Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,428,051 |
G→A |
A329T (GCA→ACA) |
b1372 → |
putative membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,428,051 | 0 | G | A | 99.6%
| 851.2
/ ‑5.2
| 230 | A329T (GCA→ACA) | b1372 | putative membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (121/108); total (122/108) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01 |
Only 100 of 245 total aligned reads displayed.
GGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTC > NC_000913/1427961‑1428139
|
ggCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACa < 1:4532770/93‑1 (MQ=255)
gCTCAAAAACAGCGTCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAg < 1:3889677/93‑1 (MQ=255)
gCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAg > 2:2429757/1‑93 (MQ=255)
gCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAg > 2:5930343/1‑93 (MQ=255)
gCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAg > 2:109573/1‑93 (MQ=255)
cTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGa > 1:3234468/1‑93 (MQ=255)
tCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGaa < 1:3782223/93‑1 (MQ=255)
cAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGaaa < 2:5637463/93‑1 (MQ=255)
cAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGaaa < 2:454588/93‑1 (MQ=255)
aaaaaCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAg < 1:6380660/93‑1 (MQ=255)
aaaaCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGGAAATCGACAGAAAgc > 1:2228322/1‑93 (MQ=255)
aaaCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAgcg < 2:6091654/93‑1 (MQ=255)
aaaCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAgcg < 1:4486306/93‑1 (MQ=255)
aaaCAGCGGCTGCGTCGCCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGAAAGAAAgcg < 1:6277361/93‑1 (MQ=255)
aCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGcgcc > 2:5141593/1‑93 (MQ=255)
aCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGcgcc < 1:6005404/93‑1 (MQ=255)
aGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGcgccgc > 2:4648570/1‑93 (MQ=255)
aGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGcgccgc > 1:5556862/1‑93 (MQ=255)
cGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCAt < 1:2653880/93‑1 (MQ=255)
ggCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATc > 1:2953437/1‑93 (MQ=255)
ggCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATc > 1:4768685/1‑93 (MQ=255)
cTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGt < 1:5889757/93‑1 (MQ=255)
tGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTc < 1:181474/93‑1 (MQ=255)
ggCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTc < 2:2938910/92‑1 (MQ=255)
gCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCt > 2:3005131/1‑93 (MQ=255)
gCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCt > 1:3731727/1‑93 (MQ=255)
gCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCt < 1:5142086/93‑1 (MQ=255)
gtcgtcTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGc > 1:1079521/1‑93 (MQ=255)
gtcTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTc > 1:6040711/1‑93 (MQ=255)
tcTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCa > 2:4231625/1‑93 (MQ=255)
tGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAAc < 2:1934427/93‑1 (MQ=255)
cccAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACa < 1:5527693/92‑1 (MQ=255)
aGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGcc > 2:5295972/1‑93 (MQ=255)
gTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCca > 1:4704956/1‑93 (MQ=255)
tGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGTCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCcac < 2:4170332/93‑1 (MQ=255)
aGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAAc < 2:2597628/93‑1 (MQ=255)
gCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACg > 1:37265/1‑93 (MQ=255)
gCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACATCCACAACg > 2:5512348/1‑93 (MQ=255)
gCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACg > 2:1539290/1‑93 (MQ=255)
gTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGaa < 2:2286983/93‑1 (MQ=255)
tCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAg > 1:4499271/1‑93 (MQ=255)
caccaaGTGCCGGGCAGCCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAgg < 1:307114/90‑1 (MQ=255)
caacaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAgg < 1:1890826/93‑1 (MQ=255)
aacaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGc > 1:1232994/1‑93 (MQ=255)
aacaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGc > 1:4621497/1‑93 (MQ=255)
aacaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGc > 1:3552498/1‑93 (MQ=255)
aacaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGc < 2:3845715/93‑1 (MQ=255)
aacaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGc > 1:2386712/1‑93 (MQ=255)
acaaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCt < 1:851110/93‑1 (MQ=255)
caaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTg < 2:6184858/93‑1 (MQ=255)
caaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTg < 2:5192488/93‑1 (MQ=255)
caaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTg < 2:275076/93‑1 (MQ=255)
aaGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTgg > 2:4846110/1‑93 (MQ=255)
aaGGGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTgg < 2:2535366/93‑1 (MQ=255)
aGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGc > 2:2033112/1‑93 (MQ=255)
tGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGa > 2:4981448/1‑93 (MQ=255)
cGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGc < 1:1965928/93‑1 (MQ=255)
cGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGc < 2:6422646/93‑1 (MQ=255)
gggCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGcc < 1:5619149/93‑1 (MQ=255)
ggCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGccc > 1:1163156/1‑92 (MQ=255)
ggCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCa > 1:425937/1‑93 (MQ=255)
ggCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCa < 2:3519177/93‑1 (MQ=255)
gCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCATCAGCCACAACGAAGGCTGGCGAAGCCAc < 1:5791926/93‑1 (MQ=255)
ggCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGa > 2:5332968/1‑93 (MQ=255)
ccTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAAc > 1:2605539/1‑93 (MQ=255)
cTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACa > 2:1274270/1‑93 (MQ=255)
cTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACa < 2:477181/93‑1 (MQ=255)
cTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACa < 1:129916/93‑1 (MQ=255)
tCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAg > 2:1798023/1‑93 (MQ=255)
tCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAg < 1:745351/93‑1 (MQ=255)
tCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAg > 1:2054027/1‑93 (MQ=255)
tCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAg > 2:4206361/1‑93 (MQ=255)
ccAGCCAGTGCCCCCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAg < 2:1011901/92‑1 (MQ=255)
gCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGcc < 2:3991597/93‑1 (MQ=255)
ccAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCa < 2:3501036/93‑1 (MQ=255)
cAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAg > 1:336976/1‑93 (MQ=255)
aGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAgc > 1:1437560/1‑93 (MQ=255)
aGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAgc > 2:701224/1‑93 (MQ=255)
aGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAgc > 2:5296594/1‑93 (MQ=255)
gTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAgcg > 2:2170599/1‑93 (MQ=255)
gCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCgca > 2:377935/1‑93 (MQ=255)
cACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCgcagc < 1:3329503/93‑1 (MQ=255)
cACCGCCGCCGAAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCgcagc < 1:826858/93‑1 (MQ=255)
cgccgccgGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCagcagc < 2:4299068/93‑1 (MQ=255)
gccgccgGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCg > 1:4183268/1‑93 (MQ=255)
ccgccgAAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGa < 2:3324696/93‑1 (MQ=255)
gccgGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAgg > 1:2305857/1‑93 (MQ=255)
ccgGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGt < 1:5917735/93‑1 (MQ=255)
cgGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTc < 1:6456742/93‑1 (MQ=255)
ggAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCt > 2:4512653/1‑93 (MQ=255)
ggAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCt > 1:5088649/1‑93 (MQ=255)
ggAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCt > 1:5305815/1‑93 (MQ=255)
ggAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCt > 2:2310338/1‑93 (MQ=255)
ggAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCt > 2:2324250/1‑93 (MQ=255)
gaaaaaTCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCt < 2:5699152/91‑1 (MQ=255)
gAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTg > 1:3986556/1‑93 (MQ=255)
aaaaGCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGc < 2:3697573/93‑1 (MQ=255)
aaaTCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCt > 1:48657/1‑93 (MQ=255)
aaTCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCtt > 2:5252433/1‑93 (MQ=255)
aaTCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGACCCTGCACAGGGCAGCGCAGCAGCGAGGTCTGCtt > 2:3170830/1‑93 (MQ=255)
|
GGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTC > NC_000913/1427961‑1428139
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCCGCA > NC_000913/1427958‑1428143
|
GCAGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGA > SRR4302534.662864/1‑94 (MQ=60)
CAGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGAC > SRR4302534.2231254/1‑94 (MQ=60)
AGGCTCAAACGCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACA < SRR4302534.282261/94‑1 (MQ=60)
AGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACA > SRR4302534.987422/1‑94 (MQ=60)
AGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACA > SRR4302534.855748/1‑94 (MQ=60)
AGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACA > SRR4302534.324022/1‑94 (MQ=60)
GGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAG < SRR4302534.4655601/94‑1 (MQ=60)
GGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAG > SRR4302534.6189132/1‑94 (MQ=60)
GCTCAAAAACAGCGTCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGA < SRR4302534.3994093/94‑1 (MQ=60)
GCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGA > SRR4302534.3320479/1‑94 (MQ=60)
CTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAA < SRR4302534.1661213/94‑1 (MQ=60)
TCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAA < SRR4302534.3883775/94‑1 (MQ=60)
AAAACCAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGC < SRR4302534.2079253/94‑1 (MQ=60)
AAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGGAAATCGACAGAAAGC > SRR4302534.2287343/1‑94 (MQ=60)
AAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGC < SRR4302534.6553011/94‑1 (MQ=60)
AAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCG > SRR4302534.4705179/1‑94 (MQ=60)
AAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGC < SRR4302534.4607695/94‑1 (MQ=60)
AAACAGCGGCTGCGTCGCCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGAAAGAAAGCGC < SRR4302534.6447270/94‑1 (MQ=60)
ACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCG < SRR4302534.6168550/94‑1 (MQ=60)
CAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGC > SRR4302534.5706886/1‑94 (MQ=60)
AGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCA > SRR4302534.6153361/1‑94 (MQ=60)
GCGGTCGCGTCGTCTGCCAGTGCGGCGTAACCAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCAT < SRR4302534.2679980/94‑1 (MQ=60)
CGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATC > SRR4302534.4898156/1‑94 (MQ=60)
CGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATC > SRR4302534.3030865/1‑94 (MQ=60)
CGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATC < SRR4302534.2724067/94‑1 (MQ=60)
CGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATC < SRR4302534.2219461/94‑1 (MQ=60)
GGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCG < SRR4302534.4645484/94‑1 (MQ=60)
GGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCG > SRR4302534.1388332/1‑94 (MQ=60)
GCTGCGTCTTCTGCCAGTGCAGCTCCAAGAAGTGCCGGGCAGGCCTCCGCCACTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGT < SRR4302534.1790690/94‑1 (MQ=60)
CTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTC < SRR4302534.6049676/94‑1 (MQ=60)
CTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTC < SRR4302534.6577495/94‑1 (MQ=60)
TGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCT > SRR4302534.3831996/1‑94 (MQ=60)
TGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCT < SRR4302534.186246/94‑1 (MQ=60)
TGCGTCGTCTGCCAGTGCAGCGTAAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCGCCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCT < SRR4302534.1035606/94‑1 (MQ=60)
GCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTG < SRR4302534.5280851/94‑1 (MQ=60)
CGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGC < SRR4302534.4817017/94‑1 (MQ=60)
CGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGC > SRR4302534.1107578/1‑94 (MQ=60)
GTCGCCTGCCAGTGCAGCTTCAACAAGTGCTGGGCAGGCCTCAGCCAGTGCCCCCGCAGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCT < SRR4302534.992931/94‑1 (MQ=60)
TCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTT < SRR4302534.1855315/94‑1 (MQ=60)
CGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTC > SRR4302534.6204900/1‑94 (MQ=60)
CGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTC > SRR4302534.410205/1‑94 (MQ=60)
GTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCA > SRR4302534.2714470/1‑94 (MQ=60)
CTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAAC > SRR4302534.776711/1‑94 (MQ=60)
CTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAAC < SRR4302534.4607253/94‑1 (MQ=60)
GCCAGTGCAGCGTCAACAAGTGCGGGCCAGGCATCAGCCAGTCCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGGATCGTCTGCTTCAACAG < SRR4302534.1484923/94‑1 (MQ=60)
CCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAG < SRR4302534.5676878/94‑1 (MQ=60)
CCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGC > SRR4302534.2000524/1‑94 (MQ=60)
CCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGC > SRR4302534.1315273/1‑94 (MQ=60)
CCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGC > SRR4302534.4063440/1‑94 (MQ=60)
AGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCA > SRR4302534.4832677/1‑94 (MQ=60)
GTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCAC > SRR4302534.5652893/1‑94 (MQ=60)
CAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAAC < SRR4302534.2265943/94‑1 (MQ=60)
CAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAAC > SRR4302534.1903475/1‑94 (MQ=60)
AGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACG > SRR4302534.38257/1‑94 (MQ=60)
GCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGA < SRR4302534.1321869/94‑1 (MQ=60)
CGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAA < SRR4302534.1262185/94‑1 (MQ=60)
GTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAG > SRR4302534.4621054/1‑94 (MQ=60)
GTCAACAAGTGCCGGGCAGGCCTCAGACAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAG > SRR4302534.3857025/1‑94 (MQ=60)
CACCAAGTGCCGGGCAGCCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGC < SRR4302534.315032/94‑1 (MQ=60)
CAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGC > SRR4302534.4746896/1‑94 (MQ=60)
CAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGC > SRR4302534.3648032/1‑94 (MQ=60)
CAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGC < SRR4302534.1940138/94‑1 (MQ=60)
CAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGC > SRR4302534.2450133/1‑94 (MQ=60)
CAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGC > SRR4302534.1265487/1‑94 (MQ=60)
ACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTG < SRR4302534.872573/94‑1 (MQ=60)
ACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTG < SRR4302534.2414440/94‑1 (MQ=60)
CAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGG > SRR4302534.698147/1‑94 (MQ=60)
AAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGC > SRR4302534.5952979/1‑94 (MQ=60)
AGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCG < SRR4302534.388933/94‑1 (MQ=60)
TGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAA > SRR4302534.5847862/1‑94 (MQ=60)
GCCGGGGAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGGAAGCGCCGCATCGACTGATTCAACAGCCACAACGAAGACTGGCGAAG > SRR4302534.963929/1‑94 (MQ=60)
GCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAG < SRR4302534.197297/94‑1 (MQ=60)
CGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCC < SRR4302534.2017388/94‑1 (MQ=60)
GGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCC > SRR4302534.1193684/1‑94 (MQ=60)
GGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCA > SRR4302534.436808/1‑94 (MQ=60)
GGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCA < SRR4302534.5771182/94‑1 (MQ=60)
GCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCATCAGCCACAACGAAGGCTGGCGAAGCCACT < SRR4302534.5949068/94‑1 (MQ=60)
GCAGCCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACT < SRR4302534.5694910/94‑1 (MQ=60)
GAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTG < SRR4302534.6242475/94‑1 (MQ=60)
AGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCACCAGCCACAACGAAGGCTGGCGAAGCCACTGA < SRR4302534.777196/94‑1 (MQ=60)
GGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAA < SRR4302534.4863126/94‑1 (MQ=60)
GCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCACCAGCCACAACGAAGGCTGGCGAAGCCACTGAAC < SRR4302534.4369153/94‑1 (MQ=60)
GCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAAC > SRR4302534.2674481/1‑94 (MQ=60)
CCGCAGCCAGTGCCCCCGCCGCTGAAAAATCGACAGAAAGCGCCGCTTCGTCTGCTTCAACAGCCACATCGAAGGCTGGCGAAGCCACTGAACA < SRR4302534.5246398/94‑1 (MQ=60)
CTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAG > SRR4302534.3332930/1‑94 (MQ=60)
CTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAG > SRR4302534.2107699/1‑94 (MQ=60)
CTCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAG < SRR4302534.133352/94‑1 (MQ=60)
TCAGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGG < SRR4302534.763824/94‑1 (MQ=60)
AGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCC < SRR4302534.2539574/94‑1 (MQ=60)
AGCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCC > SRR4302534.343977/1‑94 (MQ=60)
GCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCA < SRR4302534.3831271/94‑1 (MQ=60)
GCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCA > SRR4302534.5100149/1‑94 (MQ=60)
GCCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCA > SRR4302534.3450333/1‑94 (MQ=60)
CCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAG > SRR4302534.4619447/1‑94 (MQ=60)
CCAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAG > SRR4302534.345604/1‑94 (MQ=60)
CCAGTGCCACCGCCGCCGAAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAG < SRR4302534.4636589/94‑1 (MQ=60)
CAGTGCCACCGCCGCGGGAAAATCGACAGAAAGCGCCGCATGGTCTCCTGCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGC < SRR4302534.6348738/94‑1 (MQ=60)
CAGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGC > SRR4302534.1475404/1‑94 (MQ=60)
AGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCG > SRR4302534.1134178/1‑94 (MQ=60)
AGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCG > SRR4302534.2985329/1‑94 (MQ=60)
AGTGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCG > SRR4302534.4580747/1‑94 (MQ=60)
TGCCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCA < SRR4302534.6506215/94‑1 (MQ=60)
CCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGC > SRR4302534.5341173/1‑94 (MQ=60)
CCACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGC > SRR4302534.6157920/1‑94 (MQ=60)
tacgGCCGCCGGAAAATCGGCAGACAGCGTCGCATCGACTGGTTCAGAAGCCACAACGAAGGATAGCGAAGCCACTGAACAGGGCAGCGCAGCA > SRR4302534.4172619/5‑94 (MQ=46)
CACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCA < SRR4302534.3418559/94‑1 (MQ=60)
CACCGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCA > SRR4302534.506519/1‑94 (MQ=60)
CACCGCCGCCGAAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCA < SRR4302534.847666/94‑1 (MQ=60)
CGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCG < SRR4302534.2869892/94‑1 (MQ=60)
CGCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCG > SRR4302534.4296326/1‑94 (MQ=60)
GCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGA > SRR4302534.5684144/1‑94 (MQ=60)
GCCGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCAAGCGCAGCAGCGG > SRR4302534.5725238/1‑94 (MQ=60)
GCCGCCGAAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGA < SRR4302534.2289521/94‑1 (MQ=60)
CGCCGGAAAATCGAGAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACCACGAAAACTCGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGG > SRR4302534.5376520/1‑94 (MQ=60)
CGCCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGG > SRR4302534.2367062/1‑94 (MQ=60)
CCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTC < SRR4302534.6078418/94‑1 (MQ=60)
CCGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTC < SRR4302534.4897259/94‑1 (MQ=60)
CGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCT > SRR4302534.5225986/1‑94 (MQ=60)
CGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCT > SRR4302534.5448967/1‑94 (MQ=60)
CGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCT < SRR4302534.3565211/94‑1 (MQ=60)
CGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCT < SRR4302534.4281357/94‑1 (MQ=60)
CGGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCC < SRR4302534.6630695/94‑1 (MQ=60)
CGAAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCT < SRR4302534.3725052/94‑1 (MQ=60)
GGAAAATCTACAGAAAGCGCCGCATCGTCTGCTTCAACCGCCACAACGAAGGCTGGCGAAGCCACTGCACAGGCCAGCGCcgcacgcaggtctg > SRR4302534.3070808/1‑80 (MQ=60)
GGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCCGCAGCGAGGTacg > SRR4302534.2657551/1‑91 (MQ=60)
GGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTG > SRR4302534.371353/1‑94 (MQ=60)
GGAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTG > SRR4302534.4093230/1‑94 (MQ=60)
GAAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGGCTGC > SRR4302534.6592103/1‑94 (MQ=60)
AAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCT > SRR4302534.49961/1‑94 (MQ=60)
AAAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCT > SRR4302534.3914286/1‑94 (MQ=60)
AAAATAGACAGAAAGCGCCGCATCGTTTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCCCTGAACAGGCCAGGCCAGCAGCGCTGTCTGCT > SRR4302534.580402/1‑94 (MQ=60)
AAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTT < SRR4302534.6058143/94‑1 (MQ=60)
AAATCGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGACAGCGCAGCAGCGAGGTCTGCTT > SRR4302534.3114110/1‑94 (MQ=60)
AAATCGACAGAAACCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTT < SRR4302534.4930696/94‑1 (MQ=60)
aaccaGCAGAAAGCGCCACACCGTCTCCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGTCCAGCGCAGCAGCGAGGTCTTCTTC < SRR4302534.2098817/89‑1 (MQ=60)
ATCGACAGAAAGCGCCGCATCTTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCC < SRR4302534.3217285/94‑1 (MQ=60)
CGACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCCGC > SRR4302534.2786005/1‑94 (MQ=60)
GACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCCGCA > SRR4302534.5511878/1‑94 (MQ=60)
GACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCCGCA > SRR4302534.5027425/1‑94 (MQ=60)
GACAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCCGCA > SRR4302534.4270036/1‑94 (MQ=60)
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GCAGGCTCAAAAACAGCGGCTGCGTCGTCTGCCAGTGCAGCGTCAACAAGTGCCGGGCAGGCCTCAGCCAGTGCCACCGCCGCCGGAAAATCGGCAGAAAGCGCCGCATCGTCTGCTTCAACAGCCACAACGAAGGCTGGCGAAGCCACTGAACAGGCCAGCGCAGCAGCGAGGTCTGCTTCCGCA > NC_000913/1427958‑1428143
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
