Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,671,621	A→G	intergenic (‑96/‑316)	b1600 ← / → b1601	putative chaperone/putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,671,621	0	A	G	100.0%	767.7 / NA	216	intergenic (‑96/‑316)	b1600/b1601	putative chaperone/putative transport protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (117/99); total (117/99)

Only 100 of 223 total aligned reads displayed.

TTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAAT  >  NC_000913/1671531‑1671710

ttCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCgga                                                                                         >  1:23687/1‑93 (MQ=255)

 tctcCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCggaa                                                                                        <  2:6189775/93‑1 (MQ=255)

  ctcCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCggaag                                                                                       >  2:696381/1‑93 (MQ=255)

  ctcCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCggaag                                                                                       >  2:5955859/1‑93 (MQ=255)

    ccTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGgaagaa                                                                                     >  2:2550054/1‑93 (MQ=255)

     cTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGaaa                                                                                    >  1:6339671/1‑93 (MQ=255)

     cTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGaaa                                                                                    <  2:3568933/93‑1 (MQ=255)

      tGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAg                                                                                   >  1:2347393/1‑93 (MQ=255)

      tGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAg                                                                                   <  1:6268789/93‑1 (MQ=255)

       gCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAgg                                                                                  <  1:6070622/93‑1 (MQ=255)

         aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGAc                                                                                >  1:4563853/1‑93 (MQ=255)

         aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGAc                                                                                <  1:878251/93‑1 (MQ=255)

         aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGAc                                                                                >  2:409848/1‑93 (MQ=255)

         aaGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGAc                                                                                >  2:5304936/1‑93 (MQ=255)

          agagAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACt                                                                               <  1:260909/93‑1 (MQ=255)

          agagAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACt                                                                               >  2:429905/1‑93 (MQ=255)

          agagAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACt                                                                               <  2:5435569/93‑1 (MQ=255)

            agaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTaa                                                                             >  2:3146484/1‑93 (MQ=255)

             gaATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTaaa                                                                            >  1:1953262/1‑93 (MQ=255)

                ttattTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAgcg                                                                         >  2:5630227/1‑93 (MQ=255)

                ttattTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAgcg                                                                         <  1:1409569/93‑1 (MQ=255)

                   ttttAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGt                                                                      <  1:956435/93‑1 (MQ=255)

                      tAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTgc                                                                   <  1:6411416/93‑1 (MQ=255)

                         ttttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGcc                                                                >  2:1824189/1‑93 (MQ=255)

                         ttttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGcc                                                                <  1:3789448/93‑1 (MQ=255)

                          tttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTTGCGGAAGAAAGGACTAAAGCGCGTTGCGCCa                                                               <  1:3564854/93‑1 (MQ=255)

                          tttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCa                                                               >  1:5846482/1‑93 (MQ=255)

                           ttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAg                                                              <  2:172173/93‑1 (MQ=255)

                           ttCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAg                                                              <  2:850081/93‑1 (MQ=255)

                            tCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGt                                                             >  1:2529213/1‑93 (MQ=255)

                             cGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtg                                                            >  1:1180264/1‑93 (MQ=255)

                              gCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtgc                                                           >  1:5142197/1‑93 (MQ=255)

                              gCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtgc                                                           >  2:3773424/1‑93 (MQ=255)

                              gCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtgc                                                           <  2:3498315/93‑1 (MQ=255)

                              gCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtgc                                                           <  2:5801162/93‑1 (MQ=255)

                                 tAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtgctgc                                                        >  1:537790/1‑93 (MQ=255)

                                 tAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGtgctgc                                                        <  1:1508115/93‑1 (MQ=255)

                                  aaTTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTgctgct                                                       <  1:4745278/93‑1 (MQ=255)

                                   aTTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTc                                                      >  2:1553918/1‑93 (MQ=255)

                                    ttCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCa                                                     >  2:1104784/1‑93 (MQ=255)

                                     tCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCAc                                                    >  2:2749943/1‑93 (MQ=255)

                                      cAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCAcc                                                   >  1:2271594/1‑93 (MQ=255)

                                       aGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCt                                                  >  1:318369/1‑93 (MQ=255)

