Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,362,462	T→C	N69N (AAT→AAC)	ordL →	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,362,462	0	T	C	100.0%	951.7 / NA	274	N69N (AAT→AAC)	ordL	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (121/153); total (121/153)

Only 100 of 285 total aligned reads displayed.

GCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAATGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCAT  >  NC_000913/1362372‑1362551

gCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACgg                                                                                         <  2:3020704/93‑1 (MQ=255)

 ctctCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGc                                                                                        <  1:983459/93‑1 (MQ=255)

  tctcCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCg                                                                                       >  2:548828/1‑93 (MQ=255)

     cctccGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGAc                                                                                    >  1:1161727/1‑93 (MQ=255)

     cctccGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGAc                                                                                    >  2:4125141/1‑93 (MQ=255)

        ccGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGc                                                                                 <  1:1003045/93‑1 (MQ=255)

         cgcgCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCt                                                                                <  2:1891024/93‑1 (MQ=255)

          gcgcTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCtt                                                                               <  2:2409849/93‑1 (MQ=255)

           cgcTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTtg                                                                              >  1:1192493/1‑93 (MQ=255)

            gcTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTtgt                                                                             <  2:1113513/93‑1 (MQ=255)

            gcTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTtgt                                                                             >  1:2970234/1‑93 (MQ=255)

             cTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTtgtg                                                                            >  2:6230116/1‑93 (MQ=255)

                cATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGAGCAAGCGGGCGCAACGGCGGACAGCTTGTGAAc                                                                         >  1:4686278/1‑93 (MQ=255)

                   cTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTcc                                                                      <  1:282918/93‑1 (MQ=255)

                   cTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTcc                                                                      <  2:5658724/93‑1 (MQ=255)

                      gCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTAc                                                                   <  2:5780439/93‑1 (MQ=255)

                       cGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACa                                                                  >  2:3492491/1‑93 (MQ=255)

                       cGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACa                                                                  <  2:5862966/93‑1 (MQ=255)

                        ggAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAg                                                                 >  1:5760433/1‑93 (MQ=255)

                        ggAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAg                                                                 >  1:631699/1‑93 (MQ=255)

                        ggAAGCGGCGTTGGACGTAGTGGTCCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAg                                                                 <  1:5330689/93‑1 (MQ=255)

                         gAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGc                                                                <  1:5676238/93‑1 (MQ=255)

                         gAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGc                                                                >  2:2874957/1‑93 (MQ=255)

                         gAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGc                                                                >  2:6177633/1‑93 (MQ=255)

                          aaGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGcc                                                               <  2:5135586/93‑1 (MQ=255)

                          aaGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGcc                                                               >  1:2384289/1‑93 (MQ=255)

                           aGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCcg                                                              >  1:495121/1‑93 (MQ=255)

                           aGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCcg                                                              >  2:241308/1‑93 (MQ=255)

                           aGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCcg                                                              >  2:4220789/1‑93 (MQ=255)

                           aGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCcg                                                              >  2:4759163/1‑93 (MQ=255)

                            gCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCcgc                                                             <  1:4346153/93‑1 (MQ=255)

                             cGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCcgcg                                                            <  1:2674645/93‑1 (MQ=255)

                              gggCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGa                                                           >  2:3826709/1‑93 (MQ=255)

                                gCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACa                                                         <  2:2997116/93‑1 (MQ=255)

                                gCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACa                                                         >  1:6259147/1‑93 (MQ=255)

                                 cTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACAt                                                        <  1:4644264/93‑1 (MQ=255)

                                 cTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACAt                                                        <  2:2196529/93‑1 (MQ=255)

                                 cTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACAt                                                        <  1:2736207/93‑1 (MQ=255)

                                 cTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACAt                                                        <  2:267549/93‑1 (MQ=255)

                                  tttGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATc                                                       >  1:3858718/1‑93 (MQ=255)

                                  tttGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATc                                                       <  2:4734464/93‑1 (MQ=255)

                                  tttGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATc                                                       >  1:5445091/1‑93 (MQ=255)

                                  tttGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGAGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATc                                                       >  1:516041/1‑93 (MQ=255)

                                   ttGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCg                                                      <  1:2182264/93‑1 (MQ=255)

