Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,553,730 |
(G)6→7 |
intergenic (‑10/+120) |
sfcA ← / ← rpsV |
NAD‑linked malate dehydrogenase/30S ribosomal subunit protein S22 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,553,724 | 1 | . | G | 99.3%
| 474.2
/ ‑3.7
| 138 | intergenic (‑4/+126) | sfcA/rpsV | NAD‑linked malate dehydrogenase/30S ribosomal subunit protein S22 |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (75/62); total (75/63) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.09e-01 |
Only 100 of 164 total aligned reads displayed.
AGCAGTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCA > NC_000913/1553632‑1553811
|
agcagTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCt < 2:4652633/93‑1 (MQ=255)
agcagTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCt < 2:979498/93‑1 (MQ=255)
agcagTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCt > 1:6286606/1‑93 (MQ=255)
gcagTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑g < 1:2044218/93‑1 (MQ=255)
gcagTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑g > 2:1249539/1‑93 (MQ=255)
agTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg < 2:2501421/93‑1 (MQ=255)
gTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑g > 1:3325912/1‑93 (MQ=255)
tACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑gg < 1:3960038/93‑1 (MQ=255)
aCAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggg < 2:1354792/93‑1 (MQ=255)
aCAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggg < 2:6030742/93‑1 (MQ=255)
aCAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggg < 2:563119/93‑1 (MQ=255)
aGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggggc > 2:4136301/1‑91 (MQ=255)
gggCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggggct < 2:3766031/93‑4 (MQ=255)
gggCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggggct < 2:773176/93‑4 (MQ=255)
ggCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggggctt > 1:966072/1‑89 (MQ=255)
ggCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑ggg‑ggggctt < 1:1932206/93‑5 (MQ=255)
ccAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCtttt < 2:2350861/93‑1 (MQ=255)
gCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATc < 2:5320218/93‑1 (MQ=255)
tAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTc > 1:4423416/1‑93 (MQ=255)
aaGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCt < 1:168166/93‑1 (MQ=255)
aGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCtt < 1:5056151/93‑1 (MQ=255)
aGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCtt > 2:4965682/1‑93 (MQ=255)
ggATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTg < 2:4640930/93‑1 (MQ=255)
gATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGc < 1:1853032/93‑1 (MQ=255)
gATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGc > 1:3248588/1‑93 (MQ=255)
gATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACCCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGc > 2:5254988/1‑93 (MQ=255)
atatAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCt < 2:6396128/93‑1 (MQ=255)
atatAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCt > 1:2216563/1‑93 (MQ=255)
tataAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCtt > 2:3114372/1‑93 (MQ=255)
ataAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCttt < 2:5467094/93‑1 (MQ=255)
taAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTa > 1:1614371/1‑93 (MQ=255)
taAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTa > 1:992120/1‑93 (MQ=255)
aaGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATGGTCTTTGCTTTAcc > 1:1685123/1‑93 (MQ=255)
aaGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTAcc < 2:5710041/93‑1 (MQ=255)
aaGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTAcc > 1:5684035/1‑93 (MQ=255)
aaGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTAcc < 2:5143301/93‑1 (MQ=255)
aaGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTAcc > 2:3573846/1‑93 (MQ=255)
aGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCg < 2:1463763/93‑1 (MQ=255)
aGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCg < 1:3111188/93‑1 (MQ=255)
aGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCg < 1:3078580/93‑1 (MQ=255)
gCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGc > 1:5106243/1‑93 (MQ=255)
gCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGc < 1:5307513/93‑1 (MQ=255)
cGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGcc > 1:6053226/1‑93 (MQ=255)
gAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCa < 1:5390779/93‑1 (MQ=255)
gAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCa > 2:141835/1‑93 (MQ=255)
gAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCa > 1:4631042/1‑93 (MQ=255)
aaCGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAg < 2:3682357/93‑1 (MQ=255)
aCGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAgg < 1:3649714/93‑1 (MQ=255)
cTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCg > 1:4731407/1‑93 (MQ=255)
cTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCg < 2:1533109/93‑1 (MQ=255)
tGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGt < 1:541235/93‑1 (MQ=255)
tGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGt < 1:1419681/93‑1 (MQ=255)
tGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGt < 2:3973579/93‑1 (MQ=255)
tGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGt < 1:2940311/93‑1 (MQ=255)
ttttgtttttgGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGcc < 1:36183/93‑1 (MQ=255)
ttgtttttgGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGGTGGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTc < 1:1112482/93‑1 (MQ=255)
tttttgGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAg > 1:6450526/1‑93 (MQ=255)
tttttgGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAg < 1:4888462/93‑1 (MQ=255)
tttgGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGta > 1:6308950/1‑93 (MQ=255)
tttgGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGta < 1:5436527/93‑1 (MQ=255)
ggTTCCATGTCACTCACTCTGTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGACGTCGGCCTCAAGTATaa < 1:883984/93‑1 (MQ=255)
gTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATaaa < 2:6238775/93‑1 (MQ=255)
gTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATaaa > 1:112911/1‑93 (MQ=255)
gTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATaaa < 1:4220992/93‑1 (MQ=255)
ttCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCATGGCGTCGGCCTCAAGTATAAAg > 2:4457833/1‑93 (MQ=255)
tCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGc > 2:5639964/1‑93 (MQ=255)
ccATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCa > 2:402800/1‑93 (MQ=255)
cATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAg > 1:1590454/1‑93 (MQ=255)
tGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGAt > 1:1605191/1‑93 (MQ=255)
tGTCACTCACTCTTTTTTAAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGAt < 1:4391357/93‑1 (MQ=255)
gTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATa > 1:2646794/1‑93 (MQ=255)
tcactcacTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaa > 2:5221933/1‑93 (MQ=255)
ccctcactcTTTTTTGAATAGCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaa < 1:606037/91‑1 (MQ=255)
cactcactCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaa < 2:3026600/93‑1 (MQ=255)
actcactcTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaa > 1:2311275/1‑93 (MQ=255)
actcactcTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaa < 2:5943835/93‑1 (MQ=255)
cactcTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaaaca < 1:128973/93‑1 (MQ=255)
cactcTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaaaca > 1:828865/1‑93 (MQ=255)
actcTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaaacaa > 2:1976816/1‑93 (MQ=255)
tctTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaaacaaaa > 2:6212866/1‑93 (MQ=255)
ttttttGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATaaaaacaaaaac < 2:5493501/93‑1 (MQ=255)
tttttGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAaaaacaaaaaca < 1:720665/93‑1 (MQ=255)
tttttGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAaaaacaaaaaca < 1:2645526/93‑1 (MQ=255)
ttGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCa < 2:851479/93‑1 (MQ=255)
ttGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCa < 2:558574/93‑1 (MQ=255)
aaTATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTg > 2:2071494/1‑93 (MQ=255)
atatCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTgc < 1:3763089/93‑1 (MQ=255)
atatCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTgc < 2:1752918/93‑1 (MQ=255)
tatCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTgcg > 1:680905/1‑93 (MQ=255)
atccatccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTgcgc > 2:5867681/1‑93 (MQ=255)
tccatccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCa < 2:4016845/93‑1 (MQ=255)
tccatccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCa < 1:160642/93‑1 (MQ=255)
tccatccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCa > 2:490443/1‑93 (MQ=255)
ccatccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATANAAACAAAAAACTCATTGTGNAg > 2:4418584/1‑93 (MQ=255)
catccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAgg > 1:5208910/1‑93 (MQ=255)
atccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGc < 1:4587637/93‑1 (MQ=255)
tccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCa < 1:6170281/93‑1 (MQ=255)
tccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCa > 1:2567409/1‑93 (MQ=255)
tccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCa > 1:2751664/1‑93 (MQ=255)
tccCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCa > 1:3693079/1‑93 (MQ=255)
|
AGCAGTACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCA > NC_000913/1553632‑1553811
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > NC_000913/1553637‑1553823
|
TACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGG < SRR4302534.2695830/94‑1 (MQ=60)
TACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGG < SRR4302534.4066072/94‑1 (MQ=60)
CAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGGgc > SRR4302534.4310361/1‑92 (MQ=60)
GGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTT > SRR4302534.990691/1‑94 (MQ=60)
GGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTT < SRR4302534.4639254/94‑1 (MQ=60)
GGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTT < SRR4302534.1982725/94‑1 (MQ=60)
GTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTC > SRR4302534.4542845/1‑94 (MQ=60)
TAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCT > SRR4302534.953344/1‑94 (MQ=60)
AAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTT < SRR4302534.172586/94‑1 (MQ=60)
AGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTT < SRR4302534.5192715/94‑1 (MQ=60)
AGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTT > SRR4302534.6561531/1‑94 (MQ=60)
GGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGC > SRR4302534.3335094/1‑94 (MQ=60)
GATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCT < SRR4302534.5550849/94‑1 (MQ=60)
GATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCT > SRR4302534.2275259/1‑94 (MQ=60)
GATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCT < SRR4302534.1901248/94‑1 (MQ=60)
TATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTT < SRR4302534.2979975/94‑1 (MQ=60)
ATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTA < SRR4302534.6049838/94‑1 (MQ=60)
ATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTA > SRR4302534.1017506/1‑94 (MQ=60)
ATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTA > SRR4302534.1656500/1‑94 (MQ=60)
AAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATGGTCTTTGCTTTACC > SRR4302534.1728943/1‑94 (MQ=60)
AAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACC > SRR4302534.5837961/1‑94 (MQ=60)
AGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGC > SRR4302534.5244041/1‑94 (MQ=60)
AGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGC > SRR4302534.5244042/1‑94 (MQ=60)
AGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGC < SRR4302534.3193003/94‑1 (MQ=60)
AGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGC < SRR4302534.3159458/94‑1 (MQ=60)
GCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCC < SRR4302534.5450720/94‑1 (MQ=60)
GCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCC > SRR4302534.6217828/1‑94 (MQ=60)
CGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCA > SRR4302534.4756708/1‑94 (MQ=60)
CGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCA < SRR4302534.3795460/94‑1 (MQ=60)
CGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCA < SRR4302534.6334141/94‑1 (MQ=60)
GAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAG < SRR4302534.5535944/94‑1 (MQ=60)
GAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAG > SRR4302534.3176362/1‑94 (MQ=60)
AACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGG < SRR4302534.1887135/94‑1 (MQ=60)
ACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGG < SRR4302534.3747800/94‑1 (MQ=60)
GCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCG > SRR4302534.4859890/1‑94 (MQ=60)
CTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGT > SRR4302534.3215909/1‑94 (MQ=60)
TGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTC < SRR4302534.3017469/94‑1 (MQ=60)
TGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTC < SRR4302534.1457036/94‑1 (MQ=60)
TGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTC < SRR4302534.554632/94‑1 (MQ=60)
TTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCT < SRR4302534.37140/94‑1 (MQ=60)
TTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTC < SRR4302534.3718547/94‑1 (MQ=60)
TTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGGTGGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCA < SRR4302534.1141520/94‑1 (MQ=60)
TGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAA < SRR4302534.4717500/94‑1 (MQ=60)
TGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAA < SRR4302534.3432258/94‑1 (MQ=60)
GTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAG > SRR4302534.6624358/1‑94 (MQ=60)
TTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGT < SRR4302534.847304/94‑1 (MQ=60)
TTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGT < SRR4302534.5021022/94‑1 (MQ=60)
TTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTA > SRR4302534.6479522/1‑94 (MQ=60)
TTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTAT < SRR4302534.5582931/94‑1 (MQ=60)
TTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATA > SRR4302534.1010633/1‑94 (MQ=60)
TGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGACAGGGCGTCGGCCTCAAGTATAA > SRR4302534.1688612/1‑94 (MQ=60)
TGGTTCCATGTCACTCACTCGTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAA > SRR4302534.6450606/1‑94 (MQ=60)
GGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAA > SRR4302534.115919/1‑94 (MQ=60)
GGTTCCATGTCACTCACTCTGTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGACGTCGGCCTCAAGTATAAA < SRR4302534.906351/94‑1 (MQ=60)
GTTCCATGTCACTCCCTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAG < SRR4302534.692920/94‑1 (MQ=60)
GTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAG > SRR4302534.1972939/1‑94 (MQ=60)
GTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAG < SRR4302534.4334780/94‑1 (MQ=60)
TTCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGC > SRR4302534.2805855/1‑94 (MQ=60)
TCCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCA < SRR4302534.5509779/94‑1 (MQ=60)
CCATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAG > SRR4302534.1632055/1‑94 (MQ=60)
ATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGAT > SRR4302534.1647117/1‑94 (MQ=60)
ATGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGAT > SRR4302534.577914/1‑94 (MQ=60)
TGTCACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATA > SRR4302534.2716782/1‑94 (MQ=60)
TGTCACTCACTCTTTTTTAAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATA < SRR4302534.4509788/94‑1 (MQ=60)
CCCTCACTCTTTTTTGAATAGCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAA < SRR4302534.620784/94‑1 (MQ=60)
CACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAA > SRR4302534.2372621/1‑94 (MQ=60)
CACTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAA > SRR4302534.1655060/1‑94 (MQ=60)
CCTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAA < SRR4302534.448322/94‑1 (MQ=60)
CTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAAC < SRR4302534.4885128/94‑1 (MQ=60)
CTCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAAA > SRR4302534.1176321/1‑94 (MQ=60)
TCACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACA > SRR4302534.849721/1‑94 (MQ=60)
CACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAA < SRR4302534.132382/94‑1 (MQ=60)
CACTCTTTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAA < SRR4302534.2238944/94‑1 (MQ=60)
TTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACAC < SRR4302534.2715478/94‑1 (MQ=60)
TTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACAC < SRR4302534.738444/94‑1 (MQ=60)
TTTTTGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACAC > SRR4302534.1633935/1‑94 (MQ=60)
TGAATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATT > SRR4302534.5110367/1‑94 (MQ=60)
ATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCG < SRR4302534.3864119/94‑1 (MQ=60)
ATATCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCG > SRR4302534.697534/1‑94 (MQ=60)
TCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAG > SRR4302534.2615756/1‑94 (MQ=60)
TCCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAG < SRR4302534.164850/94‑1 (MQ=60)
CCATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGG > SRR4302534.5349483/1‑94 (MQ=60)
ATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCA > SRR4302534.2824145/1‑94 (MQ=60)
ATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCA < SRR4302534.4712128/94‑1 (MQ=60)
ATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCA > SRR4302534.2635432/1‑94 (MQ=60)
ATCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCA > SRR4302534.3792380/1‑94 (MQ=60)
TCCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAA < SRR4302534.6338116/94‑1 (MQ=60)
CCCTGGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAAT > SRR4302534.1820532/1‑94 (MQ=60)
ctgGGG‑GGGCTTTTATCGTCTTTGCTGTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGG < SRR4302534.2033248/91‑1 (MQ=60)
tgGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGT > SRR4302534.4552669/3‑94 (MQ=60)
tgGGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGT < SRR4302534.2568340/92‑1 (MQ=60)
G‑GGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTG < SRR4302534.6255947/94‑1 (MQ=60)
G‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTT < SRR4302534.83295/94‑1 (MQ=60)
GCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > SRR4302534.3884755/1‑94 (MQ=60)
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TACAGGGCCAGCGTAAGGGATATAAAGCGAACGCTGTTTTTTTGTTTTTGGTTCCATGTCACTCACTCTTTTTTGAATATCCATCCCT‑GGG‑GGGCTTTTATCGTCTTTGCTTTACCGCCAGGGCGTCGGCCTCAAGTATAAAGCAGATAAAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > NC_000913/1553637‑1553823
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
