Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,506,198 G→A G479E (GGG→GAG)  ydcP → putative collagenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,506,1980GA99.6% 963.5 / ‑5.0 250G479E (GGG→GAG) ydcPputative collagenase
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (130/119);  total (130/120)
Fisher's exact test for biased strand distribution p-value = 4.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01

Only 100 of 252 total aligned reads displayed.

GCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGGGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTG  >  NC_000913/1506108‑1506287
                                                                                          |                                                                                         
gCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGc                                                                                         <  2:6372011/93‑1 (MQ=255)
 cATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCa                                                                                        >  1:5901511/1‑93 (MQ=255)
  ctCACACATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCaa                                                                                       <  2:2566408/92‑1 (MQ=255)
  aTCACGCATCCGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGACCAATCTGAAGGATAGTCTGGCAAAACTGGAGCaa                                                                                       <  1:2485565/93‑1 (MQ=255)
        cATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCctc                                                                                 >  2:476289/1‑93 (MQ=255)
        cATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCctc                                                                                 >  2:4545475/1‑93 (MQ=255)
        cATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATCAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCctc                                                                                 >  1:4539958/1‑93 (MQ=255)
         aTACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCctct                                                                                <  1:6440160/93‑1 (MQ=255)
          tACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTa                                                                               <  1:2282745/93‑1 (MQ=255)
          tACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTa                                                                               <  2:2114576/93‑1 (MQ=255)
           aCGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAt                                                                              <  2:1043422/93‑1 (MQ=255)
           aCGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAt                                                                              <  2:4611768/93‑1 (MQ=255)
           aCGCTGGACAGGCAGTACGACGAAGCCAATAACGCCGAAAAAGCAATGAGCAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAt                                                                              <  2:5597231/93‑1 (MQ=255)
            cGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAtt                                                                             <  2:3215382/93‑1 (MQ=255)
             cggggACGGGCAGTTCGAGGAAGCCAATAACCCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTa                                                                            <  1:2079414/90‑1 (MQ=255)
               tGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGGAAAACTGGAGCAAACCCTCTATTACg                                                                          >  2:2779854/1‑93 (MQ=255)
               tGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACg                                                                          >  2:4388240/1‑93 (MQ=255)
               tGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACg                                                                          >  1:1167117/1‑93 (MQ=255)
                 gACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGcc                                                                        <  1:2150499/93‑1 (MQ=255)
                 gACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGcc                                                                        >  2:5504510/1‑93 (MQ=255)
                  aCGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGccc                                                                       <  2:1197646/93‑1 (MQ=255)
                  aCGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGccc                                                                       <  1:1703933/93‑1 (MQ=255)
                   cGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCcg                                                                      >  1:1001167/1‑93 (MQ=255)
                    gggCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCcgc                                                                     >  1:4992448/1‑93 (MQ=255)
                    gggCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCcgc                                                                     <  2:802995/93‑1 (MQ=255)
                     ggCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCcgcg                                                                    >  2:3334779/1‑93 (MQ=255)
                      gCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGa                                                                   >  1:5843280/1‑93 (MQ=255)
                         gTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGAtgt                                                                >  2:3453039/1‑93 (MQ=255)
                           tCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGc                                                              <  2:754936/93‑1 (MQ=255)
                            cgacgaAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCa                                                             <  2:5702723/93‑1 (MQ=255)
                              acgaAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCaaa                                                           >  2:1005084/1‑93 (MQ=255)
                               cgaAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaat                                                          >  2:4073004/1‑93 (MQ=255)
                                gaAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaatt                                                         >  1:3506475/1‑93 (MQ=255)
                                gaAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGGGCAaatt                                                         >  2:4121873/1‑93 (MQ=255)
                                  aGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaattaa                                                       >  1:4831371/1‑93 (MQ=255)
                                  aGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaattaa                                                       >  2:5653608/1‑93 (MQ=255)
                                   gCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaattaat                                                      >  1:3075934/1‑93 (MQ=255)
                                    ccAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaattaatt                                                     <  1:6247257/93‑1 (MQ=255)
                                    ccAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAaattaatt                                                     >  1:2638917/1‑93 (MQ=255)