                                       aGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCt                                                  >  2:4545793/1‑93 (MQ=255)

                                        gCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGCAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTa                                                 >  2:5748783/1‑93 (MQ=255)

                                         cGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTAc                                                >  2:5602593/1‑93 (MQ=255)

                                           aaaCCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGa                                              <  2:119993/93‑1 (MQ=255)

                                           aaaCCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGa                                              <  2:1658738/93‑1 (MQ=255)

                                           aaaCCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGa                                              >  1:4361534/1‑93 (MQ=255)

                                           aaaCCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGa                                              <  2:4821380/93‑1 (MQ=255)

                                           aaaCCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGa                                              <  1:5425344/93‑1 (MQ=255)

                                            aaCCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAg                                             >  2:3032578/1‑93 (MQ=255)

                                                aaagtaaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAg                                         >  2:1018903/1‑93 (MQ=255)

                                                aaagtaaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAg                                         >  1:6363405/1‑93 (MQ=255)

                                                 aagtaaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGTGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGa                                        >  2:2264723/1‑93 (MQ=255)

                                                 aagtaaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGa                                        >  2:4382232/1‑93 (MQ=255)

                                                   gtaaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATa                                      <  2:145993/93‑1 (MQ=255)

                                                    taaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAg                                     >  1:3422946/1‑93 (MQ=255)

                                                    taaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAg                                     >  1:4203765/1‑93 (MQ=255)

                                                     aaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAgc                                    >  1:5326467/1‑92 (MQ=255)

                                                     aaagtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGt                                    <  2:1919891/93‑1 (MQ=255)

                                                       agtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTgg                                  <  1:3536692/93‑1 (MQ=255)

                                                        gtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGa                                 >  2:3816046/1‑93 (MQ=255)

                                                        gtGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGa                                 >  2:2014943/1‑93 (MQ=255)

                                                        gtGGTCAAGCCCCGAGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGa                                 >  2:2615007/1‑93 (MQ=255)

                                                         tGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGAt                                <  2:2135812/93‑1 (MQ=255)

                                                         tGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGAt                                >  1:549462/1‑93 (MQ=255)

                                                           gTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGa                              <  2:4598019/93‑1 (MQ=255)

                                                             cAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAgg                            >  2:1353858/1‑93 (MQ=255)

                                                              aaGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGt                           >  1:2458716/1‑93 (MQ=255)

                                                              aaGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGt                           >  1:1761610/1‑93 (MQ=255)

                                                              aaGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGt                           >  1:4671631/1‑93 (MQ=255)

                                                               aGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTa                          >  1:4797573/1‑93 (MQ=255)

                                                               aGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTa                          <  2:6400078/93‑1 (MQ=255)

                                                               aGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTa                          <  2:1419396/93‑1 (MQ=255)

                                                                gCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTAc                         >  2:339555/1‑93 (MQ=255)

                                                                gCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTAc                         >  1:763435/1‑93 (MQ=255)

                                                                  cccGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGa                       >  1:6231091/1‑93 (MQ=255)

                                                                   ccGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGaa                      >  2:5010549/1‑93 (MQ=255)

                                                                   ccGCGCATAGCGCAAGCTTTAGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGaa                      >  2:5854266/1‑93 (MQ=255)

                                                                    cgcgCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAg                     <  1:3326829/93‑1 (MQ=255)

                                                                    cgcgCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAg                     >  1:5072324/1‑93 (MQ=255)

                                                                     gcgcATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGa                    <  1:5567114/93‑1 (MQ=255)

                                                                     gcgcATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGa                    >  2:4974587/1‑93 (MQ=255)

                                                                     gcgcATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGa                    <  1:5275506/93‑1 (MQ=255)

                                                                      cgcATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGAt                   <  1:3665609/93‑1 (MQ=255)

                                                                        cATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATgg                 <  1:4269304/93‑1 (MQ=255)

                                                                        cATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATgg                 <  1:2474570/93‑1 (MQ=255)

                                                                        cATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATgg                 <  2:2644585/93‑1 (MQ=255)

                                                                         aTAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATggg                >  2:3266232/1‑93 (MQ=255)