                                    tGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGa                                                     <  2:5374641/93‑1 (MQ=255)

                                    tGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGa                                                     <  1:2639001/93‑1 (MQ=255)

                                    tGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGa                                                     <  2:6158100/93‑1 (MQ=255)

                                     gACGTAGTGGGTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGCCATCGAc                                                    >  2:3314933/1‑93 (MQ=255)

                                       cGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGt                                                  <  1:4454257/93‑1 (MQ=255)

                                       cGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGt                                                  <  1:348622/93‑1 (MQ=255)

                                       cGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGt                                                  <  1:3245627/93‑1 (MQ=255)

                                        gTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTg                                                 >  1:4130040/1‑93 (MQ=255)

                                        gTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTg                                                 <  2:5959796/93‑1 (MQ=255)

                                          aGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGAt                                               <  1:3360185/93‑1 (MQ=255)

                                           gTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATc                                              >  1:3784012/1‑93 (MQ=255)

                                           gTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATc                                              >  1:3563107/1‑93 (MQ=255)

                                            tGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCg                                             >  1:1417229/1‑93 (MQ=255)

                                             ggTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGATTGTGAACTCCTACAGCCGCGACATCGACGTGATCGa                                            >  1:5224442/1‑93 (MQ=255)

                                                tctcGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGaaaa                                         >  2:1189590/1‑93 (MQ=255)

                                                tctcGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGaaaa                                         >  1:1867937/1‑93 (MQ=255)

                                                  tcGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGaaaaaa                                       >  2:6029002/1‑93 (MQ=255)

                                                    gAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGc                                     >  1:2550802/1‑93 (MQ=255)

                                                     aaGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCt                                    <  1:2312970/93‑1 (MQ=255)

                                                      aGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTa                                   <  2:5018104/93‑1 (MQ=255)

                                                      aGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTa                                   >  1:4597906/1‑93 (MQ=255)

                                                       gCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTAc                                  >  2:2359753/1‑93 (MQ=255)

                                                       gCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTAc                                  <  2:5435555/93‑1 (MQ=255)

                                                       gCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTAc                                  <  2:4020632/93‑1 (MQ=255)

                                                       gCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTAc                                  <  1:2277098/93‑1 (MQ=255)

                                                       gCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTAc                                  <  2:1773982/93‑1 (MQ=255)

                                                       gCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTAc                                  <  2:156971/93‑1 (MQ=255)

                                                        ccTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACg                                 <  2:2530113/93‑1 (MQ=255)

                                                        acTCACGCAGCGGCTTTGGCGAAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATACAAACAAGCTACg                                 >  1:5936091/2‑93 (MQ=255)

                                                          tCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGc                               <  1:787557/93‑1 (MQ=255)

                                                          tCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGc                               <  2:3873347/93‑1 (MQ=255)

                                                          tCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGc                               <  2:1227813/93‑1 (MQ=255)

                                                           cACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCa                              <  2:4626092/93‑1 (MQ=255)

                                                              gCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATgg                           >  1:651/1‑93 (MQ=255)

                                                              gCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATgg                           >  2:5575617/1‑93 (MQ=255)

                                                              gCATCGGCTTTGGCGCAAGCGGGCGCAACCGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATgg                           >  1:131848/1‑93 (MQ=255)

                                                               cATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGa                          <  2:4467188/93‑1 (MQ=255)

                                                               cATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGa                          <  1:3110433/93‑1 (MQ=255)

                                                                aTCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGac                         <  2:2726254/93‑1 (MQ=255)

                                                                  cGGTTTGGGCGCAGGGGGGCGCAGCGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGacac                       <  1:6115230/93‑1 (MQ=255)

                                                                    gCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCg                     <  2:1384882/93‑1 (MQ=255)

                                                                     cTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGc                    <  2:894923/93‑1 (MQ=255)

                                                                     cTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGc                    >  1:3034685/1‑93 (MQ=255)

                                                                          gcgcAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTa               <  2:5268591/93‑1 (MQ=255)

                                                                          gcgcAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTa               <  1:47462/93‑1 (MQ=255)

                                                                            gcAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATg             <  1:1683836/93‑1 (MQ=255)