                                     cAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAttt                                                    <  1:2987414/93‑1 (MQ=255)
                                     cAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAttt                                                    >  2:2466225/1‑93 (MQ=255)
                                     cAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAttt                                                    >  2:1890853/1‑93 (MQ=255)
                                     cAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAttt                                                    >  1:3124177/1‑93 (MQ=255)
                                       aTAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGc                                                  >  1:1425277/1‑93 (MQ=255)
                                       aTAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGc                                                  >  2:3970098/1‑93 (MQ=255)
                                       aTAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGc                                                  <  2:4605161/93‑1 (MQ=255)
                                         aaCGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCg                                                <  2:1518825/93‑1 (MQ=255)
                                         aaCGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCg                                                <  1:1937845/93‑1 (MQ=255)
                                         aaCGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTCGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCg                                                <  2:4462143/93‑1 (MQ=255)
                                          aCGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCgg                                               >  2:3414720/1‑93 (MQ=255)
                                           cGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCggg                                              <  2:1405071/93‑1 (MQ=255)
                                           cGCCGAAAAAGCAATGAACAATCTGAAGCATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCggg                                              <  1:5668158/93‑1 (MQ=255)
                                            gCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCgggg                                             >  1:3894884/1‑93 (MQ=255)
                                              cGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgc                                           >  1:6342029/1‑93 (MQ=255)
                                              cGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgc                                           <  1:5289667/93‑1 (MQ=255)
                                              cGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgc                                           <  2:3361196/93‑1 (MQ=255)
                                              cGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgc                                           >  1:1386763/1‑93 (MQ=255)
                                              cGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgc                                           <  1:1536382/93‑1 (MQ=255)
                                                aaaaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgcgc                                         <  1:5476216/93‑1 (MQ=255)
                                                aaaaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgcgc                                         <  2:3494550/93‑1 (MQ=255)
                                                aaaaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgcgc                                         >  2:3012114/1‑93 (MQ=255)
                                                aaaaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGgcgc                                         <  2:52723/93‑1 (MQ=255)
                                                 aaaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCt                                        >  2:1900219/1‑93 (MQ=255)
                                                 aaaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCt                                        <  1:2878979/93‑1 (MQ=255)
                                                  aaaGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTg                                       <  1:4457849/93‑1 (MQ=255)
                                                    aGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGtt                                     <  1:2287363/93‑1 (MQ=255)
                                                     gCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGttt                                    >  1:3720952/1‑93 (MQ=255)
                                                       aaTGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGt                                  >  2:2192495/1‑93 (MQ=255)
                                                        aTGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTa                                 >  2:1751689/1‑93 (MQ=255)
                                                        aTGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTa                                 >  1:1863699/1‑93 (MQ=255)
                                                           aaCAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCa                              >  2:6440274/1‑93 (MQ=255)
                                                           aaCAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCa                              >  1:3374573/1‑93 (MQ=255)
                                                           aaCAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAATTGCCGGGGGCGCTGTTTGTACCa                              >  2:1284363/1‑93 (MQ=255)
                                                            aCAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTTCCGGGGGCGCTGTTTGTACCaa                             >  1:611161/1‑93 (MQ=255)
                                                            aCAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCaa                             >  2:3175046/1‑93 (MQ=255)
                                                             cAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCaaa                            <  1:2413267/93‑1 (MQ=255)
                                                                tCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAg                         >  2:901890/1‑93 (MQ=255)
                                                                tCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAg                         >  1:4125599/1‑93 (MQ=255)
                                                                tCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAg                         <  2:3784667/93‑1 (MQ=255)
                                                                  tGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTc                       <  1:4008235/93‑1 (MQ=255)
                                                                   gAAGGATGGCCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCt                      >  1:4294868/1‑93 (MQ=255)
                                                                     aGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGt                    >  1:760758/1‑93 (MQ=255)
                                                                     aGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGt                    <  1:282546/93‑1 (MQ=255)