                                                                         aTAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATggg                <  2:5028710/93‑1 (MQ=255)

                                                                             cgcAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTaaa            <  2:1173769/93‑1 (MQ=255)

                                                                              gcAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAAt           >  2:2208289/1‑93 (MQ=255)

                                                                                aaGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGt         >  1:3086134/1‑93 (MQ=255)

                                                                                aaGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGGAAATGt         >  2:5536055/1‑93 (MQ=255)

                                                                                  gCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAg       <  1:1070258/93‑1 (MQ=255)

                                                                                  gCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAg       >  1:4142434/1‑93 (MQ=255)

                                                                                  gCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAg       >  1:487342/1‑93 (MQ=255)

                                                                                      tGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGaaaa   <  1:1302403/93‑1 (MQ=255)

                                                                                       ggCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAAt  >  2:231932/1‑93 (MQ=255)

TTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAAT  >  NC_000913/1671531‑1671710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAAC  >  NC_000913/1671529‑1671713

CCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGG                                                                                             >  SRR4302534.4877773/1‑94 (MQ=60)

 CTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGA                                                                                            >  SRR4302534.24314/1‑94 (MQ=60)

   TCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAG                                                                                          <  SRR4302534.4219321/94‑1 (MQ=60)

    CTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCAGAGCGCAAGCTGTGGCGGAAGA                                                                                         <  SRR4302534.5518722/94‑1 (MQ=60)

      CCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAA                                                                                       <  SRR4302534.4810640/94‑1 (MQ=60)

      CCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAA                                                                                       >  SRR4302534.6510907/1‑94 (MQ=60)

       CTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAG                                                                                      <  SRR4302534.5042018/94‑1 (MQ=60)

       CTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAG                                                                                      >  SRR4302534.2409683/1‑94 (MQ=60)

        TGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGG                                                                                     <  SRR4302534.6438535/94‑1 (MQ=60)

         GCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGA                                                                                    <  SRR4302534.6235670/94‑1 (MQ=60)

         GCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGA                                                                                    <  SRR4302534.1284441/94‑1 (MQ=60)

          CAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGAC                                                                                   >  SRR4302534.4687585/1‑94 (MQ=60)

           AAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACT                                                                                  <  SRR4302534.900460/94‑1 (MQ=60)

            AGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTA                                                                                 <  SRR4302534.267691/94‑1 (MQ=60)

            AGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTA                                                                                 <  SRR4302534.2419972/94‑1 (MQ=60)

             GAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAA                                                                                >  SRR4302534.2448047/1‑94 (MQ=60)

              AGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAA                                                                               >  SRR4302534.4577519/1‑94 (MQ=60)

              AGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAA                                                                               >  SRR4302534.2004381/1‑94 (MQ=60)

               GAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAG                                                                              <  SRR4302534.919840/94‑1 (MQ=60)

                AATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGC                                                                             >  SRR4302534.6523627/1‑94 (MQ=60)

                AATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGC                                                                             <  SRR4302534.4281637/94‑1 (MQ=60)

                 ATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCG                                                                            >  SRR4302534.945805/1‑94 (MQ=60)

                  TTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGC                                                                           <  SRR4302534.1446652/94‑1 (MQ=60)

                   TATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCG                                                                          <  SRR4302534.4981768/94‑1 (MQ=60)

                     TTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTT                                                                        >  SRR4302534.4891747/1‑94 (MQ=60)

                     TTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTT                                                                        <  SRR4302534.980788/94‑1 (MQ=60)

                      TTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTG                                                                       >  SRR4302534.4774326/1‑94 (MQ=60)

                       TTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGC                                                                      >  SRR4302534.1557958/1‑94 (MQ=60)

                        TAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCG                                                                     <  SRR4302534.6584415/94‑1 (MQ=60)

                          ATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCC                                                                   <  SRR4302534.2415609/94‑1 (MQ=60)

                           TTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCA                                                                  <  SRR4302534.3891183/94‑1 (MQ=60)

                           TTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCA                                                                  >  SRR4302534.6005212/1‑94 (MQ=60)

                            TTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTTGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAG                                                                 <  SRR4302534.3660747/94‑1 (MQ=60)