                                                                             cAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGc            >  1:196464/1‑93 (MQ=255)

                                                                             cAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGc            <  2:6102423/93‑1 (MQ=255)

                                                                             cAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGc            <  1:3277248/93‑1 (MQ=255)

                                                                                 cGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCgg        <  1:3637172/93‑1 (MQ=255)

                                                                                  gggCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGgc       <  1:6219891/93‑1 (MQ=255)

                                                                                    gcgcAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGgcag     <  2:397980/93‑1 (MQ=255)

                                                                                    gcgcAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGgcag     <  2:1625576/93‑1 (MQ=255)

                                                                                     cgcAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGgcagc    >  2:4778031/1‑93 (MQ=255)

                                                                                     cgcAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGgcaga    >  2:3765680/1‑92 (MQ=255)

                                                                                       cAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCat  <  2:813283/93‑1 (MQ=255)

GCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAATGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCAT  >  NC_000913/1362372‑1362551

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CGGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAATGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCATGATG  >  NC_000913/1362369‑1362555

CGGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAAC                                                                                               >  SRR4302534.3409195/1‑94 (MQ=60)

CGGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAAC                                                                                               <  SRR4302534.820376/94‑1 (MQ=60)

CGGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAAC                                                                                               <  SRR4302534.5418157/94‑1 (MQ=60)

 GGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACG                                                                                              <  SRR4302534.697796/94‑1 (MQ=60)

 GGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACG                                                                                              >  SRR4302534.3715364/1‑94 (MQ=60)

 GGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCAACGGCTTTGGCGCAAGCGGGCGCAACG                                                                                              >  SRR4302534.2654700/1‑94 (MQ=60)

    CTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCG                                                                                           <  SRR4302534.1008569/94‑1 (MQ=60)

      CTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGA                                                                                         <  SRR4302534.4535042/94‑1 (MQ=60)

       TCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGAC                                                                                        >  SRR4302534.1192215/1‑94 (MQ=60)

       TCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGAC                                                                                        <  SRR4302534.5152687/94‑1 (MQ=60)

        CCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACA                                                                                       <  SRR4302534.1538237/94‑1 (MQ=60)

         CTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAG                                                                                      >  SRR4302534.53921/1‑94 (MQ=60)

           CCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCT                                                                                    <  SRR4302534.1028772/94‑1 (MQ=60)

             GCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTG                                                                                  >  SRR4302534.1223850/1‑94 (MQ=60)

             GCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTG                                                                                  <  SRR4302534.6309898/94‑1 (MQ=60)

              CGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGT                                                                                 >  SRR4302534.3048005/1‑94 (MQ=60)

              CGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGT                                                                                 >  SRR4302534.1237940/1‑94 (MQ=60)

               GCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTG                                                                                <  SRR4302534.3816283/94‑1 (MQ=60)

               GCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTG                                                                                <  SRR4302534.2435375/94‑1 (MQ=60)

                CTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGA                                                                               <  SRR4302534.4654941/94‑1 (MQ=60)

                CTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGA                                                                               >  SRR4302534.2361610/1‑94 (MQ=60)

                 TGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAA                                                                              <  SRR4302534.1893527/94‑1 (MQ=60)

                  GCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAAC                                                                             <  SRR4302534.4242325/94‑1 (MQ=60)

                  GCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGAGCAAGCGGGCGCAACGGCGGACAGCTTGTGAAC                                                                             >  SRR4302534.4813490/1‑94 (MQ=60)

                   CATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACT                                                                            >  SRR4302534.6478768/1‑94 (MQ=60)

                   CATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACT                                                                            <  SRR4302534.1650741/94‑1 (MQ=60)

                    ATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTC                                                                           >  SRR4302534.5235941/1‑94 (MQ=60)

                     TCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCC                                                                          <  SRR4302534.1409410/94‑1 (MQ=60)

                      CTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCT                                                                         <  SRR4302534.290226/94‑1 (MQ=60)

                      CTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCT                                                                         <  SRR4302534.4085075/94‑1 (MQ=60)

                      CTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCT                                                                         <  SRR4302534.1220589/94‑1 (MQ=60)

                       TGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTA                                                                        <  SRR4302534.362125/94‑1 (MQ=60)

