Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,302,782	A→G	N2S (AAC→AGC)	oppD →	OppD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,302,782	0	A	G	99.6%	847.2 / NA	234	N2S (AAC→AGC)	oppD	OppD
Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (144/89); minor base T (1/0); total (145/89)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 238 total aligned reads displayed.

CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC  >  NC_000913/1302692‑1302871

cTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCg                                                                                         >  1:2816768/1‑93 (MQ=255)

 tCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGt                                                                                        >  2:5201095/1‑93 (MQ=255)

   gtggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTaa                                                                                      >  1:5269587/1‑93 (MQ=255)

   gtggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTaa                                                                                      >  1:4496181/1‑93 (MQ=255)

     ggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAtt                                                                                    >  1:1152879/1‑93 (MQ=255)

     ggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAtt                                                                                    >  1:40833/1‑93 (MQ=255)

     ggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAtt                                                                                    <  2:4183471/93‑1 (MQ=255)

      gtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTg                                                                                   >  1:5671041/1‑93 (MQ=255)

      gtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTg                                                                                   >  1:3961925/1‑93 (MQ=255)

      gtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTg                                                                                   <  1:357738/93‑1 (MQ=255)

      gtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTg                                                                                   <  2:2248972/93‑1 (MQ=255)

       tgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGa                                                                                  >  1:1109382/1‑93 (MQ=255)

         aCGGTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAAATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaaa                                                                                <  2:2198093/93‑1 (MQ=255)

         aCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaaa                                                                                <  1:3064545/93‑1 (MQ=255)

         aCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaaa                                                                                >  2:5510738/1‑93 (MQ=255)

         aCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaaa                                                                                >  2:1230291/1‑93 (MQ=255)

         aCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaaa                                                                                <  1:1710093/93‑1 (MQ=255)

          cGCTTTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAc                                                                               <  1:4707863/93‑1 (MQ=255)

          cGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAc                                                                               >  1:5866890/1‑93 (MQ=255)

           gCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACt                                                                              >  2:4377385/1‑93 (MQ=255)

           gCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACt                                                                              >  1:394202/1‑93 (MQ=255)

            cTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTg                                                                             >  1:5507497/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGGGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            >  2:3802538/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTACGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            >  2:2583512/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTGATTGAAACTGc                                                                            >  1:2242023/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            <  1:2546713/93‑1 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            >  2:1684766/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            >  1:2000338/1‑93 (MQ=255)

               ttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCac                                                                          >  2:1347765/1‑92 (MQ=255)

               ttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCaa                                                                          >  2:5265998/1‑93 (MQ=255)

                tttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAc                                                                         <  1:1786149/93‑1 (MQ=255)

                tttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAc                                                                         >  2:5952814/1‑93 (MQ=255)

                  tgtttCAACTTTATCGGCGATGGCTTGCGTGATGCGCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGCAATTGAAACTGCAACtg                                                                       >  1:6082770/1‑93 (MQ=255)

                      tCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGcc                                                                   >  1:3850063/1‑93 (MQ=255)

                       cAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCg                                                                  <  2:3891378/93‑1 (MQ=255)

                        aaCTTTATCGGCCATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGc                                                                 <  1:812424/93‑1 (MQ=255)

                         aCTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCt                                                                <  2:2326190/93‑1 (MQ=255)

                          cTTTATCGGCGATGGCTTGCGTGTTGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTc                                                               <  1:3485080/93‑1 (MQ=255)

                          cTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTc                                                               <  1:5789528/93‑1 (MQ=255)

                            ttATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGc                                                             >  2:3839453/1‑93 (MQ=255)

                              ttCGGCGATGGCTGGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcac                                                           <  2:3625208/92‑1 (MQ=255)

                              aTCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcac                                                           <  2:5888175/93‑1 (MQ=255)

                               tCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcaca                                                          <  1:3536509/93‑1 (MQ=255)

                               tCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcaca                                                          >  1:2518835/1‑93 (MQ=255)

                                 ggCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaac                                                        <  1:4868257/93‑1 (MQ=255)

                                  gCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaaca                                                       <  2:4839584/93‑1 (MQ=255)

                                   cGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaa                                                      >  1:4734649/1‑93 (MQ=255)

