771/1‑94 (MQ=60)
                                                             GCAGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGG                                 >  SRR4302534.864585/1‑94 (MQ=60)
                                                               AGAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAG                               >  SRR4302534.5430365/1‑94 (MQ=60)
                                                               AGAGTTACCCACATCTTCAATAGCAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAG                               <  SRR4302534.3257764/94‑1 (MQ=60)
                                                                GAGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGG                              <  SRR4302534.4698997/94‑1 (MQ=60)
                                                                 AGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGC                             <  SRR4302534.1811709/94‑1 (MQ=60)
                                                                 AGTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGC                             >  SRR4302534.2985932/1‑94 (MQ=60)
                                                                  GTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCC                            <  SRR4302534.2519754/94‑1 (MQ=60)
                                                                  GTTACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGGCTTTGATACCGGCGGCC                            >  SRR4302534.935824/1‑94 (MQ=60)
                                                                    TACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGC                          >  SRR4302534.2440393/1‑94 (MQ=60)
                                                                    TACCCACATCTTCAATAGCAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATAACGGAGGCCGC                          >  SRR4302534.442383/1‑94 (MQ=60)
                                                                     ACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCC                         >  SRR4302534.4116046/1‑94 (MQ=60)
                                                                     ACCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGGCTTTGATACCGGAGGCCGCC                         >  SRR4302534.5749837/1‑94 (MQ=60)
                                                                      CCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCA                        <  SRR4302534.5430425/94‑1 (MQ=60)
                                                                      CCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCA                        >  SRR4302534.880005/1‑94 (MQ=60)
                                                                      CCCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCA                        >  SRR4302534.4524469/1‑94 (MQ=60)
                                                                       CCACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAG                       >  SRR4302534.2765648/1‑94 (MQ=60)
                                                                         ACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAG                     >  SRR4302534.3553611/1‑94 (MQ=60)
                                                                         ACATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAG                     <  SRR4302534.2316269/94‑1 (MQ=60)
                                                                          CATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGCAGTCTTTGATACCGGCGGACGCCAGAGA                    >  SRR4302534.2874852/1‑94 (MQ=60)
                                                                          CATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGT                    <  SRR4302534.1426467/94‑1 (MQ=60)
                                                                           ATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTA                   >  SRR4302534.6559416/1‑94 (MQ=60)
                                                                           ATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTA                   >  SRR4302534.1360882/1‑94 (MQ=60)
                                                                           ATCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTA                   <  SRR4302534.5972731/94‑1 (MQ=60)
                                                                           ATCTTCAATAGTAACGGTGCGGCGAATCGGGGGGACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGACTTTGATACCGGcgggcgccggggga                   >  SRR4302534.47198/1‑80 (MQ=60)
                                                                            TCTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTAG                  >  SRR4302534.355110/1‑94 (MQ=60)
                                                                             CTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACG                 <  SRR4302534.2363070/94‑1 (MQ=60)
                                                                             CTTCAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACG                 >  SRR4302534.4337818/1‑94 (MQ=60)
                                                                                CAATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGAT              >  SRR4302534.6221991/1‑94 (MQ=60)
                                                                                 AATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATC             <  SRR4302534.2609086/94‑1 (MQ=60)
                                                                                 AATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATC             <  SRR4302534.240450/94‑1 (MQ=60)
                                                                                  ATAGTAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCG            >  SRR4302534.2740723/1‑94 (MQ=60)
                                                                                    AGTAACGGTGCGGCGAATCGGGGTAACGGCTTCCCAATGCGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGCACGGATCGGA          >  SRR4302534.2366334/1‑94 (MQ=60)
                                                                                      TAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACC        >  SRR4302534.2628241/1‑94 (MQ=60)
                                                                                      TAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACC        >  SRR4302534.516273/1‑94 (MQ=60)
                                                                                      TAACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGCACGGATCGGACC        >  SRR4302534.1221558/1‑94 (MQ=60)
                                                                                      TAACGGTGCGGCAAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACC        <  SRR4302534.6185078/94‑1 (MQ=60)
                                                                                       AACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCA       >  SRR4302534.6416057/1‑94 (MQ=60)
                                                                                       AACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCA       <  SRR4302534.664493/94‑1 (MQ=60)
                                                                                       AACGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCA       >  SRR4302534.4024865/1‑94 (MQ=60)
                                                                                         CGGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGC     <  SRR4302534.6478454/94‑1 (MQ=60)
                                                                                          GGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGCA    <  SRR4302534.6266926/94‑1 (MQ=60)
                                                                                          GGTGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGCA    >  SRR4302534.2590491/1‑94 (MQ=60)
                                                                                            TGCGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGCAGA  <  SRR4302534.2294491/94‑1 (MQ=60)
                                                                                             |                                                                                            
GCCGTCAACGTGGACCACTTCACCGGAGATACCGGCAGAGAGATCGGAGCACAGGAATGCCGCAGAGTTACCCACATCTTCAATAGTAACGGTACGGCGAATCGGGGTAACGGCTTCGCAATGAGCCAGCATTTTGCGGAAGTCTTTGATACCGGAGGCCGCCAGAGTACGGATCGGACCAGCAGA  >  NC_000913/1348317‑1348502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