Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,445,328 A→G intergenic (‑21/‑215) feaR ← / → feaB FeaR/phenylacetaldehyde dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,445,3280AG100.0% 844.6 / NA 237intergenic (‑21/‑215)feaR/feaBFeaR/phenylacetaldehyde dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (101/136);  total (101/136)

Only 100 of 239 total aligned reads displayed.

TAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAAATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATA  >  NC_000913/1445238‑1445417
                                                                                          |                                                                                         
tAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGAt                                                                                         <  1:679146/93‑1 (MQ=255)
 aaaaTTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATg                                                                                        <  2:2239885/93‑1 (MQ=255)
 aaaaTTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATg                                                                                        <  2:39021/93‑1 (MQ=255)
   aaTTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTa                                                                                      >  2:3857219/1‑93 (MQ=255)
   aaTTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTa                                                                                      <  1:4933325/93‑1 (MQ=255)
   aaTTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTa                                                                                      <  1:4931172/93‑1 (MQ=255)
    aTTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTAt                                                                                     >  1:2734184/1‑93 (MQ=255)
           cATACCTGATTGATTTGGGAAAGCNATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAtt                                                                              <  1:122668/93‑1 (MQ=255)
           cATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAtt                                                                              >  1:2696279/1‑93 (MQ=255)
            aTACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAttg                                                                             <  2:5275638/93‑1 (MQ=255)
             tACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAttgt                                                                            >  1:4069654/1‑93 (MQ=255)
             tACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAttgt                                                                            <  1:4003654/93‑1 (MQ=255)
              aCCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAttgtt                                                                           <  1:3458201/93‑1 (MQ=255)
               ccTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAttgttg                                                                          >  1:560794/1‑93 (MQ=255)
               ccTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTAttgttg                                                                          >  2:1091983/1‑93 (MQ=255)
                cTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGc                                                                         >  1:5742022/1‑93 (MQ=255)
                cTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGc                                                                         >  2:2054840/1‑93 (MQ=255)
                cTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGc                                                                         >  2:151296/1‑93 (MQ=255)
                 tgattgatTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCa                                                                        >  1:1994708/1‑93 (MQ=255)
                 tgattgatTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCa                                                                        >  1:1657079/1‑93 (MQ=255)
                  gattgattTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCAt                                                                       <  1:1142531/93‑1 (MQ=255)
                   attgattTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCAtt                                                                      <  1:193941/93‑1 (MQ=255)
                   attgattTGGGAAACCCCTTGCTGACACTAATTATCCACTGCGGGGTTCATGGCACGTTTGCGCTCTGTGAGATGTATTTTTATTGTTGCAtt                                                                      >  1:6185981/1‑93 (MQ=255)
                     tgattTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTtg                                                                    <  1:4336158/93‑1 (MQ=255)
                      tattTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTtgt                                                                   <  2:1327764/92‑1 (MQ=255)
                      gattTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTtgt                                                                   <  1:4815885/93‑1 (MQ=255)
                       ttttGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTtgtg                                                                  >  1:4155239/2‑93 (MQ=255)
                        tttGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTgtgt                                                                 <  2:4442584/93‑1 (MQ=255)
                        tttGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTgtgt                                                                 <  2:448684/93‑1 (MQ=255)
                         ttGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGtt                                                                >  2:2318995/1‑93 (MQ=255)
                          tGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTg                                                               >  1:1434939/1‑93 (MQ=255)
                           gggAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGc                                                              >  1:6109091/1‑93 (MQ=255)
                            ggAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCa                                                             >  2:570171/1‑93 (MQ=255)
                              aaaGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAAt                                                           <  1:5094588/93‑1 (MQ=255)
                               aaGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATa                                                          <  2:5943354/93‑1 (MQ=255)
                                 gCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATaaa                                                        <  2:3632930/93‑1 (MQ=255)
                                 gCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATaaa                                                        <  2:2533114/93‑1 (MQ=255)
                                  ccATTGCTGAAACTCATGATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAAc                                                       <  2:3779611/93‑1 (MQ=255)
                                   cATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACg                                                      >  2:2842135/1‑93 (MQ=255)
                                    aTTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGa                                                     >  2:3108684/1‑93 (MQ=255)
                                    aTTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGa                                                     >  1:2174595/1‑93 (MQ=255)
                                     ttGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGaa                                                    <  2:3816172/93‑1 (MQ=255)
                                      tGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAg                                                   >  2:5779620/1‑93 (MQ=255)
                                       gCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGc                                                  <  2:1393688/93‑1 (MQ=255)
                                        cTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCt                                                 <  2:3253162/93‑1 (MQ=255)
                                         tGAAACTCATTATCCACTGCGGGGGTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTa                                                >  1:5396065/1‑93 (MQ=255)
                                          gAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTaa                                               <  1:1575227/93‑1 (MQ=255)
                                          gAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTaa                                               <  2:2959800/93‑1 (MQ=255)
                                           aaaCTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAAt                                              <  2:4207819/93‑1 (MQ=255)
                                           aaaCTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAAt                                              >  2:1648522/1‑93 (MQ=255)
                                            aaCTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATg                                             <  1:1770253/93‑1 (MQ=255)
                                             aCTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGa                                            <  1:4658332/93‑1 (MQ=255)
                                              cTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAg                                           >  2:6248722/1‑93 (MQ=255)
                                                cATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGcc                                         >  2:3527726/1‑93 (MQ=255)
                                                cATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGcc                                         >  1:6403240/1‑93 (MQ=255)
                                                 aTTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCt                                        <  1:2339767/93‑1 (MQ=255)
                                                 aTTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCt                                        >  2:1567673/1‑93 (MQ=255)
                                                   tATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGa                                      >  2:6413911/1‑93 (MQ=255)
                                                    gtCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGAc                                     <  1:3206535/92‑1 (MQ=255)
                                                    aTCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGAc                                     <  1:3317386/93‑1 (MQ=255)
                                                     tCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACt                                    >  2:2683178/1‑93 (MQ=255)
                                                       cACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACtat                                  >  1:5487383/1‑93 (MQ=255)
                                                       cACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACtat                                  <  2:3331808/93‑1 (MQ=255)
                                                        aCTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACtata                                 >  1:4842717/1‑93 (MQ=255)
                                                            cGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGaa                             <  2:4085838/93‑1 (MQ=255)
                                                             ggggTTCATGGCGCGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGaaa                            <  1:1418017/93‑1 (MQ=255)
                                                              gggTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAAt                           >  1:803666/1‑93 (MQ=255)
                                                                gTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGtaataa                         <  1:1810774/93‑1 (MQ=255)
                                                                gTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATaa                         <  1:1278597/93‑1 (MQ=255)
                                                                   cATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTc                      >  1:284491/1‑93 (MQ=255)
                                                                   cATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTc                      >  1:3138633/1‑93 (MQ=255)
                                                                    aTGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCt                     <  1:136966/93‑1 (MQ=255)
                                                                    aTGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCt                     <  1:1865934/93‑1 (MQ=255)
                                                                    aTGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCt                     >  2:4621248/1‑93 (MQ=255)
                                                                    aTGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCt                     >  1:3735097/1‑93 (MQ=255)
                                                                     tGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCtt                    <  2:4219331/93‑1 (MQ=255)
                                                                       gCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTga                  >  2:3568442/1‑92 (MQ=255)
                                                                        cACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTc                 <  1:3764919/93‑1 (MQ=255)
                                                                         aCGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCa                <  1:2322881/93‑1 (MQ=255)
