Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,535,053	A→G	V94A (GTC→GCC)	narW ←	cryptic nitrate reductase 2 delta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,535,053	0	A	G	100.0%	866.8 / NA	252	V94A (GTC→GCC)	narW	cryptic nitrate reductase 2 delta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (139/113); total (139/113)

Only 100 of 265 total aligned reads displayed.

TCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGACCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTG  >  NC_000913/1534963‑1535142

tcttTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAggccggcc                                                                                         <  1:4105695/93‑1 (MQ=255)

 cttTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCt                                                                                        <  2:5517567/93‑1 (MQ=255)

  tttCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCtt                                                                                       >  1:1261075/1‑93 (MQ=255)

  tttCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCtt                                                                                       >  1:6345460/1‑93 (MQ=255)

   ttCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCttt                                                                                      <  2:4503199/93‑1 (MQ=255)

    tCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCtttt                                                                                     <  1:2120687/93‑1 (MQ=255)

       ccTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCAt                                                                                  <  2:2755732/93‑1 (MQ=255)

        cTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATa                                                                                 >  2:5319686/1‑93 (MQ=255)

         tGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATAc                                                                                >  2:2922300/1‑93 (MQ=255)

         tGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATAc                                                                                <  1:654600/93‑1 (MQ=255)

          gATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACt                                                                               <  2:900339/93‑1 (MQ=255)

           aTCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTc                                                                              >  2:5331232/1‑93 (MQ=255)

           aTCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTc                                                                              >  2:2385637/1‑93 (MQ=255)

           aTCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGACTTTTCATACTc                                                                              >  2:6025175/1‑93 (MQ=255)

            tCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTcc                                                                             >  2:3170626/1‑93 (MQ=255)

              gTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGc                                                                           <  2:4388490/93‑1 (MQ=255)

              gTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGc                                                                           >  2:4031129/1‑93 (MQ=255)

                cAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCca                                                                         <  2:1015372/93‑1 (MQ=255)

                cAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCca                                                                         <  1:5389549/93‑1 (MQ=255)

                   gCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCcagca                                                                      <  2:1261230/93‑1 (MQ=255)

                     aGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAgg                                                                    >  2:3518163/1‑93 (MQ=255)

                     aGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAgg                                                                    >  1:1201737/1‑93 (MQ=255)

                      gTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGt                                                                   >  1:1713617/1‑93 (MQ=255)

                        aCGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTcc                                                                 <  1:4772961/93‑1 (MQ=255)

                         cGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTcca                                                                <  1:3139940/93‑1 (MQ=255)

                             tAAATCCTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAt                                                            <  1:2230491/93‑1 (MQ=255)

                             tAAATCCTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAt                                                            <  1:3362877/93‑1 (MQ=255)

                             tAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAt                                                            <  2:1821857/93‑1 (MQ=255)

                             tAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAt                                                            <  1:692680/93‑1 (MQ=255)

                              aaaTACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAtt                                                           <  1:4529741/93‑1 (MQ=255)

                              aaaTACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAtt                                                           <  2:3090281/93‑1 (MQ=255)

                              aaaTACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAtt                                                           <  1:5124052/93‑1 (MQ=255)

                              aaaTACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAtt                                                           >  1:387963/1‑93 (MQ=255)

                               aaTACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTg                                                          >  2:561110/1‑93 (MQ=255)

                                 accTCCAGATGCAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGcc                                                        <  2:2136679/91‑1 (MQ=255)

                                   cTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTg                                                      <  1:2562755/93‑1 (MQ=255)

                                   cTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTg                                                      <  2:132088/93‑1 (MQ=255)

                                      cAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGcc                                                   >  2:1351394/1‑93 (MQ=255)

                                       aGATACAGCGGTAGATAATCCGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGccc                                                  >  1:5251803/1‑92 (MQ=255)

                                        gATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCcgc                                                 >  2:1948722/1‑93 (MQ=255)

                                         aTACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCcgcg                                                >  2:2506461/1‑93 (MQ=255)

                                          tACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGa                                               >  2:6300573/1‑93 (MQ=255)

                                           aCAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGAt                                              <  1:3835940/93‑1 (MQ=255)

                                            cAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATc                                             >  1:4368136/1‑93 (MQ=255)