                             TTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGT                                                                >  SRR4302534.2596322/1‑94 (MQ=60)

                              TCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTG                                                               >  SRR4302534.1211288/1‑94 (MQ=60)

                               CGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGC                                                              >  SRR4302534.5280965/1‑94 (MQ=60)

                               CGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGC                                                              >  SRR4302534.60902/1‑94 (MQ=60)

                                 CTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTG                                                            >  SRR4302534.1769727/1‑94 (MQ=60)

                                 CTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTG                                                            >  SRR4302534.69735/1‑94 (MQ=60)

                                  TTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGC                                                           >  SRR4302534.551118/1‑94 (MQ=60)

                                   TAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCT                                                          <  SRR4302534.1547777/94‑1 (MQ=60)

                                    AATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTC                                                         >  SRR4302534.4777503/1‑94 (MQ=60)

                                    AATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTC                                                         >  SRR4302534.2679719/1‑94 (MQ=60)

                                    AATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTC                                                         <  SRR4302534.4874100/94‑1 (MQ=60)

                                      TTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCAC                                                       >  SRR4302534.5711356/1‑94 (MQ=60)

                                       TCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACC                                                      >  SRR4302534.2331829/1‑94 (MQ=60)

                                        CAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGGAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCT                                                     <  SRR4302534.3651804/94‑1 (MQ=60)

                                        CAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCT                                                     >  SRR4302534.326571/1‑94 (MQ=60)

                                          GCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTAC                                                   <  SRR4302534.5347114/94‑1 (MQ=60)

                                          GCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTAC                                                   <  SRR4302534.6430318/94‑1 (MQ=60)

                                           CGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACG                                                  >  SRR4302534.783878/1‑94 (MQ=60)

                                            GAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGA                                                 >  SRR4302534.4479177/1‑94 (MQ=60)

                                            GAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGA                                                 >  SRR4302534.1104191/1‑94 (MQ=60)

                                            GAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGA                                                 >  SRR4302534.5514389/1‑94 (MQ=60)

                                            GAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGA                                                 >  SRR4302534.2322946/1‑94 (MQ=60)

                                            GAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGA                                                 <  SRR4302534.4055690/94‑1 (MQ=60)

                                             AAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAG                                                <  SRR4302534.5571351/94‑1 (MQ=60)

                                             AAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAG                                                >  SRR4302534.3716344/1‑94 (MQ=60)

                                             AAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAG                                                <  SRR4302534.6197598/94‑1 (MQ=60)

                                                CCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAA                                             >  SRR4302534.6239634/1‑94 (MQ=60)

                                                 CAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAG                                            >  SRR4302534.6535228/1‑94 (MQ=60)

                                                  AAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGA                                           >  SRR4302534.6443222/1‑94 (MQ=60)

                                                    AGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATA                                         <  SRR4302534.5200654/94‑1 (MQ=60)

                                                     GTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAG                                        >  SRR4302534.4317255/1‑94 (MQ=60)

                                                     GTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAG                                        >  SRR4302534.3514915/1‑94 (MQ=60)

                                                      TAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGT                                       <  SRR4302534.5461274/94‑1 (MQ=60)

                                                      TAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGC                                       >  SRR4302534.5470135/1‑94 (MQ=60)

                                                       AAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTG                                      >  SRR4302534.3624061/1‑94 (MQ=60)

                                                       AAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTG                                      >  SRR4302534.2538185/1‑94 (MQ=60)

                                                         AGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGA                                    <  SRR4302534.3631829/94‑1 (MQ=60)

                                                          GTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGAT                                   >  SRR4302534.563019/1‑94 (MQ=60)

                                                            GGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGA                                 <  SRR4302534.5267396/94‑1 (MQ=60)

                                                             GTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAG                                <  SRR4302534.98640/94‑1 (MQ=60)

                                                             GTCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAG                                >  SRR4302534.2359748/1‑94 (MQ=60)

                                                              TCAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGG                               <  SRR4302534.653074/94‑1 (MQ=60)

                                                               CAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGT                              <  SRR4302534.1402179/94‑1 (MQ=60)

                                                               CAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGT                              >  SRR4302534.4798438/1‑94 (MQ=60)

                                                               CAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGT                              >  SRR4302534.1807309/1‑94 (MQ=60)

