Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,571,055	T→C	L724L (TTA→TTG)	pqqL ←	putative peptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,571,055	0	T	C	100.0%	1007.8 / NA	287	L724L (TTA→TTG)	pqqL	putative peptidase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (138/149); total (138/149)

Only 100 of 292 total aligned reads displayed.

TTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTG  >  NC_000913/1570965‑1571144

   ttCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTa                                                                                      <  2:8474543/93‑1 (MQ=255)

   ttCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTa                                                                                      >  2:2877613/1‑93 (MQ=255)

    tCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTaa                                                                                     <  2:1517/93‑1 (MQ=255)

    tCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTaa                                                                                     <  2:5452962/93‑1 (MQ=255)

    tCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTaa                                                                                     <  2:48011/93‑1 (MQ=255)

      ttttACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAAcg                                                                                   >  2:5588862/1‑93 (MQ=255)

       tttACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAAcgc                                                                                  <  2:567995/93‑1 (MQ=255)

          aCAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTa                                                                               >  1:2690686/1‑93 (MQ=255)

            aGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAAt                                                                             >  1:8284097/1‑93 (MQ=255)

            aGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAAt                                                                             <  1:5949821/93‑1 (MQ=255)

             gTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAAtt                                                                            >  1:8540213/1‑93 (MQ=255)

             gTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAAtt                                                                            >  1:4042121/1‑93 (MQ=255)

               aaCCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTaa                                                                          <  1:7071139/93‑1 (MQ=255)

                aCCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAAc                                                                         >  2:4933650/1‑93 (MQ=255)

                aCCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAAc                                                                         >  1:4926990/1‑93 (MQ=255)

                   gATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGcc                                                                      >  1:5492187/1‑93 (MQ=255)

                    aTGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCa                                                                     <  1:6527401/93‑1 (MQ=255)

                      gCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACg                                                                   >  2:3858003/1‑93 (MQ=255)

                       ggTTGTCCGTCCCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGa                                                                  <  1:3658567/92‑1 (MQ=255)

                       cGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGa                                                                  <  1:119152/93‑1 (MQ=255)

                        gTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAg                                                                 >  2:2058889/1‑93 (MQ=255)

                         ttGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGt                                                                >  1:2528904/1‑93 (MQ=255)

                         ttGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCAACGAGt                                                                >  1:5652278/1‑93 (MQ=255)

                          tGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGtt                                                               >  1:2463762/1‑93 (MQ=255)

                          tGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGtt                                                               <  1:4300071/93‑1 (MQ=255)

                            tCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGGAAAGCGTAATTAACGCCACGAGGTTg                                                             >  2:5056285/1‑93 (MQ=255)

                             ccGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGt                                                            >  1:7635289/1‑93 (MQ=255)

                               gTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGtct                                                          >  2:4474242/1‑93 (MQ=255)

                                tCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGCGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGtctt                                                         >  1:1374903/1‑93 (MQ=255)

                                 cgcgcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGtcttc                                                        <  1:6384654/93‑1 (MQ=255)

                                 cgcgcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGtcttc                                                        <  1:1782175/93‑1 (MQ=255)

                                 cgcgcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGtcttc                                                        <  2:7955037/93‑1 (MQ=255)

                                 cgcgcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGtcttc                                                        <  2:7758376/93‑1 (MQ=255)

                                   ctcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTg                                                      <  2:2681390/91‑1 (MQ=255)

                                   cgcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTg                                                      <  1:5557743/93‑1 (MQ=255)

                                   cgcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTg                                                      <  1:8104978/93‑1 (MQ=255)

                                    gcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTgg                                                     >  2:1790448/1‑92 (MQ=255)

                                    gcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGc                                                     <  1:2851364/93‑1 (MQ=255)

                                    gcgAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGc                                                     <  1:7887271/93‑1 (MQ=255)

                                       aGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGAc                                                  <  1:72566/93‑1 (MQ=255)

                                       aGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGAc                                                  >  2:8586702/1‑93 (MQ=255)

                                       aGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGAc                                                  >  2:7205432/1‑93 (MQ=255)