                                            aaGCGGTAGATAATCGGGCAGTGCCCGACAACCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATc                                             <  2:1601898/92‑1 (MQ=38)

                                             aGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGTTCCACCATTGCCTGGCCGCGATcg                                            >  2:6433010/1‑93 (MQ=255)

                                             aGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATcg                                            >  1:3463756/1‑93 (MQ=255)

                                              gCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATcgc                                           >  2:3406050/1‑93 (MQ=255)

                                              gCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATcgc                                           <  1:6031736/93‑1 (MQ=255)

                                              gCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATcgc                                           >  2:2145910/1‑93 (MQ=255)

                                               cGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATcgcg                                          <  1:2013242/93‑1 (MQ=255)

                                                ggTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCgg                                         <  2:1583096/93‑1 (MQ=255)

                                                 gTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCggg                                        >  2:3692939/1‑93 (MQ=255)

                                                 gTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCggg                                        <  2:4973437/93‑1 (MQ=255)

                                                  tAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGa                                       >  1:5889916/1‑93 (MQ=255)

                                                   aGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGAc                                      >  1:803533/1‑93 (MQ=255)

                                                   aGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGAc                                      <  1:1821066/93‑1 (MQ=255)

                                                   aGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGAc                                      >  1:1538307/1‑93 (MQ=255)

                                                    gATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACt                                     <  2:1568171/93‑1 (MQ=255)

                                                    gATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACt                                     >  2:2564497/1‑93 (MQ=255)

                                                    gATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACt                                     <  2:395976/93‑1 (MQ=255)

                                                    aaTAATCGGGCAGTTCCCGACAATCCAGCTGCAGTCCGGCCTTTTCATCCTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACt                                     <  1:2622291/92‑1 (MQ=38)

                                                      tAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCg                                   <  1:428723/93‑1 (MQ=255)

                                                      tAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCg                                   <  1:5331232/93‑1 (MQ=255)

                                                      tAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCg                                   <  1:6401077/93‑1 (MQ=255)

                                                      tAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATAATCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCg                                   <  1:46482/93‑1 (MQ=255)

                                                       aaTCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCgg                                  >  1:6271780/1‑93 (MQ=255)

                                                       aaTCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCgg                                  <  1:3076510/93‑1 (MQ=255)

                                                        aTCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCTCGATCGCGGGACTCGGc                                 >  1:2680077/1‑93 (MQ=255)

                                                        aTCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGc                                 >  1:10379/1‑93 (MQ=255)

                                                        aTCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGc                                 >  2:6069852/1‑93 (MQ=255)

                                                         tCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCa                                >  1:5822469/1‑93 (MQ=255)

                                                          cGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCAt                               <  1:953274/93‑1 (MQ=255)

                                                           gggCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATg                              >  1:2902219/1‑93 (MQ=255)

                                                               aGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACa                          >  2:616078/1‑93 (MQ=255)

                                                                gTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACAt                         >  2:545225/1‑93 (MQ=255)

                                                                 ttCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATg                        >  1:6251517/1‑93 (MQ=255)

                                                                  tCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGt                       >  2:3270029/1‑93 (MQ=255)

                                                                   cccGACAATCCAGCTGCAGGCCGGCCTTTTCATCCTCCGCCAGCAGGTCCCCCAGTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGtt                      <  1:1919583/93‑1 (MQ=255)

                                                                   cccGACAATCCAGCTGCAGGCCGGCCTTTTCATCCTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGtt                      <  1:5474580/93‑1 (MQ=255)

                                                                   cccGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGtt                      <  2:3785743/93‑1 (MQ=255)

                                                                    ccGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTc                     >  2:1712378/1‑93 (MQ=255)

                                                                      gACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGa                   >  1:888418/1‑93 (MQ=255)

                                                                       aCAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGaa                  >  1:1948669/1‑93 (MQ=255)

                                                                         aaTCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAca                >  2:4638016/1‑93 (MQ=255)

                                                                           tCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagc              >  1:4875089/1‑93 (MQ=255)

                                                                             caccTGCAGGCCGGCCTTTTCATACTCCGCAAGCAGGTCCACCATGGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcag            <  2:2631038/90‑1 (MQ=25)

                                                                             cAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcag            >  1:4036549/1‑93 (MQ=255)