                                      tGNCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGNTCGCACAACAACAg                                                   >  1:2709437/1‑93 (MQ=255)

                                      tGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAg                                                   >  2:5979418/1‑93 (MQ=255)

                                      tGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAg                                                   <  2:1077875/93‑1 (MQ=255)

                                      tGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAg                                                   <  1:690874/93‑1 (MQ=255)

                                      tGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAg                                                   <  2:5168658/93‑1 (MQ=255)

                                       ggCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAgg                                                  >  2:3972055/1‑93 (MQ=255)

                                         cTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCt                                                >  2:4311817/1‑93 (MQ=255)

                                          ttGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTg                                               >  2:3563986/1‑93 (MQ=255)

                                           tGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAACCTGCAACTGTGCCGCTCGCACAACAACAGGCTGa                                              <  1:1010553/93‑1 (MQ=255)

                                           tGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGa                                              >  2:2897480/1‑93 (MQ=255)

                                           tGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGa                                              <  1:2094841/93‑1 (MQ=255)

                                            gCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGAc                                             <  2:705038/93‑1 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  2:5706619/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  1:1372374/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  2:1510648/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  2:1801632/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGAACGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  1:426232/1‑93 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     >  1:1478516/1‑93 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     >  1:5315273/1‑93 (MQ=255)

                                                     ccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgctg                                    >  1:3640538/1‑93 (MQ=255)

                                                      cTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGa                                   <  2:3709730/93‑1 (MQ=255)

                                                      cTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGa                                   >  1:400454/1‑93 (MQ=255)

                                                      cTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGa                                   <  2:127680/93‑1 (MQ=255)

                                                      cTCGACCCGAAAGATCGTTAAGGAGGGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGa                                   >  2:1874584/1‑93 (MQ=255)

                                                       tCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGaa                                  <  1:4307228/93‑1 (MQ=255)

                                                       tCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGaa                                  >  1:5965925/1‑93 (MQ=255)

                                                       tCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGaa                                  >  1:3187849/1‑93 (MQ=255)

                                                        cGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAc                                 >  2:5328177/1‑93 (MQ=255)

                                                          aCCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACgg                               >  2:1550112/1‑92 (MQ=255)

                                                          aCCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGt                               >  1:4205965/1‑93 (MQ=255)

                                                            ccGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGa                             >  2:2636990/1‑93 (MQ=255)

                                                            ccGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGa                             >  2:3983352/1‑93 (MQ=255)

                                                             cGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGaa                            >  2:4888532/1‑93 (MQ=255)

                                                              gAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGaaa                           <  2:2957713/93‑1 (MQ=255)

                                                                 aGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAt                        >  1:5194369/1‑93 (MQ=255)

                                                                  gATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAtt                       >  2:2061909/1‑93 (MQ=255)

                                                                  gATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAtt                       <  2:4928058/93‑1 (MQ=255)

                                                                  gATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAtt                       <  2:3049296/93‑1 (MQ=255)

                                                                    tCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTg                     >  2:2382473/1‑93 (MQ=255)

                                                                       ttAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgt                  <  1:5089108/93‑1 (MQ=255)

                                                                        tAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGTTTTGCttg                 >  1:4288244/1‑93 (MQ=255)

                                                                          aGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTc               >  1:2895450/1‑93 (MQ=255)

                                                                             aGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAcc            >  2:3337310/1‑93 (MQ=255)

                                                                               tGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCtt          <  1:1207624/93‑1 (MQ=255)

                                                                                   gCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGt      <  2:3213065/93‑1 (MQ=255)

                                                                                    ccATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTa     >  2:1018265/1‑93 (MQ=255)

                                                                                    ccATGAGCGTAAGTTAAACTGCAACGGAGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTa     <  2:4739951/93‑1 (MQ=255)

                                                                                     cATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAc    >  1:5207457/1‑93 (MQ=255)

                                                                                      aTGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAcc   >  1:5011073/1‑93 (MQ=255)

                                                                                      aTGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAcc   >  1:2069327/1‑93 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAccc  >  1:769623/1‑93 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAccc  >  2:3005168/1‑93 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGGGAAAGATTTGCGTGTCTACTTTAGTAccc  >  2:4610011/1‑93 (MQ=255)

CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC  >  NC_000913/1302692‑1302871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  NC_000913/1302689‑1302874

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAG                                                                                              <  SRR4302532.1141480/94‑1 (MQ=60)

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAG                                                                                              <  SRR4302532.2351433/94‑1 (MQ=60)

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAG                                                                                              <  SRR4302532.1247834/94‑1 (MQ=60)

 TCCTCGTGGTGGCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGC                                                                                             <  SRR4302532.2236293/94‑1 (MQ=60)

 TCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGC                                                                                             <  SRR4302532.2236294/94‑1 (MQ=60)

  CCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCG                                                                                            >  SRR4302532.2911048/1‑94 (MQ=60)

   CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           >  SRR4302532.452084/1‑94 (MQ=60)

   CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           >  SRR4302532.5237859/1‑94 (MQ=60)

   CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           <  SRR4302532.1241686/94‑1 (MQ=60)

     CGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAA                                                                                         >  SRR4302532.5451294/1‑94 (MQ=60)

     CGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAA                                                                                         >  SRR4302532.4649673/1‑94 (MQ=60)

       TGGTGACGCTGTTTTGTTTCAACTTTATCGGTGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       >  SRR4302532.42305/1‑94 (MQ=60)

       TGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       >  SRR4302532.1191342/1‑94 (MQ=60)

       TGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       >  SRR4302532.42306/1‑94 (MQ=60)

       TGGTGACGCGGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       <  SRR4302532.2955299/94‑1 (MQ=60)

       TGGTGACGCAGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       >  SRR4302532.4758436/1‑94 (MQ=60)

        GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTG                                                                                      >  SRR4302532.5868839/1‑94 (MQ=60)

        GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTG                                                                                      >  SRR4302532.4095411/1‑94 (MQ=60)

        GGTGACGCTGTTTTGTTTCAACTTTATCAGCATTGACTTGCGGGATGCCCTCGACCCGAAAGATCGTTAAGGCGTGCAGCCATGAGCGTAATTG                                                                                      >  SRR4302532.4077987/1‑94 (MQ=60)

         GTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGA                                                                                     <  SRR4302532.370129/94‑1 (MQ=60)

         GTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGA                                                                                     >  SRR4302532.1146474/1‑94 (MQ=60)

          gtacggTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGGCCGGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAA                                                                                    <  SRR4302532.1469473/88‑1 (MQ=60)

            ACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAC                                                                                  >  SRR4302532.6070242/1‑94 (MQ=60)

            ACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAC                                                                                  <  SRR4302532.3165781/94‑1 (MQ=60)

            ACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAC                                                                                  <  SRR4302532.1767741/94‑1 (MQ=60)

             CGCTTTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 <  SRR4302532.4868501/94‑1 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 >  SRR4302532.407998/1‑94 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 >  SRR4302532.407997/1‑94 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 >  SRR4302532.3168471/1‑94 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 >  SRR4302532.371610/1‑94 (MQ=60)

              GCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTG                                                                                >  SRR4302532.5698545/1‑94 (MQ=60)

               CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTGATTGAAACTGC                                                                               >  SRR4302532.2316429/1‑94 (MQ=60)

               CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               >  SRR4302532.2067001/1‑94 (MQ=60)

               CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               >  SRR4302532.2689210/1‑94 (MQ=60)

                TGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCA                                                                              <  SRR4302532.2631640/94‑1 (MQ=60)

                 GTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAA                                                                             <  SRR4302532.6097267/94‑1 (MQ=60)

                  TTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAC                                                                            <  SRR4302532.2881549/94‑1 (MQ=60)

                   TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           <  SRR4302532.1168940/94‑1 (MQ=60)

                   TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           <  SRR4302532.1845853/94‑1 (MQ=60)

                   TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           >  SRR4302532.2975445/1‑94 (MQ=60)

                    TTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCGCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGCAATTGAAACTGCAACTG                                                                          >  SRR4302532.6292820/1‑94 (MQ=60)

                    TTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTG                                                                          <  SRR4302532.4051435/94‑1 (MQ=60)

                     TGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGT                                                                         >  SRR4302532.5342223/1‑94 (MQ=60)

                        TTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCC                                                                      >  SRR4302532.5015175/1‑94 (MQ=60)

                        TTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCC                                                                      >  SRR4302532.3980062/1‑94 (MQ=60)

