Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,551 |
+T |
intergenic (‑120/‑741) |
ppiC ← / → rep |
peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,550 | 1 | . | T | 99.4%
| 618.8
/ ‑3.6
| 162 | intergenic (‑119/‑742) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base T (85/76); total (85/77) |
| Fisher's exact test for biased strand distribution p-value = 4.75e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.95e-01 |
Only 100 of 163 total aligned reads displayed.
AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957471‑3957626
|
aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccc < 1:4084224/93‑2 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccctca > 2:5770856/1‑89 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccctca > 1:5068426/1‑89 (MQ=255)
aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑T‑ccctca > 2:779203/1‑89 (MQ=255)
taTCCGCAGATGCTAACTTAATTGTCAGTCAGGGAGTGGCTGATACATATATGGAAAAAGCCCGAAAAATCCGC‑G‑‑CTTCGCAGG‑TCCCTCAAg < 2:3470757/92‑1 (MQ=255)
aTCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAgg > 1:4166514/1‑93 (MQ=255)
tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAggg < 2:397218/93‑1 (MQ=255)
ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAgggg < 1:6026670/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGga < 2:2136648/93‑1 (MQ=255)
cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGga < 1:775692/93‑1 (MQ=255)
cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgaga < 1:3892346/93‑1 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGgagga > 2:2445627/1‑91 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaa > 1:5111037/1‑93 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGgagga > 2:2604226/1‑91 (MQ=255)
aGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAggggggga > 2:1538530/1‑89 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaa > 1:4393914/1‑93 (MQ=255)
gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATTGGAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGGAC‑CCTCAAGGGGAGaaa > 1:1166106/1‑93 (MQ=255)
aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGaaaa > 2:5020479/1‑93 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 1:3017804/1‑93 (MQ=255)
gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACt > 1:4294278/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt > 1:1639109/1‑93 (MQ=255)
cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACtt < 1:825080/93‑1 (MQ=255)
tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTa < 2:2187801/93‑1 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGGAGGAAACTTAg > 1:514303/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGGAGAAAACTTAg > 2:132061/1‑93 (MQ=255)
aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAg > 1:1849484/1‑93 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 1:685222/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg < 2:4110545/93‑1 (MQ=255)
aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAgg > 2:5331970/1‑93 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGGAAACTTAggg > 1:5908735/1‑93 (MQ=255)
cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAggg < 2:5619305/93‑1 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCCAGGGGAGAAAACTTAGGGcc > 2:1970630/1‑93 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc > 2:4962416/1‑93 (MQ=255)
tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGcc < 1:3690437/93‑1 (MQ=255)
aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCct > 2:5155373/1‑93 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc > 2:1977139/1‑93 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc > 2:5200122/1‑93 (MQ=255)
aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctc < 1:3876923/93‑1 (MQ=255)
ttGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCctct < 1:4651790/93‑1 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa > 1:3511754/1‑93 (MQ=255)
tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTa > 2:575637/1‑93 (MQ=255)
gtcagtcgGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:3545410/93‑1 (MQ=255)
tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg < 2:4185181/93‑1 (MQ=255)
cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:474921/93‑1 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 1:378992/1‑93 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:2639225/1‑93 (MQ=255)
agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:6329185/1‑93 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:579687/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:5172568/1‑93 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:5323247/1‑93 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:4103869/93‑1 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:1364245/1‑93 (MQ=255)
gtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc < 1:5404287/93‑1 (MQ=255)
tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt < 1:3275527/93‑1 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 1:1319164/1‑93 (MQ=255)
agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc > 2:4016867/1‑93 (MQ=255)
gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa > 2:5896571/1‑93 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGATACAAAg < 2:934872/93‑1 (MQ=255)
aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAg > 2:5669224/1‑93 (MQ=255)
gTGGCTGGTACATATATGGCAAAAGCGAGGAAAATCC‑G‑GGTT‑TCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 1:3465299/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGTAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGTGCCTCTATGGGCTACAAAGTc < 2:3801826/93‑1 (MQ=255)
tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTCCAAAGTc < 2:3252400/93‑1 (MQ=255)
tGGCGGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 1:2343987/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:341292/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:5384875/93‑1 (MQ=255)
cTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:1915603/93‑1 (MQ=255)
tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 1:6438646/1‑93 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:2336390/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 1:1013719/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:4715321/93‑1 (MQ=255)
ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt > 2:3270577/1‑93 (MQ=255)
gTACATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:1358784/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg < 2:6035863/93‑1 (MQ=255)
aCATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg > 2:2995095/1‑93 (MQ=255)
cATATATGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 2:6151084/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 2:3593355/93‑1 (MQ=255)
tatatGGCAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa > 2:3746387/1‑93 (MQ=255)
atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 2:709481/93‑1 (MQ=255)
atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 1:4075797/93‑1 (MQ=255)
atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt > 2:572437/1‑93 (MQ=255)
atatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt < 1:3039702/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:2637307/93‑1 (MQ=255)
tatGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 1:451837/93‑1 (MQ=255)
atGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 2:5821227/93‑1 (MQ=255)
atGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 1:1583076/93‑1 (MQ=255)
atGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 2:4920529/93‑1 (MQ=255)
tGGCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 2:2527709/93‑1 (MQ=255)
ggCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 2:6299508/93‑1 (MQ=255)
ggCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt > 2:3080812/1‑93 (MQ=255)
gCAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta > 2:4028089/1‑93 (MQ=255)
cAAAAGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 2:1011353/1‑93 (MQ=255)
cAAAAGCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat > 2:644613/1‑93 (MQ=255)
aaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt < 1:4021774/93‑1 (MQ=255)
aaaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt > 1:3665878/1‑93 (MQ=255)
aaGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt < 1:2025517/93‑1 (MQ=255)
aGCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta < 2:579905/93‑1 (MQ=255)
gCCCGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 1:2590033/1‑93 (MQ=255)
gCCCGGAAAATCC‑GGG‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat > 2:6025981/1‑93 (MQ=255)
cccGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:428894/93‑1 (MQ=255)
ccGGAAAATCCGG‑G‑‑CTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:6126204/1‑93 (MQ=255)
|
AGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑G‑‑C‑TCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > NC_000913/3957471‑3957626
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCTG‑‑CTCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > NC_000913/3957478‑3957641
|
TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGG < SRR4302534.2062500/94‑1 (MQ=60)
CCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGA < SRR4302534.6190444/94‑1 (MQ=60)
CGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAG < SRR4302534.795019/94‑1 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAA < SRR4302534.3996831/94‑1 (MQ=60)
CAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAA > SRR4302534.5248966/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAA > SRR4302534.4512416/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGACCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAA > SRR4302534.3971122/1‑94 (MQ=60)
AGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATTGGAAAAGCCCGGAAAATCCGGGCTTCGCAGGAC‑CCTCAAGGGGAGAAA > SRR4302534.1196732/1‑94 (MQ=55)
GATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAA > SRR4302534.6329751/1‑94 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACT < SRR4302534.3472199/94‑1 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACT > SRR4302534.4410637/1‑94 (MQ=60)
TGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACT > SRR4302534.3096812/1‑94 (MQ=60)
GCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTT > SRR4302534.1681857/1‑94 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTA < SRR4302534.845841/94‑1 (MQ=60)
CTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTA > SRR4302534.49284/1‑94 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCCAGGGGAGGAAACTTAG > SRR4302534.527097/1‑94 (MQ=60)
TAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAG > SRR4302534.1897601/1‑94 (MQ=60)
AACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGG > SRR4302534.3545891/1‑94 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGGAAACTTAGGG > SRR4302534.6069175/1‑94 (MQ=60)
ACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGG < SRR4302534.701958/94‑1 (MQ=60)
TAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCT < SRR4302534.3789664/94‑1 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302534.4109805/94‑1 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302534.3655563/94‑1 (MQ=60)
ATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCT < SRR4302534.3981015/94‑1 (MQ=60)
TTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTA > SRR4302534.3606222/1‑94 (MQ=60)
TTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTA < SRR4302534.4778077/94‑1 (MQ=60)
TGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGGCTCTAT > SRR4302534.1309765/1‑94 (MQ=60)
GTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATG < SRR4302534.4688113/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG < SRR4302534.486867/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG < SRR4302534.3071325/94‑1 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG > SRR4302534.388686/1‑94 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG > SRR4302534.3113374/1‑94 (MQ=60)
CAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGG > SRR4302534.6217582/1‑94 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302534.4214230/94‑1 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302534.5549730/94‑1 (MQ=60)
GTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302534.593891/94‑1 (MQ=60)
GTCAGGGAGGGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCT < SRR4302534.2612832/94‑1 (MQ=60)
TCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTA < SRR4302534.3362818/94‑1 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302534.1353947/1‑94 (MQ=60)
CAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAC > SRR4302534.1935269/1‑94 (MQ=60)
GGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAA > SRR4302534.5431166/1‑94 (MQ=60)
GAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAG < SRR4302534.863313/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCGAGGAAAATCCGGGTTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC < SRR4302534.3558456/94‑1 (MQ=60)
GTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTC < SRR4302534.5228904/94‑1 (MQ=60)
TGGCGGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCA < SRR4302534.2406193/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302534.1965628/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302534.350022/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302534.4251174/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA < SRR4302534.5529916/94‑1 (MQ=60)
CTGGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTA > SRR4302534.6612174/1‑94 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302534.1039809/94‑1 (MQ=60)
GGTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATC < SRR4302534.4202225/94‑1 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG > SRR4302534.5991848/1‑94 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG < SRR4302534.1394588/94‑1 (MQ=60)
GTACATATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCG < SRR4302534.1516317/94‑1 (MQ=60)
TATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAT < SRR4302534.4406000/94‑1 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG < SRR4302534.4185181/94‑1 (MQ=60)
ATATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATG < SRR4302534.3119418/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302534.5583095/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302534.2707078/94‑1 (MQ=60)
TATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGG < SRR4302534.463282/94‑1 (MQ=60)
ATGGCAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGT < SRR4302534.1624482/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT < SRR4302534.414899/94‑1 (MQ=60)
CAAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATT > SRR4302534.783678/1‑94 (MQ=60)
AAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT > SRR4302534.3764399/1‑94 (MQ=60)
AAAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTT < SRR4302534.3819440/94‑1 (MQ=60)
AAAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTT < SRR4302534.4129597/94‑1 (MQ=60)
AAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTA < SRR4302534.2078503/94‑1 (MQ=60)
AAGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTA > SRR4302534.1655723/1‑94 (MQ=60)
AGCCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTAT > SRR4302534.2658596/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302534.4542892/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG > SRR4302534.6292833/1‑94 (MQ=60)
CCCGGAAAATCCGGGCTTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTG < SRR4302534.439843/94‑1 (MQ=60)
cggaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC > SRR4302534.2834157/16‑94 (MQ=60)
cggaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTC > SRR4302534.2297069/16‑94 (MQ=60)
gaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAA < SRR4302534.1118955/81‑1 (MQ=60)
gaaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAA > SRR4302534.184301/14‑94 (MQ=60)
aaaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAAT > SRR4302534.391082/13‑94 (MQ=60)
aaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302534.5753777/12‑94 (MQ=60)
aaatccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATT > SRR4302534.6553541/12‑94 (MQ=60)
atccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTA < SRR4302534.2227626/85‑1 (MQ=60)
tccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT < SRR4302534.925338/86‑1 (MQ=60)
tccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTAT > SRR4302534.2259371/9‑94 (MQ=60)
ccgggctTCGCAGG‑TGCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG > SRR4302534.4025811/8‑94 (MQ=60)
ccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG > SRR4302534.3514591/8‑94 (MQ=60)
ccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302534.2483870/87‑1 (MQ=60)
ccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG < SRR4302534.4131458/87‑1 (MQ=60)
ccgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATG > SRR4302534.4888764/8‑94 (MQ=60)
cgggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGA < SRR4302534.2821760/88‑1 (MQ=60)
gggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG > SRR4302534.3108436/6‑94 (MQ=60)
gggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG > SRR4302534.759359/6‑94 (MQ=60)
gggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG < SRR4302534.846092/89‑1 (MQ=60)
gggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAG > SRR4302534.1739537/6‑94 (MQ=60)
ggctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGC < SRR4302534.5782844/90‑1 (MQ=60)
ctTCGCAGG‑TCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA < SRR4302534.1764753/92‑1 (MQ=60)
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TCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCTG‑‑CTCGCAGG‑T‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGA > NC_000913/3957478‑3957641
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