                                                                             cAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcag            >  1:5688837/1‑93 (MQ=255)

                                                                             cAGCTGCAGGCCGGCCTTTTCACACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcag            <  1:1873589/93‑1 (MQ=255)

                                                                              aGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcagc           <  2:3741544/93‑1 (MQ=255)

                                                                               gCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcagca          >  1:1066617/1‑93 (MQ=255)

                                                                               gCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcagca          <  1:5043064/93‑1 (MQ=255)

                                                                               gCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcagca          <  2:5142709/93‑1 (MQ=255)

                                                                                cTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAAcagcagcag         <  2:4838593/93‑1 (MQ=255)

                                                                                  gCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCg       >  2:302576/1‑93 (MQ=255)

                                                                                    aGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGCACAGCAGCAGCGAc     >  1:4700055/1‑93 (MQ=255)

                                                                                    aGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGAc     <  1:3687516/93‑1 (MQ=255)

                                                                                      gCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACgt   <  2:5912712/93‑1 (MQ=255)

                                                                                      gCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACgt   <  2:416620/93‑1 (MQ=255)

TCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGACCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTG  >  NC_000913/1534963‑1535142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGACCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGTGC  >  NC_000913/1534960‑1535146

CCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGG                                                                                               >  SRR4302534.5568494/1‑94 (MQ=60)

CCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGCTCCCGACAATCCAGCTGCAGGCCGG                                                                                               <  SRR4302534.6394293/94‑1 (MQ=60)

   TCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCT                                                                                            <  SRR4302534.4216122/94‑1 (MQ=60)

    CTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTT                                                                                           >  SRR4302534.6516835/1‑94 (MQ=60)

    CTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTT                                                                                           >  SRR4302534.1294292/1‑94 (MQ=60)

    CTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTT                                                                                           >  SRR4302534.2684775/1‑94 (MQ=60)

      TTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTT                                                                                         >  SRR4302534.507218/1‑94 (MQ=60)

       TCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTC                                                                                        >  SRR4302534.1069356/1‑94 (MQ=60)

       TCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTC                                                                                        <  SRR4302534.2176512/94‑1 (MQ=60)

       TCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTC                                                                                        >  SRR4302534.2370368/1‑94 (MQ=60)

          CCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATA                                                                                     >  SRR4302534.5589720/1‑94 (MQ=60)

          CCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATA                                                                                     >  SRR4302534.1908230/1‑94 (MQ=60)

           CTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATAC                                                                                    <  SRR4302534.5398500/94‑1 (MQ=60)

            TGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACT                                                                                   <  SRR4302534.670544/94‑1 (MQ=60)

            TGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACT                                                                                   >  SRR4302534.1987367/1‑94 (MQ=60)

             GATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTC                                                                                  >  SRR4302534.176498/1‑94 (MQ=60)

             GATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTC                                                                                  >  SRR4302534.551450/1‑94 (MQ=60)

             GATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTC                                                                                  >  SRR4302534.5737202/1‑94 (MQ=60)

             GATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTC                                                                                  >  SRR4302534.1942823/1‑94 (MQ=60)

              ATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCC                                                                                 <  SRR4302534.6645523/94‑1 (MQ=60)

                CGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGC                                                                               >  SRR4302534.4173581/1‑94 (MQ=60)

                CGTCAGGCAATACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGC                                                                               >  SRR4302534.6435181/1‑94 (MQ=60)

                 GTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCC                                                                              >  SRR4302534.5715864/1‑94 (MQ=60)

                  TCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCA                                                                             <  SRR4302534.1677275/94‑1 (MQ=60)

                   CAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAG                                                                            <  SRR4302534.5534695/94‑1 (MQ=60)

                   CAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAG                                                                            >  SRR4302534.4461489/1‑94 (MQ=60)

                     GGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGGTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCA                                                                          >  SRR4302534.5360565/1‑94 (MQ=60)

                       CAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGG                                                                        >  SRR4302534.1233360/1‑94 (MQ=60)

                        AGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGT                                                                       <  SRR4302534.856656/94‑1 (MQ=60)

                        AGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGT                                                                       >  SRR4302534.1758135/1‑94 (MQ=60)

                          TACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCC                                                                     <  SRR4302534.69960/94‑1 (MQ=60)