                                        gTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACa                                                 >  2:954488/1‑93 (MQ=255)

                                        gTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACa                                                 >  1:4714765/1‑93 (MQ=255)

                                         ttAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACAt                                                >  2:7496978/1‑93 (MQ=255)

                                         ttAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACAt                                                <  2:5599609/93‑1 (MQ=255)

                                         ttAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACAt                                                <  2:1422089/93‑1 (MQ=255)

                                           aaTGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGATTGTCTTCTGCGACATTa                                              >  2:6260866/1‑93 (MQ=255)

                                            aTGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAc                                             <  1:7441870/93‑1 (MQ=255)

                                            aTGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAc                                             <  2:2423451/93‑1 (MQ=255)

                                             tGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc                                            <  2:3259981/93‑1 (MQ=255)

                                             tGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAcc                                            <  2:2839714/93‑1 (MQ=255)

                                               gTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTATTCTGCGACATTACCGa                                          <  2:3177928/93‑1 (MQ=255)

                                                tttACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGaa                                         >  1:213033/1‑92 (MQ=255)

                                                tttACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGAc                                         <  1:5416917/93‑1 (MQ=255)

                                                tttACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGAGACATTACCGAc                                         <  1:1021212/93‑1 (MQ=255)

                                                  tACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACaa                                       <  2:1589147/93‑1 (MQ=255)

                                                   tccTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAAt                                      <  2:7088283/92‑1 (MQ=255)

                                                   aCCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAAt                                      <  1:6232586/93‑1 (MQ=255)

                                                   aCCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAAt                                      <  2:3498737/93‑1 (MQ=255)

                                                    ccTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATg                                     >  1:3911245/1‑93 (MQ=255)

                                                     cTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGa                                    >  2:225232/1‑93 (MQ=255)

                                                      tGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGAc                                   >  2:1229289/1‑93 (MQ=255)

                                                      tGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGAc                                   >  2:2529778/1‑93 (MQ=255)

                                                        cGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACaa                                 >  2:3628171/1‑93 (MQ=255)

                                                         ggCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACaaa                                <  2:6988816/93‑1 (MQ=255)

                                                         ggCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACaaa                                >  2:6843391/1‑93 (MQ=255)

                                                          gCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAc                               <  1:152807/93‑1 (MQ=255)

                                                          gCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAc                               >  2:5921838/1‑93 (MQ=255)

                                                            tAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACgc                             >  2:3013141/1‑92 (MQ=255)

                                                            tAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGt                             <  2:3330105/93‑1 (MQ=255)

                                                            tAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGt                             <  1:8707218/93‑1 (MQ=255)

                                                            tAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAAGt                             <  2:6598166/93‑1 (MQ=255)

                                                            tAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAAGt                             >  2:7619892/1‑93 (MQ=255)

                                                             aaTGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTg                            >  2:8410430/1‑93 (MQ=255)

                                                              aTGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGa                           <  1:312291/93‑1 (MQ=255)

                                                                ggCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGata                         >  1:8000561/1‑93 (MQ=255)

                                                                ggCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGata                         <  1:3478663/93‑1 (MQ=255)

                                                                  cGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATc                       <  2:5295720/93‑1 (MQ=255)

                                                                     aTCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGc                    <  2:8690528/93‑1 (MQ=255)

                                                                      tCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCt                   >  2:1615147/1‑93 (MQ=255)

                                                                      tCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCt                   >  2:4287914/1‑93 (MQ=255)

                                                                      tCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCt                   >  1:5797042/1‑93 (MQ=255)

                                                                      tCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAAGTGATATCCGCt                   <  1:3380785/93‑1 (MQ=255)

                                                                       cAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTg                  >  2:7323514/1‑93 (MQ=255)

                                                                        agagTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTgg                 >  2:1180963/1‑93 (MQ=255)

                                                                         gagTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGga                >  2:7360698/1‑93 (MQ=255)

                                                                          agTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGgag               >  2:878858/1‑93 (MQ=255)