                                                                      ggATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGtt                   <  2:4323710/93‑1 (MQ=255)
                                                                      ggATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGtt                   <  1:1661258/93‑1 (MQ=255)
                                                                        aTGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTaa                 <  1:470894/93‑1 (MQ=255)
                                                                         tagTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTaaa                <  1:3160976/91‑1 (MQ=255)
                                                                         tGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGCTTGTACCAAACAGTCTGTTaaa                >  1:5609905/1‑93 (MQ=255)
                                                                           gTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAAcc              >  1:1595104/1‑93 (MQ=255)
                                                                            tCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCa             <  1:6397358/93‑1 (MQ=255)
                                                                             cTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAg            <  2:513746/93‑1 (MQ=255)
                                                                             cTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAg            >  1:4925059/1‑93 (MQ=255)
                                                                             cTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAg            >  1:5654128/1‑93 (MQ=255)
                                                                                gCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTc         >  1:2679767/1‑93 (MQ=255)
                                                                                  aaaaCTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTccg       <  1:4767934/93‑1 (MQ=255)
                                                                                  aaaaCTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTccg       >  1:436034/1‑93 (MQ=255)
                                                                                  aaaaCTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTccg       >  2:6168607/1‑93 (MQ=255)
                                                                                   aaaCTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTccgc      >  2:4929241/1‑93 (MQ=255)
                                                                                    aaCTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTccgcc     >  1:5373399/1‑93 (MQ=255)
                                                                                       tGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTg  >  2:6058659/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGGGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTG  >  NC_000913/1506108‑1506287

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGGGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGAAGC  >  NC_000913/1506105‑1506291
                                                                                             |                                                                                             
TCAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGA                                                                                               <  SRR4302534.3785344/94‑1 (MQ=60)
TCAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGA                                                                                               <  SRR4302534.950054/94‑1 (MQ=60)
TCAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGA                                                                                               <  SRR4302534.4091354/94‑1 (MQ=60)
TCAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGA                                                                                               <  SRR4302534.2692231/94‑1 (MQ=60)
 CAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAG                                                                                              <  SRR4302534.5343736/94‑1 (MQ=60)
  AGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGC                                                                                             <  SRR4302534.1153457/94‑1 (MQ=60)
   GCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCA                                                                                            >  SRR4302534.6061746/1‑94 (MQ=60)
     ATCACGCATCCGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGACCAATCTGAAGGATAGTCTGGCAAAACTGGAGCAAA                                                                                          <  SRR4302534.2551596/94‑1 (MQ=60)
       CACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACC                                                                                        >  SRR4302534.314811/1‑94 (MQ=60)
       CACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACC                                                                                        <  SRR4302534.2721379/94‑1 (MQ=60)
          GCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTC                                                                                     <  SRR4302534.252993/94‑1 (MQ=60)
          GCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATCAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTC                                                                                     >  SRR4302534.4663022/1‑94 (MQ=60)
           CATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCT                                                                                    >  SRR4302534.5134663/1‑94 (MQ=60)
            ATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTA                                                                                   <  SRR4302534.6052401/94‑1 (MQ=60)
            ATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTA                                                                                   <  SRR4302534.6613724/94‑1 (MQ=60)
             TACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAT                                                                                  <  SRR4302534.2343318/94‑1 (MQ=60)
             TACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAT                                                                                  <  SRR4302534.2834933/94‑1 (MQ=60)
             TACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAT                                                                                  >  SRR4302534.5850203/1‑94 (MQ=60)
             TACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTAT                                                                                  <  SRR4302534.6646354/94‑1 (MQ=60)
              ACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATT                                                                                 >  SRR4302534.5441092/1‑94 (MQ=60)
               CGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTA                                                                                >  SRR4302534.727262/1‑94 (MQ=60)
               CGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTA                                                                                >  SRR4302534.1577821/1‑94 (MQ=60)
               CGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTA                                                                                >  SRR4302534.4945202/1‑94 (MQ=60)