                         GCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACA                                                                      <  SRR4302534.3935146/94‑1 (MQ=60)

                          CGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAG                                                                     >  SRR4302534.4931777/1‑94 (MQ=60)

                          CGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAG                                                                     >  SRR4302534.647028/1‑94 (MQ=60)

                          CGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAG                                                                     >  SRR4302534.5916702/1‑94 (MQ=60)

                           GGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGC                                                                    >  SRR4302534.6295551/1‑94 (MQ=60)

                           GGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAAATCCTACAGC                                                                    >  SRR4302534.365558/1‑94 (MQ=60)

                           GGAAGCGGCGTTGGACGTAGTGGTCCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGC                                                                    <  SRR4302534.5474454/94‑1 (MQ=60)

                            GAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCC                                                                   >  SRR4302534.2447639/1‑94 (MQ=60)

                            GAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCC                                                                   <  SRR4302534.2726795/94‑1 (MQ=60)

                            GAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCC                                                                   >  SRR4302534.3480617/1‑94 (MQ=60)

                            GAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCC                                                                   <  SRR4302534.2232050/94‑1 (MQ=60)

                            GAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCC                                                                   <  SRR4302534.5829914/94‑1 (MQ=60)

                             AAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGGGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCG                                                                  >  SRR4302534.84448/1‑94 (MQ=60)

                             AAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCG                                                                  >  SRR4302534.6124097/1‑94 (MQ=60)

                             AAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCG                                                                  >  SRR4302534.2782788/1‑94 (MQ=60)

                             AAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCG                                                                  >  SRR4302534.507475/1‑94 (MQ=60)

                              AGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGC                                                                 >  SRR4302534.2620880/1‑94 (MQ=60)

                              AGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGC                                                                 <  SRR4302534.2289976/94‑1 (MQ=60)

                              AGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGC                                                                 >  SRR4302534.3209464/1‑94 (MQ=60)

                               GCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCG                                                                <  SRR4302534.4463517/94‑1 (MQ=60)

                               GCCGGCTTTGACGTAGTTGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCG                                                                <  SRR4302534.5440293/94‑1 (MQ=60)

                                CGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGA                                                               <  SRR4302534.3658654/94‑1 (MQ=60)

                                CGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGA                                                               <  SRR4302534.2745361/94‑1 (MQ=60)

                                CGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGA                                                               >  SRR4302534.2767496/1‑94 (MQ=60)

                                 GGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGAC                                                              >  SRR4302534.3664954/1‑94 (MQ=60)

                                  GGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACA                                                             >  SRR4302534.6428734/1‑94 (MQ=60)

                                  GGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACA                                                             <  SRR4302534.3576762/94‑1 (MQ=60)

                                    CTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATC                                                           <  SRR4302534.4770326/94‑1 (MQ=60)

                                    CTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATC                                                           >  SRR4302534.5591796/1‑94 (MQ=60)

                                    CTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATC                                                           >  SRR4302534.3962316/1‑94 (MQ=60)

                                    CTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATC                                                           <  SRR4302534.6555273/94‑1 (MQ=60)

                                    CTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATC                                                           <  SRR4302534.2808327/94‑1 (MQ=60)

                                    CTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGAGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATC                                                           >  SRR4302534.528875/1‑94 (MQ=60)

                                     TTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCG                                                          <  SRR4302534.1122646/94‑1 (MQ=60)

                                     TTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCG                                                          <  SRR4302534.5480825/94‑1 (MQ=60)

                                      TTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGA                                                         <  SRR4302534.2239946/94‑1 (MQ=60)

                                       TGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGAC                                                        <  SRR4302534.2708805/94‑1 (MQ=60)

                                       TGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGAC                                                        <  SRR4302534.5342533/94‑1 (MQ=60)

                                        GACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACG                                                       >  SRR4302534.2131143/1‑94 (MQ=60)

                                        GACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACG                                                       <  SRR4302534.3029247/94‑1 (MQ=60)

                                        GACGTAGTGGTCCTCGAAGCCTCACGGATCGGCTTGGCCGCAAGCGGGCGCAACGGCGGACAGCTTGGGAACTCCTACAGCCGCGACATCGACG                                                       <  SRR4302534.1461678/94‑1 (MQ=60)