                         TCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCG                                                                     <  SRR4302532.6055106/94‑1 (MQ=60)

                          CAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGC                                                                    >  SRR4302532.919824/1‑94 (MQ=60)

                           AACTTTATCGGCCATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCT                                                                   <  SRR4302532.840144/94‑1 (MQ=60)

                            ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTC                                                                  <  SRR4302532.1949178/94‑1 (MQ=60)

                            ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTC                                                                  >  SRR4302532.3756070/1‑94 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGTTGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 <  SRR4302532.3601825/94‑1 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 >  SRR4302532.4203157/1‑94 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 <  SRR4302532.5990830/94‑1 (MQ=60)

                               TTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCA                                                               >  SRR4302532.4637166/1‑94 (MQ=60)

                                TATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCAC                                                              >  SRR4302532.3433684/1‑94 (MQ=60)

                                TATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCAC                                                              >  SRR4302532.164942/1‑94 (MQ=60)

                                 ATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGGCGCTCGGACA                                                             >  SRR4302532.1804499/1‑94 (MQ=60)

                                 ATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACA                                                             >  SRR4302532.2602880/1‑94 (MQ=60)

                                  TCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAA                                                            <  SRR4302532.3654839/94‑1 (MQ=60)

                                   CGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAAC                                                           >  SRR4302532.5862372/1‑94 (MQ=60)

                                   CGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGGTAAGGAGCGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAAC                                                           >  SRR4302532.1270480/1‑94 (MQ=60)

                                    GGCGATGGCTTGCGTGATGCCCTCGACCCGATAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCCCTCGCACCACA                                                          >  SRR4302532.4447525/1‑94 (MQ=60)

                                    GGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACA                                                          <  SRR4302532.5035652/94‑1 (MQ=60)

                                     GCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAA                                                         >  SRR4302532.4896272/1‑94 (MQ=60)

                                       GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       <  SRR4302532.1888305/94‑1 (MQ=60)

                                       GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       <  SRR4302532.4356458/94‑1 (MQ=60)

                                       GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       <  SRR4302532.3052743/94‑1 (MQ=60)

                                        ATGNCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGNTCGCACAACAACAG                                                      >  SRR4302532.2800560/1‑94 (MQ=60)

                                         TGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGG                                                     <  SRR4302532.714590/94‑1 (MQ=60)

                                          GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    <  SRR4302532.1761154/94‑1 (MQ=60)

                                              TGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAACCTGCAACTGTGCCGCTCGCACAACAACAGGCTGAC                                                <  SRR4302532.1044905/94‑1 (MQ=60)

                                              TGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGAC                                                <  SRR4302532.6252732/94‑1 (MQ=60)

                                              TGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGAC                                                <  SRR4302532.2164718/94‑1 (MQ=60)

                                              TGCGTGATGCCCGCGACCCTAAAGATCGGTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGAC                                                <  SRR4302532.5024029/94‑1 (MQ=60)

                                                  TGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAC                                            >  SRR4302532.1418351/1‑94 (MQ=60)

                                                  TGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAC                                            >  SRR4302532.36731/1‑94 (MQ=60)

                                                  TGATGCCCTCGACCCGAAAGAACGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAC                                            >  SRR4302532.440991/1‑94 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302532.5386007/94‑1 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        <  SRR4302532.734957/94‑1 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302532.5499138/1‑94 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        <  SRR4302532.5222206/94‑1 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302532.5044742/1‑94 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302532.1528349/1‑94 (MQ=60)

                                                       CCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACCACACCAGGCTGACGCACTGCTG                                       >  SRR4302532.2232662/1‑94 (MQ=60)

                                                       CCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTG                                       >  SRR4302532.3762686/1‑94 (MQ=60)

                                                        CCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGA                                      <  SRR4302532.2650162/94‑1 (MQ=60)

                                                        CCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGA                                      >  SRR4302532.414437/1‑94 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     >  SRR4302532.3293687/1‑94 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     >  SRR4302532.6172207/1‑94 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     <  SRR4302532.5435591/94‑1 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     <  SRR4302532.1449152/94‑1 (MQ=60)

                                                          TCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAC                                    <  SRR4302532.4452849/94‑1 (MQ=60)