                                                                         aCGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCa                <  1:962290/93‑1 (MQ=255)
                                                                          cGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAg               <  2:2748435/93‑1 (MQ=255)
                                                                          cGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAg               <  2:3186648/93‑1 (MQ=255)
                                                                           gTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAgg              >  2:188660/1‑93 (MQ=255)
                                                                            ttttCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGc             >  2:815435/1‑93 (MQ=255)
                                                                            ttttCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGc             >  1:5166781/1‑93 (MQ=255)
                                                                              ttCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCAt           <  2:1784354/93‑1 (MQ=255)
                                                                               tCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATa          <  1:5117611/93‑1 (MQ=255)
                                                                               tCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATa          <  1:2997558/93‑1 (MQ=255)
                                                                                 gCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATaga        >  2:6149483/1‑93 (MQ=255)
                                                                                 gCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATaga        >  1:5639811/1‑93 (MQ=255)
                                                                                 gCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATaga        >  2:2835145/1‑93 (MQ=255)
                                                                                  ctctGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATagag       >  2:6032997/1‑93 (MQ=255)
                                                                                   tctGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAgaga      >  1:4482922/1‑93 (MQ=255)
                                                                                    ctGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGAc     <  1:6122347/93‑1 (MQ=255)
                                                                                    ctGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTATTGTCAGGCATAGAGAc     >  2:1177973/1‑93 (MQ=255)
                                                                                     tgtgAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACa    >  1:766390/1‑93 (MQ=255)
                                                                                      gtgAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACAt   >  2:4878176/1‑93 (MQ=255)
                                                                                      gtgAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACAt   >  2:721012/1‑93 (MQ=255)
                                                                                       tgAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATa  >  2:5601836/1‑93 (MQ=255)
                                                                                       tgAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATa  <  2:3747698/93‑1 (MQ=255)
                                                                                          |                                                                                         
TAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAAATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATA  >  NC_000913/1445238‑1445417

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGGTAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAAATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATAAGCG  >  NC_000913/1445235‑1445421
                                                                                             |                                                                                             
CGGTAAAATTTCCGCATACCTGATTGATTTTGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAG                                                                                               <  SRR4302534.401256/94‑1 (MQ=60)
CGGTAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAG                                                                                               >  SRR4302534.1555552/1‑94 (MQ=60)
 GGTAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGA                                                                                              <  SRR4302534.4174066/94‑1 (MQ=60)
   TAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATG                                                                                            <  SRR4302534.695734/94‑1 (MQ=60)
   TAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATG                                                                                            <  SRR4302534.5315361/94‑1 (MQ=60)
      AATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTAT                                                                                         <  SRR4302534.5064822/94‑1 (MQ=60)
      AATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTAT                                                                                         >  SRR4302534.2806266/1‑94 (MQ=60)
      AATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTAT                                                                                         <  SRR4302534.5067018/94‑1 (MQ=60)
      AATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTAT                                                                                         <  SRR4302534.5067019/94‑1 (MQ=60)
       ATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATT                                                                                        >  SRR4302534.6358569/1‑94 (MQ=60)
        TTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTT                                                                                       <  SRR4302534.242198/94‑1 (MQ=60)
             GCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATT                                                                                  >  SRR4302534.2767520/1‑94 (MQ=60)
              CATACCTGATTGATTTGGGAAAGCNATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTG                                                                                 <  SRR4302534.125910/94‑1 (MQ=60)
              CATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTG                                                                                 <  SRR4302534.3447745/94‑1 (MQ=60)
               ATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGT                                                                                <  SRR4302534.6305498/94‑1 (MQ=60)
               ATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGT                                                                                >  SRR4302534.4178855/1‑94 (MQ=60)
                TACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTT                                                                               <  SRR4302534.193459/94‑1 (MQ=60)
                TACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTT                                                                               <  SRR4302534.4110856/94‑1 (MQ=60)
                 ACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTG                                                                              <  SRR4302534.3059680/94‑1 (MQ=60)
                 ACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTG                                                                              <  SRR4302534.3149389/94‑1 (MQ=60)
                 ACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTG                                                                              <  SRR4302534.3551163/94‑1 (MQ=60)
                 ACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTG                                                                              <  SRR4302534.800796/94‑1 (MQ=60)
                 ACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTG                                                                              <  SRR4302534.4949195/94‑1 (MQ=60)
                 ACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTG                                                                              >  SRR4302534.574595/1‑94 (MQ=60)
                  CCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGC                                                                             >  SRR4302534.5897664/1‑94 (MQ=60)
                   CTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGGA                                                                            <  SRR4302534.5050465/94‑1 (MQ=60)
                   CTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCA                                                                            >  SRR4302534.1700262/1‑94 (MQ=60)
                   CTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCA                                                                            <  SRR4302534.1356722/94‑1 (MQ=60)
                   CTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCA                                                                            >  SRR4302534.2046955/1‑94 (MQ=60)
                   CTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCA                                                                            <  SRR4302534.2305839/94‑1 (MQ=60)
                    TGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCAT                                                                           <  SRR4302534.1790525/94‑1 (MQ=60)
                    TGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCAT                                                                           >  SRR4302534.1992451/1‑94 (MQ=60)
                     GATTTATTTGGGAAAGCCATTGCTGAAACTCATTATCCAGTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATT                                                                          <  SRR4302534.1441180/94‑1 (MQ=60)
                     GATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATT                                                                          <  SRR4302534.1172442/94‑1 (MQ=60)
                     GATTGATTTGGGAAACCCCTTGCTGACACTAATTATCCACTGCGGGGTTCATGGCACGTTTGCGCTCTGTGAGATGTATTTTTATTGTTGCATT                                                                          >  SRR4302534.6354336/1‑94 (MQ=60)
                      ATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTT                                                                         <  SRR4302534.199016/94‑1 (MQ=60)
                       TTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTG                                                                        <  SRR4302534.2809777/94‑1 (MQ=60)
                       TTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTG                                                                        <  SRR4302534.3864663/94‑1 (MQ=60)
                        TGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGT                                                                       <  SRR4302534.4453370/94‑1 (MQ=60)
                        TGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGT                                                                       <  SRR4302534.776623/94‑1 (MQ=60)
                         GTTTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTG                                                                      >  SRR4302534.4267430/1‑94 (MQ=60)
                         GATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTG                                                                      <  SRR4302534.4946608/94‑1 (MQ=60)
                          ATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGT                                                                     <  SRR4302534.4742784/94‑1 (MQ=60)
                          ATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGT                                                                     <  SRR4302534.3225524/94‑1 (MQ=60)
                            TTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTG                                                                   >  SRR4302534.1472693/1‑94 (MQ=60)
                             TGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGC                                                                  >  SRR4302534.6275230/1‑94 (MQ=60)
                               GGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAA                                                                >  SRR4302534.5538957/1‑94 (MQ=60)
                               GGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAA                                                                <  SRR4302534.5762915/94‑1 (MQ=60)
                               GGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAA                                                                >  SRR4302534.1578744/1‑94 (MQ=60)
                                 AAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATA                                                              <  SRR4302534.5232108/94‑1 (MQ=60)
                                 AAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATA                                                              >  SRR4302534.5103350/1‑94 (MQ=60)
                                  AAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAA                                                             <  SRR4302534.1289494/94‑1 (MQ=60)
                                   AGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAA                                                            >  SRR4302534.5771935/1‑94 (MQ=60)
                                     CCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACG                                                          >  SRR4302534.1746426/1‑94 (MQ=60)