                                          CGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTG                                                     <  SRR4302534.357558/94‑1 (MQ=60)

                                          CGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTG                                                     <  SRR4302534.4574661/94‑1 (MQ=60)

                                          CGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTG                                                     <  SRR4302534.67861/94‑1 (MQ=60)

                                          CGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTG                                                     <  SRR4302534.3332031/94‑1 (MQ=60)

                                          CGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTG                                                     >  SRR4302534.4241330/1‑94 (MQ=60)

                                           GTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGA                                                    >  SRR4302534.4779007/1‑94 (MQ=60)

                                           GTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGA                                                    >  SRR4302534.5521540/1‑94 (MQ=60)

                                            TAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGAT                                                   <  SRR4302534.3749257/94‑1 (MQ=60)

                                             AGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATC                                                  <  SRR4302534.3092245/94‑1 (MQ=60)

                                             AGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATC                                                  <  SRR4302534.6246292/94‑1 (MQ=60)

                                             AGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATC                                                  <  SRR4302534.3450183/94‑1 (MQ=60)

                                             AGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATC                                                  >  SRR4302534.3658965/1‑94 (MQ=60)

                                             AGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATC                                                  >  SRR4302534.3885609/1‑94 (MQ=60)

                                              GTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCG                                                 >  SRR4302534.1454513/1‑94 (MQ=60)

                                              GTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCG                                                 >  SRR4302534.3130118/1‑94 (MQ=60)

                                               TGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGATTGTGAACTCCTACAGCCGCGACATCGACGTGATCGA                                                >  SRR4302534.5365468/1‑94 (MQ=60)

                                                  TTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAA                                             >  SRR4302534.3106560/1‑94 (MQ=60)

                                                  TTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAA                                             >  SRR4302534.1916546/1‑94 (MQ=60)

                                                  TTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAA                                             >  SRR4302534.3431112/1‑94 (MQ=60)

                                                    CTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAA                                           <  SRR4302534.2260832/94‑1 (MQ=60)

                                                      CGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGC                                         >  SRR4302534.2618430/1‑94 (MQ=60)

                                                        AAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTA                                       >  SRR4302534.4722691/1‑94 (MQ=60)

                                                        AAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTA                                       <  SRR4302534.6417360/94‑1 (MQ=60)

                                                        AAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTA                                       <  SRR4302534.2374345/94‑1 (MQ=60)

                                                        AAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTA                                       >  SRR4302534.5941487/1‑94 (MQ=60)

                                                          GCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACG                                     <  SRR4302534.2337521/94‑1 (MQ=60)

                                                          GACTCACGCAGCGGCTTTGGCGAAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATACAAACAAGCTACG                                     >  SRR4302534.6097280/1‑94 (MQ=60)

                                                           ctgCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGG                                    <  SRR4302534.34292/91‑1 (MQ=60)

                                                           CCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGG                                    >  SRR4302534.1231645/1‑94 (MQ=60)

                                                            CTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGC                                   >  SRR4302534.5795932/1‑94 (MQ=60)

                                                            CTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGC                                   >  SRR4302534.1837864/1‑94 (MQ=60)

                                                            CTCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGC                                   >  SRR4302534.5299976/1‑94 (MQ=60)

                                                             TCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCA                                  <  SRR4302534.807278/94‑1 (MQ=60)

                                                             TCACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCA                                  >  SRR4302534.2837342/1‑94 (MQ=60)

                                                              CACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCAT                                 >  SRR4302534.1213719/1‑94 (MQ=60)

                                                              CACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCAT                                 >  SRR4302534.987307/1‑94 (MQ=60)

                                                              CACACATCGGCTTTAGCGCAAGCCGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGATACGGCAT                                 >  SRR4302534.2127400/1‑94 (MQ=60)

                                                               ACGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATG                                <  SRR4302534.2004152/94‑1 (MQ=60)

                                                                CGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGG                               <  SRR4302534.2354098/94‑1 (MQ=60)

                                                                CGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGG                               <  SRR4302534.3221393/94‑1 (MQ=60)

                                                                CGCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGG                               >  SRR4302534.664/1‑94 (MQ=60)

                                                                CGCATCGGCTTTGGCGCAAGCGGGCGCAACCGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGG                               >  SRR4302534.135329/1‑94 (MQ=60)