                cggGGACGGGCAGTTCGAGGAAGCCAATAACCCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTAC                                                                               <  SRR4302534.2133870/91‑1 (MQ=60)
                GCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTAC                                                                               <  SRR4302534.4020980/94‑1 (MQ=60)
                 CTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACG                                                                              >  SRR4302534.1197772/1‑94 (MQ=60)
                  TGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGC                                                                             >  SRR4302534.3459346/1‑94 (MQ=60)
                  TGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGC                                                                             >  SRR4302534.1293193/1‑94 (MQ=60)
                   GGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCC                                                                            >  SRR4302534.1442253/1‑94 (MQ=60)
                    GACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCC                                                                           <  SRR4302534.2207263/94‑1 (MQ=60)
                     ACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCG                                                                          >  SRR4302534.1026830/1‑94 (MQ=60)
                     ACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCG                                                                          <  SRR4302534.1748205/94‑1 (MQ=60)
                      CGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGC                                                                         >  SRR4302534.5127491/1‑94 (MQ=60)
                      CGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGC                                                                         >  SRR4302534.63978/1‑94 (MQ=60)
                       GGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCG                                                                        >  SRR4302534.186719/1‑94 (MQ=60)
                        GGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGA                                                                       <  SRR4302534.2341103/94‑1 (MQ=60)
                        GGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGA                                                                       >  SRR4302534.577773/1‑94 (MQ=60)
                        GGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGA                                                                       >  SRR4302534.6001914/1‑94 (MQ=60)
                             TTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGC                                                                  >  SRR4302534.1462816/1‑94 (MQ=60)
                              TCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCA                                                                 <  SRR4302534.1675382/94‑1 (MQ=60)
                               CGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAA                                                                <  SRR4302534.4652204/94‑1 (MQ=60)
                               CGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAA                                                                >  SRR4302534.1848438/1‑94 (MQ=60)
                                 ACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACACCCGCGATGTGCAAAT                                                              >  SRR4302534.209377/1‑94 (MQ=60)
                                  CGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATT                                                             >  SRR4302534.3600800/1‑94 (MQ=60)
                                    AAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAA                                                           >  SRR4302534.4962447/1‑94 (MQ=60)
                                    AAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAA                                                           >  SRR4302534.1668879/1‑94 (MQ=60)
                                     AGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAATTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAT                                                          <  SRR4302534.5388505/94‑1 (MQ=60)
                                     AGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAAT                                                          >  SRR4302534.3156736/1‑94 (MQ=60)
                                      GCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATT                                                         >  SRR4302534.2708721/1‑94 (MQ=60)
                                       CCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTT                                                        <  SRR4302534.4769681/94‑1 (MQ=60)
                                       CCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTT                                                        <  SRR4302534.6416690/94‑1 (MQ=60)
                                       CCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTT                                                        >  SRR4302534.3206313/1‑94 (MQ=60)
                                       CCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTT                                                        >  SRR4302534.3165913/1‑94 (MQ=60)
                                        CAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTG                                                       <  SRR4302534.3065535/94‑1 (MQ=60)
                                        CAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTG                                                       >  SRR4302534.4473051/1‑94 (MQ=60)
                                         AATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGC                                                      >  SRR4302534.1231675/1‑94 (MQ=60)
                                         AATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGC                                                      >  SRR4302534.1462766/1‑94 (MQ=60)
                                         AATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGC                                                      >  SRR4302534.5783763/1‑94 (MQ=60)
                                         AATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGC                                                      >  SRR4302534.2145710/1‑94 (MQ=60)
                                         AATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGC                                                      >  SRR4302534.6567530/1‑94 (MQ=60)
                                           TAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCG                                                    <  SRR4302534.2915415/94‑1 (MQ=60)
                                            AACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGG                                                   >  SRR4302534.4411584/1‑94 (MQ=60)
                                            AACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGG                                                   <  SRR4302534.2352629/94‑1 (MQ=60)
                                            AACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGG                                                   <  SRR4302534.1988515/94‑1 (MQ=60)