                          TACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTACATACTCCGCCAGCAGGTCC                                                                     <  SRR4302534.6471001/94‑1 (MQ=60)

                           ACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCA                                                                    <  SRR4302534.4902549/94‑1 (MQ=60)

                            CGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCAC                                                                   <  SRR4302534.3222520/94‑1 (MQ=60)

                              GTTAAAGACTCCAGATACAGCGGTAGATAATCGGGCAGTCCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCA                                                                 <  SRR4302534.1155889/94‑1 (MQ=60)

                              CTTAAATACGCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTAATACTCCGCCAGCAGGTCCACCA                                                                 >  SRR4302534.6461627/1‑94 (MQ=60)

                               TTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCAT                                                                >  SRR4302534.3816221/1‑94 (MQ=60)

                                TAAATCCTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATT                                                               <  SRR4302534.2289564/94‑1 (MQ=60)

                                TAAATCCTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATT                                                               <  SRR4302534.3452944/94‑1 (MQ=60)

                                TAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATT                                                               <  SRR4302534.709644/94‑1 (MQ=60)

                                TAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATT                                                               >  SRR4302534.397877/1‑94 (MQ=60)

                                TAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATT                                                               <  SRR4302534.5435975/94‑1 (MQ=60)

                                 AAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCTCGACAATCCAGCTGCAGGCCCGCCTTTTCATtatccgccagaatgtccacaaacg                                                              >  SRR4302534.69458/1‑70 (MQ=60)

                                 AAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTG                                                              <  SRR4302534.5262407/94‑1 (MQ=60)

                                 AAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTG                                                              <  SRR4302534.4652470/94‑1 (MQ=60)

                                  AATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGC                                                             >  SRR4302534.5519482/1‑94 (MQ=60)

                                    TACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCT                                                           <  SRR4302534.4626524/94‑1 (MQ=60)

                                     ACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTG                                                          >  SRR4302534.3413479/1‑94 (MQ=60)

                                     ACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTG                                                          >  SRR4302534.2005002/1‑94 (MQ=60)

                                      CTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGG                                                         <  SRR4302534.3989288/94‑1 (MQ=60)

                                      CTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGG                                                         <  SRR4302534.4378916/94‑1 (MQ=60)

                                      CTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGG                                                         <  SRR4302534.2630672/94‑1 (MQ=60)

                                      CTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGG                                                         >  SRR4302534.2576317/1‑94 (MQ=60)

                                      CTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGG                                                         <  SRR4302534.685479/94‑1 (MQ=60)

                                      CTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGG                                                         <  SRR4302534.3866475/94‑1 (MQ=60)

                                       tccagatacagccgtaaagagtcggccatgccgcaACAATCCAGCAGCAGGCCGTCCATTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGC                                                        <  SRR4302534.5024302/59‑1 (MQ=60)

                                         CAGATACAGCGGTAGATAATCGGGCAGTTCCCTACAATCCAGCTGCAGGCCGGCCTTTTCATTCTCCGCCAGCAGGTCCACCATTGCCTGGCCG                                                      <  SRR4302534.920370/94‑1 (MQ=60)

                                         CAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCG                                                      >  SRR4302534.4967791/1‑94 (MQ=60)

                                         CAGATACAGCGGTAGATAATCCGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCC                                                      >  SRR4302534.5393712/1‑94 (MQ=60)

                                          AGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGC                                                     >  SRR4302534.4164453/1‑94 (MQ=60)

                                           GATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGACTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCG                                                    >  SRR4302534.1366134/1‑94 (MQ=60)

                                           AATACAGCGGTGGATAATCGGGCAGTTCCCGCCAATCCAGCTGCAGGCCGGCCGTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCG                                                    <  SRR4302534.6426875/94‑1 (MQ=60)

                                            ATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGA                                                   >  SRR4302534.1934009/1‑94 (MQ=60)

                                            ATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGA                                                   >  SRR4302534.6334350/1‑94 (MQ=60)

                                             TACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGAT                                                  <  SRR4302534.6553551/94‑1 (MQ=60)

                                             TACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGAT                                                  <  SRR4302534.3992444/94‑1 (MQ=60)

                                              gcagcgataaaaAATCGGGCAGTCCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATCCTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATC                                                 <  SRR4302534.6151188/82‑1 (MQ=60)

                                              ACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATC                                                 >  SRR4302534.3618870/1‑94 (MQ=60)