                                                                 GCATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGA                              >  SRR4302534.3173468/1‑94 (MQ=60)

                                                                  CATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAACAAAGCTTCGGCATGGGC                             >  SRR4302534.73926/1‑94 (MQ=60)

                                                                  CATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGAC                             <  SRR4302534.3192227/94‑1 (MQ=60)

                                                                   ATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACA                            <  SRR4302534.2570888/94‑1 (MQ=60)

                                                                   ATCGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACA                            >  SRR4302534.4812049/1‑94 (MQ=60)

                                                                     CGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACC                          <  SRR4302534.4874871/94‑1 (MQ=60)

                                                                     CGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACC                          >  SRR4302534.4751118/1‑94 (MQ=60)

                                                                     CGGCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACC                          >  SRR4302534.1414637/1‑94 (MQ=60)

                                                                       GCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGC                        <  SRR4302534.5592064/94‑1 (MQ=60)

                                                                       GCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGC                        >  SRR4302534.4738690/1‑94 (MQ=60)

                                                                       GCTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGC                        >  SRR4302534.3114265/1‑94 (MQ=60)

                                                                        CTTTGGCGCAAGCGGGCGCACCGGTGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCC                       <  SRR4302534.6288275/94‑1 (MQ=60)

                                                                        CTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCC                       >  SRR4302534.2385766/1‑94 (MQ=60)

                                                                        CTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCC                       >  SRR4302534.4506859/1‑94 (MQ=60)

                                                                        CTTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCC                       >  SRR4302534.5877130/1‑94 (MQ=60)

                                                                         TTTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCC                      <  SRR4302534.6031193/94‑1 (MQ=60)

                                                                         TTTGGCGCAAGCGAGCGCAACGGCGGACAGCTTGTGACCTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCC                      <  SRR4302534.4313411/94‑1 (MQ=60)

                                                                          TTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCG                     >  SRR4302534.4628485/1‑94 (MQ=60)

                                                                          TTGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCG                     >  SRR4302534.2679759/1‑94 (MQ=60)

                                                                           TGGCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGT                    <  SRR4302534.2508533/94‑1 (MQ=60)

                                                                             GCGCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTAT                  <  SRR4302534.48734/94‑1 (MQ=60)

                                                                               GCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGC                >  SRR4302534.6425971/1‑94 (MQ=60)

                                                                               GCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGC                <  SRR4302534.1727630/94‑1 (MQ=60)

                                                                               GCAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGC                >  SRR4302534.201616/1‑94 (MQ=60)

                                                                                CAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCT               <  SRR4302534.299527/94‑1 (MQ=60)

                                                                                CAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCT               <  SRR4302534.3364592/94‑1 (MQ=60)

                                                                                CAAGCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAACCTACGGCATGGACACCGCCCGTATGCT               >  SRR4302534.2881596/1‑94 (MQ=60)

                                                                                  AGCGGGCGCCACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCG             >  SRR4302534.6479024/1‑94 (MQ=60)

                                                                                   GCGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGG            >  SRR4302534.334068/1‑94 (MQ=60)

                                                                                    CGGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGC           <  SRR4302534.3734930/94‑1 (MQ=60)

                                                                                     GGGCGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCA          <  SRR4302534.6388840/94‑1 (MQ=60)

                                                                                        CGCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCA       >  SRR4302534.4985314/1‑94 (MQ=60)

                                                                                         GCAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCAT      >  SRR4302534.4192705/1‑94 (MQ=60)

                                                                                          CAACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCATG     >  SRR4302534.1720032/1‑94 (MQ=60)

                                                                                           AACGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCATGA    >  SRR4302534.863812/1‑94 (MQ=60)

                                                                                             CGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCATGATG  >  SRR4302534.3054182/1‑94 (MQ=60)

CGGGCTCTCCTCCGCGCTGCATCTGGCGGAAGCGGGCTTTGACGTAGTGGTTCTCGAAGCCTCACGCATCGGCTTTGGCGCAAGCGGGCGCAATGGCGGACAGCTTGTGAACTCCTACAGCCGCGACATCGACGTGATCGAAAAAAGCTACGGCATGGACACCGCCCGTATGCTCGGCAGCATGATG  >  NC_000913/1362369‑1362555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`