                                      CATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGA                                                         >  SRR4302534.2232042/1‑94 (MQ=60)
                                       ATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAA                                                        <  SRR4302534.1965053/94‑1 (MQ=60)
                                       ATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAA                                                        <  SRR4302534.379065/94‑1 (MQ=60)
                                        TTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAG                                                       >  SRR4302534.5294954/1‑94 (MQ=60)
                                         TGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGC                                                      <  SRR4302534.102102/94‑1 (MQ=60)
                                         TGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGC                                                      <  SRR4302534.4340313/94‑1 (MQ=60)
                                           CTGAAACTCATTATCCACTGCGGGGGTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTA                                                    >  SRR4302534.5541356/1‑94 (MQ=60)
                                             GAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAAT                                                  <  SRR4302534.1616448/94‑1 (MQ=60)
                                             GAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAAT                                                  <  SRR4302534.2173095/94‑1 (MQ=60)
                                              AAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTATTG                                                 <  SRR4302534.4868778/94‑1 (MQ=60)
                                              AAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATG                                                 >  SRR4302534.4346321/1‑94 (MQ=60)
                                               AACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGA                                                <  SRR4302534.1816215/94‑1 (MQ=60)
                                                ACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAG                                               <  SRR4302534.4784821/94‑1 (MQ=60)
                                                 CTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGC                                              <  SRR4302534.1696093/94‑1 (MQ=60)
                                                  TCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCC                                             >  SRR4302534.1536835/1‑94 (MQ=60)
                                                  TCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCC                                             >  SRR4302534.3615522/1‑94 (MQ=60)
                                                  TCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCC                                             >  SRR4302534.6576108/1‑94 (MQ=60)
                                                   CATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCT                                            <  SRR4302534.618858/94‑1 (MQ=60)
                                                    ATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTG                                           <  SRR4302534.2401860/94‑1 (MQ=60)
                                                     TTATCCACTACGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGA                                          >  SRR4302534.6457088/1‑94 (MQ=60)
                                                      TATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGAC                                         <  SRR4302534.5244110/94‑1 (MQ=60)
                                                       GTCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACT                                        <  SRR4302534.3291574/94‑1 (MQ=60)
                                                       ATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACT                                        >  SRR4302534.6154072/1‑94 (MQ=60)
                                                       ATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACT                                        <  SRR4302534.3406063/94‑1 (MQ=60)
                                                         CCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTAT                                      >  SRR4302534.5635378/1‑94 (MQ=60)
                                                          CACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATA                                     <  SRR4302534.415442/94‑1 (MQ=60)
                                                          CACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATA                                     >  SRR4302534.4974113/1‑94 (MQ=60)
                                                           CCTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAG                                    <  SRR4302534.3909203/94‑1 (MQ=60)
                                                           ACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAG                                    <  SRR4302534.6597083/94‑1 (MQ=60)
                                                            CTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGG                                   <  SRR4302534.1190136/94‑1 (MQ=60)
                                                            CTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGG                                   <  SRR4302534.2047986/94‑1 (MQ=60)
                                                                GGGGTTCATGGCGCGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAAT                               <  SRR4302534.1455327/94‑1 (MQ=60)
                                                                GGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAAT                               <  SRR4302534.5551559/94‑1 (MQ=60)
                                                                GGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAAT                               <  SRR4302534.4034587/94‑1 (MQ=60)
                                                                GGGGTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAAT                               >  SRR4302534.823852/1‑94 (MQ=60)
                                                                   GTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGTAATAAG                            <  SRR4302534.1857797/94‑1 (MQ=60)
                                                                   GTTCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAG                            <  SRR4302534.1312254/94‑1 (MQ=60)
                                                                     TCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTC                          >  SRR4302534.3221177/1‑94 (MQ=60)
                                                                     TCATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTC                          >  SRR4302534.291845/1‑94 (MQ=60)