                                                               CAAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGT                              >  SRR4302534.2524037/1‑94 (MQ=60)

                                                                AAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTA                             >  SRR4302534.4927839/1‑94 (MQ=60)

                                                                AAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTA                             <  SRR4302534.1491437/94‑1 (MQ=60)

                                                                AAGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTA                             <  SRR4302534.5616116/94‑1 (MQ=60)

                                                                 AGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTAC                            >  SRR4302534.782383/1‑94 (MQ=60)

                                                                 AGCCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTAC                            <  SRR4302534.2565056/94‑1 (MQ=60)

                                                                   CCCCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGA                          >  SRR4302534.6400232/1‑94 (MQ=60)

                                                                     CCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAG                        >  SRR4302534.5209257/1‑94 (MQ=60)

                                                                     CCGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAG                        <  SRR4302534.3779830/94‑1 (MQ=60)

                                                                      CGCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGA                       <  SRR4302534.3415798/94‑1 (MQ=60)

                                                                       GCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGAT                      <  SRR4302534.5717458/94‑1 (MQ=60)

                                                                       GCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGAT                      >  SRR4302534.5546796/1‑94 (MQ=60)

                                                                       GCGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGAT                      <  SRR4302534.5417969/94‑1 (MQ=60)

                                                                        CGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATG                     <  SRR4302534.4360687/94‑1 (MQ=60)

                                                                        CGCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATG                     <  SRR4302534.3764121/94‑1 (MQ=60)

                                                                         GCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGG                    <  SRR4302534.2894950/94‑1 (MQ=60)

                                                                         GCATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGG                    <  SRR4302534.5871078/94‑1 (MQ=60)

                                                                          CATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGG                   >  SRR4302534.3430233/1‑94 (MQ=60)

                                                                          CATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGG                   <  SRR4302534.3398576/94‑1 (MQ=60)

                                                                          CATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGG                   <  SRR4302534.2540317/94‑1 (MQ=60)

                                                                          CATAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGG                   <  SRR4302534.4384687/94‑1 (MQ=60)

                                                                           ATAGGCCAAGCTTTTGCGGAAGAAAGGACTAAAACGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGACAGTGGATGAGGTACGAAGATGGGT                  <  SRR4302534.1768299/94‑1 (MQ=60)

                                                                            TAGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTA                 <  SRR4302534.2607379/94‑1 (MQ=60)

                                                                             AGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAA                <  SRR4302534.4390318/94‑1 (MQ=60)

                                                                             AGCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAA                >  SRR4302534.3621600/1‑94 (MQ=60)

                                                                              GCGCAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAA               >  SRR4302534.1891117/1‑94 (MQ=60)

                                                                                 CAAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGT            >  SRR4302534.3167230/1‑94 (MQ=60)

                                                                                  AAGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTA           >  SRR4302534.6517619/1‑94 (MQ=60)

                                                                                   AGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAG          >  SRR4302534.4254229/1‑94 (MQ=60)

                                                                                   AGCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAG          >  SRR4302534.499534/1‑94 (MQ=60)

                                                                                    GCTTTGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGA         <  SRR4302534.1098018/94‑1 (MQ=60)

                                                                                      TTTGGCGGAAGAAAGGGCTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAA       <  SRR4302534.3203745/94‑1 (MQ=60)

                                                                                        TGGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAAT     <  SRR4302534.1336754/94‑1 (MQ=60)

                                                                                         GGCGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATA    >  SRR4302534.4800613/1‑94 (MQ=60)

                                                                                           CGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAAC  >  SRR4302534.4154081/1‑94 (MQ=60)

                                                                                           CGGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAAC  <  SRR4302534.4058376/94‑1 (MQ=60)

CCTTCTCCTGCAAGAGAATTATTTTAATTTTCGCTTAATTCAGCGAAACCAAAGTAAAGTGGTCAAGCCCCGCGCATAGCGCAAGCTTTGGCAGAAGAAAGGACTAAAGCGCGTTGCGCCAGTGCTGCTCACCTACGAGCAAGATAGTGGATGAGGTACGAAGATGGGTAAATGTAGAAAATAAC  >  NC_000913/1671529‑1671713

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`