                                                                           gtgtTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGgaga              <  1:4279722/93‑1 (MQ=255)

                                                                            tgtTTGATTGATCCCAAGTAACGTGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGAt             <  1:7526296/93‑1 (MQ=255)

                                                                              tttGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGa           >  1:4165705/1‑93 (MQ=255)

                                                                                 gattgatCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGaaaa        >  1:2312404/1‑93 (MQ=255)

                                                                                  attgatCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAAc       <  2:5836697/93‑1 (MQ=255)

                                                                                  attgatCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAAc       <  1:6662490/93‑1 (MQ=255)

                                                                                   ttgatCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACa      >  1:6947312/1‑93 (MQ=255)

                                                                                     gatCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAAt    <  1:5257835/93‑1 (MQ=255)

                                                                                      atCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAAtt   <  2:6452044/93‑1 (MQ=255)

                                                                                      atCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAAtt   >  2:4668690/1‑93 (MQ=255)

                                                                                      atCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATACCCGCTGGAGATGAAAACAAtt   <  1:6303078/93‑1 (MQ=255)

                                                                                       tCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTg  <  2:7871672/93‑1 (MQ=255)

TTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTG  >  NC_000913/1570965‑1571144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGA  >  NC_000913/1570962‑1571148

ATTTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCC                                                                                               >  SRR4302541.7657588/1‑94 (MQ=60)

ATTTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCC                                                                                               <  SRR4302541.8445202/94‑1 (MQ=60)

 TTTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCA                                                                                              >  SRR4302541.7377939/1‑94 (MQ=60)

  TTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAA                                                                                             <  SRR4302541.1167357/94‑1 (MQ=60)

  TTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAA                                                                                             <  SRR4302541.4085918/94‑1 (MQ=60)

  TTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAA                                                                                             <  SRR4302541.2522468/94‑1 (MQ=60)

  TTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGGGTTTGATTGATCCCAA                                                                                             >  SRR4302541.4437708/1‑94 (MQ=60)

   TTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAG                                                                                            >  SRR4302541.5283210/1‑94 (MQ=60)

     GTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTA                                                                                          >  SRR4302541.6367805/1‑94 (MQ=60)

      TTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAA                                                                                         <  SRR4302541.3751465/94‑1 (MQ=60)

      TTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAA                                                                                         <  SRR4302541.4106765/94‑1 (MQ=60)

       TCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAAC                                                                                        >  SRR4302541.3090903/1‑94 (MQ=60)

       TCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAAC                                                                                        <  SRR4302541.6032577/94‑1 (MQ=60)

        CTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACG                                                                                       <  SRR4302541.8693630/94‑1 (MQ=60)

            TACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTA                                                                                   >  SRR4302541.1627335/1‑94 (MQ=60)

            TACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTA                                                                                   >  SRR4302541.2717411/1‑94 (MQ=60)

              CAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAAT                                                                                 >  SRR4302541.8374199/1‑94 (MQ=60)

               AGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATT                                                                                <  SRR4302541.6010451/94‑1 (MQ=60)

               AGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATT                                                                                >  SRR4302541.8632030/1‑94 (MQ=60)

               AGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATT                                                                                >  SRR4302541.4082032/1‑94 (MQ=60)

                 TAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAA                                                                              >  SRR4302541.5905223/1‑94 (MQ=60)

                 TAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAA                                                                              >  SRR4302541.3623287/1‑94 (MQ=60)

                  AACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAAC                                                                             >  SRR4302541.4977258/1‑94 (MQ=60)

                  AACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAAC                                                                             >  SRR4302541.1321375/1‑94 (MQ=60)

                  AACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAAC                                                                             <  SRR4302541.7146338/94‑1 (MQ=60)

                   ACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACG                                                                            >  SRR4302541.7423811/1‑94 (MQ=60)

                   ACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACC                                                                            >  SRR4302541.8775113/1‑94 (MQ=60)

                     CGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCC                                                                          <  SRR4302541.7363248/94‑1 (MQ=60)

                     CGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCC                                                                          >  SRR4302541.5548461/1‑94 (MQ=60)