                                              CGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGG                                                 >  SRR4302534.3841983/1‑94 (MQ=60)
                                              CGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGG                                                 >  SRR4302534.3999418/1‑94 (MQ=60)
                                              CGCCGAAAAAGCAATGAACAATCTGAAGCATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGG                                                 <  SRR4302534.5821611/94‑1 (MQ=60)
                                                CCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGC                                               >  SRR4302534.4532137/1‑94 (MQ=60)
                                                CCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGC                                               >  SRR4302534.6513312/1‑94 (MQ=60)
                                                CCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGC                                               >  SRR4302534.1423257/1‑94 (MQ=60)
                                                 CGAAAAAGCAATGAACAATCTGAAGTATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCG                                              >  SRR4302534.437936/1‑94 (MQ=60)
                                                 CGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCG                                              <  SRR4302534.5432451/94‑1 (MQ=60)
                                                 CGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCG                                              >  SRR4302534.2214559/1‑94 (MQ=60)
                                                 CGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCG                                              >  SRR4302534.3163203/1‑94 (MQ=60)
                                                 CGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCG                                              >  SRR4302534.1933699/1‑94 (MQ=60)
                                                 CGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCG                                              <  SRR4302534.1576675/94‑1 (MQ=60)
                                                  GAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGC                                             >  SRR4302534.3284465/1‑94 (MQ=60)
                                                   GAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAAATGGAGCAAACCCTCTATTACGCACGAGATGTGTAAATTAATTTGCCGGGGGAGCT                                            >  SRR4302534.1113867/1‑94 (MQ=60)
                                                   AAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCT                                            <  SRR4302534.5623882/94‑1 (MQ=60)
                                                   AAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCT                                            <  SRR4302534.4643592/94‑1 (MQ=60)
                                                   AAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCT                                            <  SRR4302534.2021811/94‑1 (MQ=60)
                                                   AAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCT                                            <  SRR4302534.4852615/94‑1 (MQ=60)
                                                   AAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCT                                            <  SRR4302534.2346035/94‑1 (MQ=60)
                                                    AAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTG                                           <  SRR4302534.2954543/94‑1 (MQ=60)
                                                     AAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGT                                          <  SRR4302534.4578363/94‑1 (MQ=60)
                                                      AAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTT                                         >  SRR4302534.2584132/1‑94 (MQ=60)
                                                      AAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTT                                         <  SRR4302534.278949/94‑1 (MQ=60)
                                                       AGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTT                                        <  SRR4302534.4199115/94‑1 (MQ=60)
                                                       AGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTT                                        <  SRR4302534.2348063/94‑1 (MQ=60)
                                                       AGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTT                                        >  SRR4302534.3820972/1‑94 (MQ=60)
                                                        GCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTG                                       <  SRR4302534.951184/94‑1 (MQ=60)
                                                         CAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGT                                      >  SRR4302534.1045121/1‑94 (MQ=60)
                                                         CAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGT                                      <  SRR4302534.3806665/94‑1 (MQ=60)
                                                          AATGAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTA                                     >  SRR4302534.1912208/1‑94 (MQ=60)
                                                             GAACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCA                                  >  SRR4302534.3465002/1‑94 (MQ=60)
                                                              AACAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTTCCGGGGGCGCTGTTTGTACCAA                                 >  SRR4302534.626012/1‑94 (MQ=60)
                                                                CAATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAAC                               <  SRR4302534.2477446/94‑1 (MQ=60)
                                                                 AATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGAGGGCGCTGTTTTTACCATACA                              >  SRR4302534.5676202/1‑94 (MQ=60)
                                                                  ATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAG                             <  SRR4302534.2423246/94‑1 (MQ=60)
                                                                  ATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAG                             <  SRR4302534.3825745/94‑1 (MQ=60)
                                                                  ATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAG                             >  SRR4302534.4236658/1‑94 (MQ=60)
                                                                  ATCTGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAG                             <  SRR4302534.5570299/94‑1 (MQ=60)
                                                                     TGAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCA                          <  SRR4302534.4115564/94‑1 (MQ=60)
                                                                     TGAAGGATGGCCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCT                          >  SRR4302534.4411242/1‑94 (MQ=60)
                                                                      GAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTG                         <  SRR4302534.6439196/94‑1 (MQ=60)