                                              ACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATC                                                 <  SRR4302534.3938960/94‑1 (MQ=60)

                                              ACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATC                                                 >  SRR4302534.4485859/1‑94 (MQ=60)

                                               CAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCG                                                >  SRR4302534.3556878/1‑94 (MQ=60)

                                                AGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGC                                               >  SRR4302534.6191860/1‑94 (MQ=60)

                                                AGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGC                                               >  SRR4302534.3029394/1‑94 (MQ=60)

                                                 GCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCG                                              <  SRR4302534.6195643/94‑1 (MQ=60)

                                                  CGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGG                                             <  SRR4302534.2065916/94‑1 (MQ=60)

                                                   GGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGG                                            <  SRR4302534.5048382/94‑1 (MQ=60)

                                                   GGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGG                                            <  SRR4302534.3455823/94‑1 (MQ=60)

                                                    GTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGA                                           >  SRR4302534.6049842/1‑94 (MQ=60)

                                                     TAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGAC                                          >  SRR4302534.1578639/1‑94 (MQ=60)

                                                     TAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGAC                                          >  SRR4302534.823716/1‑94 (MQ=60)

                                                     TAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGAC                                          >  SRR4302534.835285/1‑94 (MQ=60)

                                                      AGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACT                                         <  SRR4302534.4592848/94‑1 (MQ=60)

                                                      AGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACT                                         <  SRR4302534.1868399/94‑1 (MQ=60)

                                                       GATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTC                                        >  SRR4302534.2847290/1‑94 (MQ=60)

                                                       GATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTC                                        >  SRR4302534.4857708/1‑94 (MQ=60)

                                                       AATAATCGGGCAGTTCCCGACAATCCAGCTGCAGTCCGGCCTTTTCATCCTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTC                                        <  SRR4302534.2691670/94‑1 (MQ=60)

                                                       AATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTC                                        <  SRR4302534.4824829/94‑1 (MQ=60)

                                                        ATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCG                                       >  SRR4302534.4458842/1‑94 (MQ=60)

                                                        ATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCG                                       >  SRR4302534.394965/1‑94 (MQ=60)

                                                         TAATCGGGCATTCCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      <  SRR4302534.6573913/94‑1 (MQ=60)

                                                         TAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      <  SRR4302534.4842254/94‑1 (MQ=60)

                                                         TAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      <  SRR4302534.6573912/94‑1 (MQ=60)

                                                         TAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      >  SRR4302534.6441583/1‑94 (MQ=60)

                                                         TAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      <  SRR4302534.5475019/94‑1 (MQ=60)

                                                         TAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      <  SRR4302534.439667/94‑1 (MQ=60)

                                                         TAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATAATCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGG                                      <  SRR4302534.47725/94‑1 (MQ=60)

                                                          AATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCTCGATCGCGGGACTCGGC                                     >  SRR4302534.2750924/1‑94 (MQ=60)

                                                          AATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGC                                     >  SRR4302534.10643/1‑94 (MQ=60)

                                                          AATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGC                                     <  SRR4302534.3157324/94‑1 (MQ=60)

                                                           ATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCA                                    >  SRR4302534.5980511/1‑94 (MQ=60)

                                                             CGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATG                                  >  SRR4302534.1900680/1‑94 (MQ=60)

                                                             CGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATG                                  >  SRR4302534.2978381/1‑94 (MQ=60)

                                                             CGGGCAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATG                                  <  SRR4302534.977546/94‑1 (MQ=60)

                                                             CGGGCAGTCCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATG                                  <  SRR4302534.1251582/94‑1 (MQ=60)

                                                                 CAGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACA                              >  SRR4302534.1685252/1‑94 (MQ=60)

                                                                  AGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACAT                             >  SRR4302534.1455078/1‑94 (MQ=60)

                                                                  AGTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACAT                             <  SRR4302534.1138704/94‑1 (MQ=60)

                                                                   GTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATG                            >  SRR4302534.6421010/1‑94 (MQ=60)

                                                                   GTTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATG                            <  SRR4302534.2254381/94‑1 (MQ=60)

                                                                    TTCCCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGT                           >  SRR4302534.3159632/1‑94 (MQ=60)