                      GATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCA                                                                         >  SRR4302541.4075100/1‑94 (MQ=60)

                      GATGCGTTGTCCGGCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCA                                                                         <  SRR4302541.366491/94‑1 (MQ=60)

                       ATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCAC                                                                        <  SRR4302541.7222768/94‑1 (MQ=60)

                       ATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCAC                                                                        <  SRR4302541.6877101/94‑1 (MQ=60)

                       ATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCAC                                                                        <  SRR4302541.6594028/94‑1 (MQ=60)

                       ATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCAC                                                                        >  SRR4302541.1183254/1‑94 (MQ=60)

                        TGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACG                                                                       <  SRR4302541.7686454/94‑1 (MQ=60)

                        TGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACG                                                                       <  SRR4302541.8883857/94‑1 (MQ=60)

                        TGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACG                                                                       >  SRR4302541.2650516/1‑94 (MQ=60)

                          GGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAG                                                                     <  SRR4302541.1860377/94‑1 (MQ=60)

                          GGTTGTCCGTCCCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAG                                                                     <  SRR4302541.3695688/94‑1 (MQ=60)

                          CGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAG                                                                     <  SRR4302541.5533618/94‑1 (MQ=60)

                          CGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAG                                                                     <  SRR4302541.120100/94‑1 (MQ=60)

                           GTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGT                                                                    <  SRR4302541.8538458/94‑1 (MQ=60)

                           GTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGT                                                                    >  SRR4302541.2398543/1‑94 (MQ=60)

                           GTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGT                                                                    >  SRR4302541.2554323/1‑94 (MQ=60)

                           GTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCAACGAGT                                                                    >  SRR4302541.5710019/1‑94 (MQ=60)

                            TTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTT                                                                   >  SRR4302541.2488363/1‑94 (MQ=60)

                             TGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTT                                                                  <  SRR4302541.4343013/94‑1 (MQ=60)

                              GTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTG                                                                 >  SRR4302541.2215723/1‑94 (MQ=60)

                              GTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTG                                                                 <  SRR4302541.7996960/94‑1 (MQ=60)

                               TCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGT                                                                <  SRR4302541.4324513/94‑1 (MQ=60)

                               TCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGT                                                                >  SRR4302541.7716731/1‑94 (MQ=60)

                                CCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTC                                                               <  SRR4302541.179378/94‑1 (MQ=60)

                                  GTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTT                                                             <  SRR4302541.8133985/94‑1 (MQ=60)

                                  GTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGCGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTT                                                             >  SRR4302541.1388422/1‑94 (MQ=60)

                                   TCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTC                                                            <  SRR4302541.4897845/94‑1 (MQ=60)

                                   GCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTC                                                            <  SRR4302541.1473730/94‑1 (MQ=60)

                                    CGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCT                                                           <  SRR4302541.6449852/94‑1 (MQ=60)

                                    CGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCT                                                           <  SRR4302541.1799473/94‑1 (MQ=60)

                                      CGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGC                                                         <  SRR4302541.8193811/94‑1 (MQ=60)

                                      CGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGC                                                         <  SRR4302541.5614641/94‑1 (MQ=60)

                                       GCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCG                                                        <  SRR4302541.7973982/94‑1 (MQ=60)

                                       GCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCG                                                        <  SRR4302541.2880039/94‑1 (MQ=60)

                                        CTAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTATTGCCACGAGCTTGTCTTCTGCGA                                                       >  SRR4302541.7884876/1‑94 (MQ=60)

                                          AGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACA                                                     >  SRR4302541.4762826/1‑94 (MQ=60)

                                          AGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACA                                                     >  SRR4302541.4537655/1‑94 (MQ=60)

                                          AGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACA                                                     <  SRR4302541.73177/94‑1 (MQ=60)

                                            TTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATT                                                   >  SRR4302541.629089/1‑94 (MQ=60)

                                              AATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTAC                                                 >  SRR4302541.5612551/1‑94 (MQ=60)

                                               ATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACC                                                <  SRR4302541.7521393/94‑1 (MQ=60)

                                                TGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCG                                               >  SRR4302541.2663746/1‑94 (MQ=60)