                                                          TCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAC                                    <  SRR4302532.2203703/94‑1 (MQ=60)

                                                            GACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGT                                  >  SRR4302532.4347153/1‑94 (MQ=60)

                                                             ACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTG                                 <  SRR4302532.3621468/94‑1 (MQ=60)

                                                             ACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTG                                 >  SRR4302532.2557569/1‑94 (MQ=60)

                                                               CCGAAAGTTCGTTAAGTAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               <  SRR4302532.4095947/94‑1 (MQ=60)

                                                               CCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               >  SRR4302532.6023007/1‑94 (MQ=60)

                                                               CCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               <  SRR4302532.639711/94‑1 (MQ=60)

                                                               CCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               <  SRR4302532.639714/94‑1 (MQ=60)

                                                                CGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAA                              >  SRR4302532.1357423/1‑94 (MQ=60)

                                                                 GAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAG                             <  SRR4302532.3406557/94‑1 (MQ=60)

                                                                   AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           >  SRR4302532.5901064/1‑94 (MQ=60)

                                                                   AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           >  SRR4302532.5373409/1‑94 (MQ=60)

                                                                    AGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATT                          <  SRR4302532.5436739/94‑1 (MQ=60)

                                                                    AGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATT                          >  SRR4302532.823506/1‑94 (MQ=60)

                                                                      ATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTCG                        <  SRR4302532.3768997/94‑1 (MQ=60)

                                                                        CGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCG                      >  SRR4302532.4869508/1‑94 (MQ=60)

                                                                          TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGTTTTGCTTG                    >  SRR4302532.4432896/1‑94 (MQ=60)

                                                                          TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTG                    <  SRR4302532.5264092/94‑1 (MQ=60)

                                                                          TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTG                    >  SRR4302532.5464752/1‑94 (MQ=60)

                                                                          TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTG                    >  SRR4302532.4432894/1‑94 (MQ=60)

                                                                           TAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGT                   >  SRR4302532.4295701/1‑94 (MQ=60)

                                                                           TAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGT                   >  SRR4302532.800939/1‑94 (MQ=60)

                                                                            AAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTC                  >  SRR4302532.2992124/1‑94 (MQ=60)

                                                                             AGGAGTGCAGCCATGAGCGTAATTGAATCTGCAACTGTGCAGCTCGCACAACAACAGGCTGACGCACTGCTGAACATGAAAGATTTGCGTGTCA                 <  SRR4302532.5179931/94‑1 (MQ=60)

                                                                                AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCT              >  SRR4302532.4085294/1‑94 (MQ=60)

                                                                                AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCT              <  SRR4302532.440777/94‑1 (MQ=60)

                                                                                AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCT              <  SRR4302532.2153511/94‑1 (MQ=60)

                                                                                AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCT              >  SRR4302532.2124799/1‑94 (MQ=60)

                                                                                 GTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTT             >  SRR4302532.1201763/1‑94 (MQ=60)

                                                                                  TGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTT            <  SRR4302532.1248044/94‑1 (MQ=60)

                                                                                       CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       >  SRR4302532.5691713/1‑94 (MQ=60)

                                                                                       CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       >  SRR4302532.5387035/1‑94 (MQ=60)

                                                                                        CATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACC      >  SRR4302532.5182833/1‑94 (MQ=60)

                                                                                        CATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACC      <  SRR4302532.1133691/94‑1 (MQ=60)

                                                                                        CATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACC      >  SRR4302532.2138281/1‑94 (MQ=60)

                                                                                         ATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC     >  SRR4302532.2615097/1‑94 (MQ=60)

                                                                                         ATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC     >  SRR4302532.2221703/1‑94 (MQ=60)

                                                                                         ATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC     >  SRR4302532.796192/1‑94 (MQ=60)

                                                                                         ATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC     >  SRR4302532.5784986/1‑94 (MQ=60)

                                                                                           GAGCGTAATTGAAGCTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCG   <  SRR4302532.2623060/94‑1 (MQ=60)

                                                                                           GAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCG   <  SRR4302532.1177873/94‑1 (MQ=60)

                                                                                            AGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  <  SRR4302532.1265026/94‑1 (MQ=60)

                                                                                            AGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  SRR4302532.3999340/1‑94 (MQ=60)

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  NC_000913/1302689‑1302874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`