                                                                      GAAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTG                         <  SRR4302534.3560321/94‑1 (MQ=60)
                                                                       AAGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGT                        >  SRR4302534.779642/1‑94 (MQ=60)
                                                                        AGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTT                       >  SRR4302534.5007706/1‑94 (MQ=60)
                                                                        AGGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTT                       <  SRR4302534.289844/94‑1 (MQ=60)
                                                                         GGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTA                      >  SRR4302534.1732245/1‑94 (MQ=60)
                                                                         GGATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTA                      <  SRR4302534.1704529/94‑1 (MQ=60)
                                                                           ATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAA                    <  SRR4302534.4842333/94‑1 (MQ=60)
                                                                           ATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAA                    <  SRR4302534.482756/94‑1 (MQ=60)
                                                                           ATGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGCTTGTACCAAACAGTCTGTTAAA                    >  SRR4302534.5761667/1‑94 (MQ=60)
                                                                            TGGTCTGGCAAAACTGGAGCAAGCCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAAC                   <  SRR4302534.5021254/94‑1 (MQ=60)
                                                                            TGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAAC                   <  SRR4302534.6471137/94‑1 (MQ=60)
                                                                            TGGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAAC                   >  SRR4302534.5104621/1‑94 (MQ=60)
                                                                            TGGCCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAAC                   >  SRR4302534.6196687/1‑94 (MQ=60)
                                                                            TAGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAAC                   <  SRR4302534.3244262/94‑1 (MQ=60)
                                                                             GGTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACC                  >  SRR4302534.1636791/1‑94 (MQ=60)
                                                                              GTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCA                 <  SRR4302534.5608410/94‑1 (MQ=60)
                                                                              GTCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCA                 <  SRR4302534.6542741/94‑1 (MQ=60)
                                                                               TCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAG                <  SRR4302534.6570119/94‑1 (MQ=60)
                                                                               TCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAG                >  SRR4302534.5058534/1‑94 (MQ=60)
                                                                               TCTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAG                >  SRR4302534.5807180/1‑94 (MQ=60)
                                                                                CTGGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGT               >  SRR4302534.4195272/1‑94 (MQ=60)
                                                                                  GGCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTC             >  SRR4302534.2750607/1‑94 (MQ=60)
                                                                                   GCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCC            <  SRR4302534.3236474/94‑1 (MQ=60)
                                                                                   GCAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCC            <  SRR4302534.3501716/94‑1 (MQ=60)
                                                                                    CAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCG           <  SRR4302534.579709/94‑1 (MQ=60)
                                                                                    CAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCG           >  SRR4302534.2609074/1‑94 (MQ=60)
                                                                                    CAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCG           >  SRR4302534.447149/1‑94 (MQ=60)
                                                                                    CAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCG           >  SRR4302534.1469397/1‑94 (MQ=60)
                                                                                    CAAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCG           >  SRR4302534.5973225/1‑94 (MQ=60)
                                                                                     AAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGC          <  SRR4302534.2999510/94‑1 (MQ=60)
                                                                                     AAAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGC          <  SRR4302534.4897390/94‑1 (MQ=60)
                                                                                      AAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCC         >  SRR4302534.3005502/1‑94 (MQ=60)
                                                                                      AAACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCC         >  SRR4302534.5518198/1‑94 (MQ=60)
                                                                                       AACTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCG        <  SRR4302534.6597155/94‑1 (MQ=60)
                                                                                         CTGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTG      >  SRR4302534.6255504/1‑94 (MQ=60)
                                                                                          TGGAGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGA     >  SRR4302534.945977/1‑94 (MQ=60)
                                                                                          TGGAGCAAACCCTCTATTACGCCCGCGATATGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGA     >  SRR4302534.6541946/1‑94 (MQ=60)
                                                                                            GAGCAACCCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGAAG   <  SRR4302534.2091955/94‑1 (MQ=60)
                                                                                             AGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGAAGC  >  SRR4302534.6076382/1‑94 (MQ=60)
                                                                                             |                                                                                             
TCAGCATCACGCATACGCTGGACGGGCAGTTCGACGAAGCCAATAACGCCGAAAAAGCAATGAACAATCTGAAGGATGGTCTGGCAAAACTGGGGCAAACCCTCTATTACGCCCGCGATGTGCAAATTAATTTGCCGGGGGCGCTGTTTGTACCAAACAGTCTGTTAAACCAGTTCCGCCGTGAAGC  >  NC_000913/1506105‑1506291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