                                                 GGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGA                                              >  SRR4302541.3114125/1‑94 (MQ=60)

                                                  GTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGAC                                             >  SRR4302541.829984/1‑94 (MQ=60)

                                                  GTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGAC                                             <  SRR4302541.6697529/94‑1 (MQ=60)

                                                  GTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGAA                                             >  SRR4302541.214670/1‑94 (MQ=60)

                                                   TTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACA                                            <  SRR4302541.5472482/94‑1 (MQ=60)

                                                   TTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACA                                            <  SRR4302541.5514968/94‑1 (MQ=60)

                                                   TTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGAGACATTACCGACA                                            <  SRR4302541.1030648/94‑1 (MQ=60)

                                                    TTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAA                                           <  SRR4302541.2523760/94‑1 (MQ=60)

                                                     TACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAAT                                          >  SRR4302541.5381178/1‑94 (MQ=60)

                                                     TACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAAT                                          <  SRR4302541.2175052/94‑1 (MQ=60)

                                                      TCCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATG                                         <  SRR4302541.2719332/94‑1 (MQ=60)

                                                      ACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATG                                         >  SRR4302541.3950308/1‑94 (MQ=60)

                                                      ACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATG                                         <  SRR4302541.6296270/94‑1 (MQ=60)

                                                       CCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGA                                        <  SRR4302541.1967930/94‑1 (MQ=60)

                                                        CTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGAC                                       >  SRR4302541.5316497/1‑94 (MQ=60)

                                                        CTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGAC                                       >  SRR4302541.4834118/1‑94 (MQ=60)

                                                        CTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGAC                                       >  SRR4302541.4028841/1‑94 (MQ=60)

                                                        CTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGAC                                       <  SRR4302541.6513958/94‑1 (MQ=60)

                                                            GGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAC                                   >  SRR4302541.316234/1‑94 (MQ=60)

                                                            GGCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAC                                   <  SRR4302541.4271244/94‑1 (MQ=60)

                                                             GCTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACG                                  <  SRR4302541.153956/94‑1 (MQ=60)

                                                              CTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGT                                 <  SRR4302541.1455956/94‑1 (MQ=60)

                                                              CTAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGT                                 >  SRR4302541.5587964/1‑94 (MQ=60)

                                                               TAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTG                                <  SRR4302541.4311163/94‑1 (MQ=60)

                                                               TAATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTG                                <  SRR4302541.8800373/94‑1 (MQ=60)

                                                                AATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGA                               <  SRR4302541.8477074/94‑1 (MQ=60)

                                                                 ATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGAT                              <  SRR4302541.315057/94‑1 (MQ=60)

                                                                 ATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGAT                              <  SRR4302541.5899997/94‑1 (MQ=60)

                                                                 ATGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGAT                              <  SRR4302541.5680270/94‑1 (MQ=60)

                                                                  TGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATA                             >  SRR4302541.8088595/1‑94 (MQ=60)

                                                                  TGGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATA                             <  SRR4302541.6307561/94‑1 (MQ=60)

                                                                   GGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATAT                            <  SRR4302541.2748137/94‑1 (MQ=60)

                                                                   GGCGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATAT                            <  SRR4302541.3513461/94‑1 (MQ=60)

                                                                    GCGAATCAGAGTGTTTTATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGGCATTACCGACAATGACAAACGTGATATC                           <  SRR4302541.7560380/94‑1 (MQ=60)

                                                                    GCGAATCAGAGTGTTTGATTGATCTCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATC                           <  SRR4302541.8891766/94‑1 (MQ=60)

                                                                     GGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCC                          <  SRR4302541.7626003/94‑1 (MQ=60)

                                                                     CGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCC                          >  SRR4302541.5734813/1‑94 (MQ=60)

                                                                     CGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCC                          <  SRR4302541.7103540/94‑1 (MQ=60)

                                                                     CGAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCC                          <  SRR4302541.818532/94‑1 (MQ=60)

                                                                      GAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCG                         <  SRR4302541.3893213/94‑1 (MQ=60)

                                                                      GAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCG                         <  SRR4302541.343000/94‑1 (MQ=60)