                                                                      CATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCT                         >  SRR4302534.4545219/1‑94 (MQ=60)
                                                                      CATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCT                         >  SRR4302534.3835438/1‑94 (MQ=60)
                                                                      CATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCT                         <  SRR4302534.4776566/94‑1 (MQ=60)
                                                                       ATGTCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTT                        <  SRR4302534.2789120/94‑1 (MQ=60)
                                                                       ATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTT                        <  SRR4302534.140552/94‑1 (MQ=60)
                                                                       ATGGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTT                        <  SRR4302534.1914501/94‑1 (MQ=60)
                                                                         TGCACGTGTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGT                      <  SRR4302534.1347027/94‑1 (MQ=60)
                                                                         GGCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGT                      >  SRR4302534.5872597/1‑94 (MQ=60)
                                                                          GCACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTC                     >  SRR4302534.885882/1‑94 (MQ=60)
                                                                           CACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCA                    <  SRR4302534.3865989/94‑1 (MQ=60)
                                                                            ACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAG                   <  SRR4302534.986800/94‑1 (MQ=60)
                                                                            ACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAG                   <  SRR4302534.2384531/94‑1 (MQ=60)
                                                                            ACGTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAG                   <  SRR4302534.1465345/94‑1 (MQ=60)
                                                                              GTTTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGC                 >  SRR4302534.5306048/1‑94 (MQ=60)
                                                                                TTTCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCAT               <  SRR4302534.718083/94‑1 (MQ=60)
                                                                                  TCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAG             <  SRR4302534.5255749/94‑1 (MQ=60)
                                                                                  TCGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAG             <  SRR4302534.3075945/94‑1 (MQ=60)
                                                                                   CGTTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGACTGACTATAGGAAATAAGTCTTGTCATGCATAGA            >  SRR4302534.5654872/1‑94 (MQ=60)
                                                                                   CGCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGA            >  SRR4302534.5792457/1‑94 (MQ=60)
                                                                                    GCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAG           >  SRR4302534.5208773/1‑94 (MQ=60)
                                                                                    GCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAG           <  SRR4302534.2386153/94‑1 (MQ=60)
                                                                                    GCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAG           >  SRR4302534.3271811/1‑94 (MQ=60)
                                                                                    GCTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAG           <  SRR4302534.1901286/94‑1 (MQ=60)
                                                                                     CTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGA          >  SRR4302534.3354409/1‑94 (MQ=60)
                                                                                     CTCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGA          >  SRR4302534.4604206/1‑94 (MQ=60)
                                                                                      TCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGAC         <  SRR4302534.2861509/94‑1 (MQ=60)
                                                                                      TCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGAC         <  SRR4302534.2684294/94‑1 (MQ=60)
                                                                                      TCTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGAC         <  SRR4302534.5023963/94‑1 (MQ=60)
                                                                                       CTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACA        <  SRR4302534.6288879/94‑1 (MQ=60)
                                                                                       CTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACA        >  SRR4302534.6281079/1‑94 (MQ=60)
                                                                                       CTGTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACA        >  SRR4302534.785436/1‑94 (MQ=60)
                                                                                        TGTGAGATGTATTTTTATTGATACATTTGTGTTGCAATAAACGAAGCTAATGACTTTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACAT       <  SRR4302534.1834592/94‑1 (MQ=60)
                                                                                         GTGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATA      <  SRR4302534.4240512/94‑1 (MQ=60)
                                                                                          TGAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATAA     >  SRR4302534.503040/1‑94 (MQ=60)
                                                                                           GAGATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATAAG    >  SRR4302534.3324807/1‑94 (MQ=60)
                                                                                             GATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATAAGCG  >  SRR4302534.751837/1‑94 (MQ=60)
                                                                                             |                                                                                             
CGGTAAAATTTCCGCATACCTGATTGATTTGGGAAAGCCATTGCTGAAACTCATTATCCACTGCGGGGTTCATGGCACGTTTTCGCTCTGTGAAATGTATTTTTATTGTTGCATTTGTGTTGCAATAAACGAAGCTAATGAGCCTGACTATAGGAAATAAGTCTTGTCAGGCATAGAGACATAAGCG  >  NC_000913/1445235‑1445421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