                                                                      CCCGACAATCCAGCTGCAGGCCGGCCTTTTCATCCTCCGCCAGCAGGTCCCCCAGTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTC                         <  SRR4302534.1969770/94‑1 (MQ=60)

                                                                      CCCGACAATCCAGCTGCAGGCCGGCCTTTTCATCCTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTC                         <  SRR4302534.5622191/94‑1 (MQ=60)

                                                                       CCGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCG                        >  SRR4302534.5859579/1‑94 (MQ=60)

                                                                        CGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGA                       <  SRR4302534.2042536/94‑1 (MQ=60)

                                                                        CGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGA                       >  SRR4302534.3530112/1‑94 (MQ=60)

                                                                        CGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGA                       >  SRR4302534.6039050/1‑94 (MQ=60)

                                                                        CGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGA                       >  SRR4302534.2122021/1‑94 (MQ=60)

                                                                        CGACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGA                       >  SRR4302534.910912/1‑94 (MQ=60)

                                                                         GACAATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAA                      >  SRR4302534.1999673/1‑94 (MQ=60)

                                                                            AATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAG                   >  SRR4302534.2124087/1‑94 (MQ=60)

                                                                            AATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAG                   >  SRR4302534.5183063/1‑94 (MQ=60)

                                                                             ATCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGC                  >  SRR4302534.5007311/1‑94 (MQ=60)

                                                                              TCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCA                 <  SRR4302534.4775424/94‑1 (MQ=60)

                                                                              TCCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCA                 <  SRR4302534.5861441/94‑1 (MQ=60)

                                                                               CCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAG                >  SRR4302534.823679/1‑94 (MQ=60)

                                                                               CCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAG                >  SRR4302534.5842912/1‑94 (MQ=60)

                                                                               CCAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAG                >  SRR4302534.4144763/1‑94 (MQ=60)

                                                                                CAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGC               >  SRR4302534.4708506/1‑94 (MQ=60)

                                                                                CAGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGC               >  SRR4302534.3277307/1‑94 (MQ=60)

                                                                                CAGCTGCAGGCCGGCCTTTTCACACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGC               <  SRR4302534.1922348/94‑1 (MQ=60)

                                                                                 ATCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCA              >  SRR4302534.2669561/1‑94 (MQ=60)

                                                                                 AGCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCA              >  SRR4302534.1094266/1‑94 (MQ=60)

                                                                                  GCTGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAG             <  SRR4302534.5179245/94‑1 (MQ=60)

                                                                                    TGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCG           <  SRR4302534.2744147/94‑1 (MQ=60)

                                                                                    TGCAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCG           >  SRR4302534.2793423/1‑94 (MQ=60)

                                                                                      CAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGCACAGCAGCAGCGAC         >  SRR4302534.4827651/1‑94 (MQ=60)

                                                                                      CAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGAC         <  SRR4302534.5234358/94‑1 (MQ=60)

                                                                                      CAGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGAC         >  SRR4302534.3000031/1‑94 (MQ=60)

                                                                                       AGGCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACG        <  SRR4302534.3786666/94‑1 (MQ=60)

                                                                                         GCCGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTG      <  SRR4302534.914256/94‑1 (MQ=60)

                                                                                           CGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGT    >  SRR4302534.3902319/1‑94 (MQ=60)

                                                                                           CGGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGG    >  SRR4302534.1618351/1‑94 (MQ=60)

                                                                                            GGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGTG   >  SRR4302534.4934521/1‑94 (MQ=60)

                                                                                            GGCCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGGTCGAACACGAGCAGCGACGTGGGG   >  SRR4302534.3154910/1‑94 (MQ=60)

                                                                                             GCCTTTTCATACTCCGCCAGCAGGACCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGTGC  >  SRR4302534.3116104/1‑94 (MQ=60)

                                                                                             GCCTTTTCATACTCCGCCAGAAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGTGC  >  SRR4302534.6403638/1‑94 (MQ=60)

CCTTCTTTCGCCTGATCGTCAGGCAGTACGCTTAAATACTCCAGATACAGCGGTAGATAATCGGGCAGTTCCCGACAATCCAGCTGCAGGCCGACCTTTTCATACTCCGCCAGCAGGTCCACCATTGCCTGGCCGCGATCGCGGGACTCGGCATGAACATGTTCGAACAGCAGCAGCGACGTGGTGC  >  NC_000913/1534960‑1535146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`