                                                                      GAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCG                         <  SRR4302541.640172/94‑1 (MQ=60)

                                                                      GAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCG                         <  SRR4302541.5062120/94‑1 (MQ=60)

                                                                      GAATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCG                         <  SRR4302541.6634920/94‑1 (MQ=60)

                                                                        ATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCT                       >  SRR4302541.5855931/1‑94 (MQ=60)

                                                                        ATCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCT                       >  SRR4302541.6335096/1‑94 (MQ=60)

                                                                         TCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTG                      >  SRR4302541.8014553/1‑94 (MQ=60)

                                                                         TCAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAAAGTGATATCCGCTG                      <  SRR4302541.3414488/94‑1 (MQ=60)

                                                                          CATAGTGTGTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGG                     <  SRR4302541.1379925/94‑1 (MQ=60)

                                                                          CAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGG                     >  SRR4302541.5817283/1‑94 (MQ=60)

                                                                          CAGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGG                     >  SRR4302541.2389700/1‑94 (MQ=60)

                                                                           AGAGTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGA                    >  SRR4302541.8123216/1‑94 (MQ=60)

                                                                              GTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGAT                 <  SRR4302541.4322472/94‑1 (MQ=60)

                                                                              GTGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGAT                 <  SRR4302541.334592/94‑1 (MQ=60)

                                                                               TGTTTGATTGATCCCAAGTAACGTGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATG                <  SRR4302541.7606722/94‑1 (MQ=60)

                                                                               TGTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATG                >  SRR4302541.4322479/1‑94 (MQ=60)

                                                                                GTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGA               >  SRR4302541.4206955/1‑94 (MQ=60)

                                                                                GTTTGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGA               >  SRR4302541.6750642/1‑94 (MQ=60)

                                                                                   TGATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAA            >  SRR4302541.2334837/1‑94 (MQ=60)

                                                                                    GATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAAC           <  SRR4302541.6541609/94‑1 (MQ=60)

                                                                                    GATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGGGATATCCGCTGGAGATGAAAAC           >  SRR4302541.2544821/1‑94 (MQ=60)

                                                                                     ATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACA          <  SRR4302541.6730850/94‑1 (MQ=60)

                                                                                     ATTGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACA          >  SRR4302541.7021412/1‑94 (MQ=60)

                                                                                       TGATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAAT        <  SRR4302541.7838478/94‑1 (MQ=60)

                                                                                        GATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATT       <  SRR4302541.5312012/94‑1 (MQ=60)

                                                                                        GATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATT       >  SRR4302541.7039769/1‑94 (MQ=60)

                                                                                         ATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTG      >  SRR4302541.7318465/1‑94 (MQ=60)

                                                                                         ATCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATACCCGCTGGAGATGAAAACAATTG      <  SRR4302541.6367511/94‑1 (MQ=60)

                                                                                          TCCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGG     <  SRR4302541.417822/94‑1 (MQ=60)

                                                                                           CCCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGC    >  SRR4302541.7958811/1‑94 (MQ=60)

                                                                                            CCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCG   >  SRR4302541.7582499/1‑94 (MQ=60)

                                                                                            CCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCG   >  SRR4302541.3046453/1‑94 (MQ=60)

                                                                                            CCAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCA   >  SRR4302541.3428304/1‑94 (MQ=60)

                                                                                             CAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAATACAATTGGCGA  <  SRR4302541.6051495/94‑1 (MQ=60)

                                                                                             CAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGA  <  SRR4302541.6051493/94‑1 (MQ=60)

                                                                                             CAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGA  <  SRR4302541.1394454/94‑1 (MQ=60)

ATTTTGTTCTTTTACAGTAACCGATGCGTTGTCCGTCGCGCGAGTTAATGGTTTACCTGCGGCTAATGGCGAATCAGAGTGTTTGATTGATCCTAAGTAACGCGTAATTAACGCCACGAGTTTGTCTTCTGCGACATTACCGACAATGACAAACGTGATATCCGCTGGAGATGAAAACAATTGGCGA  >  NC_000913/1570962‑1571148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`