Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,335,418	A→G	S522G (AGC→GGC)	acnA →	aconitate hydrase 1

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,335,418	0	A	G	100.0%	701.1 / NA	197	S522G (AGC→GGC)	acnA	aconitate hydrase 1
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (97/100); total (97/100)

Only 100 of 219 total aligned reads displayed.

CTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAAGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCG  >  NC_000913/1335328‑1335507

cTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGc                                                                                         <  1:4016841/93‑1 (MQ=255)

 tGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCACTCAAAAAAGGCg                                                                                        >  1:478625/1‑93 (MQ=255)

 tGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCg                                                                                        >  2:2034493/1‑93 (MQ=255)

 tGGGGTTTAACCTTGTGGGATACGGTTGGACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAACCAAAAAAGGca                                                                                        >  2:695947/1‑92 (MQ=255)

  ggggTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGa                                                                                       <  2:3180430/93‑1 (MQ=255)

   gggTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAt                                                                                      <  1:4571826/93‑1 (MQ=255)

   gggTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAt                                                                                      <  2:5579809/93‑1 (MQ=255)

   gggTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAt                                                                                      >  1:2087126/1‑93 (MQ=255)

    ggTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAtt                                                                                     <  1:5420971/93‑1 (MQ=255)

     gTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAttt                                                                                    >  2:3234465/1‑93 (MQ=255)

      tttAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTa                                                                                   >  1:3690092/1‑93 (MQ=255)

      tttAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTa                                                                                   <  1:5703130/93‑1 (MQ=255)

        tAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAAc                                                                                 >  2:2842302/1‑93 (MQ=255)

        tAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAAc                                                                                 <  2:630404/93‑1 (MQ=255)

        tAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAAc                                                                                 <  1:1417484/93‑1 (MQ=255)

        tAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAAc                                                                                 <  1:1214309/93‑1 (MQ=255)

           ccTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGt                                                                              >  2:3322778/1‑93 (MQ=255)

           ccTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGt                                                                              <  2:1101456/93‑1 (MQ=255)

            cTTGTGGGATGCGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCTTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTc                                                                             <  1:2708888/93‑1 (MQ=255)

            cTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTc                                                                             <  1:4229137/93‑1 (MQ=255)

            cTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTc                                                                             <  2:584415/93‑1 (MQ=255)

             ttGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcg                                                                            >  1:3660874/1‑93 (MQ=255)

             ttGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcg                                                                            >  1:3943840/1‑93 (MQ=255)

              tgtgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcgg                                                                           <  2:2608185/93‑1 (MQ=255)

               gtgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggt                                                                          <  2:4840540/93‑1 (MQ=255)

               gtgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggt                                                                          <  2:2523204/93‑1 (MQ=255)

               gtgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggt                                                                          <  1:782455/93‑1 (MQ=255)

               gtgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggg                                                                          >  2:237410/1‑92 (MQ=255)

                tgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtg                                                                         >  2:1141125/1‑93 (MQ=255)

                tgGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtg                                                                         >  1:407005/1‑93 (MQ=255)

                 gggATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgc                                                                        <  2:4145810/93‑1 (MQ=255)

                 gggATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGCcggtgg                                                                        >  2:1868972/1‑92 (MQ=255)

                     tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgcggtg                                                                    >  2:3299733/1‑93 (MQ=255)

                     tACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTcggtgcggtg                                                                    >  2:2640963/1‑93 (MQ=255)

                       cGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCt                                                                  <  2:3702321/93‑1 (MQ=255)

                        ggTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTg                                                                 <  1:527416/93‑1 (MQ=255)

                        ggTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTg                                                                 <  1:3422584/93‑1 (MQ=255)

                         gTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGGTTTAACCGTCGGTGCGGTGCTGt                                                                >  1:3497147/1‑93 (MQ=255)

                          ttGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTc                                                               <  1:4399460/93‑1 (MQ=255)

                          ttGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTc                                                               >  2:51689/1‑93 (MQ=255)

                          ttGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTc                                                               <  1:61441/93‑1 (MQ=255)

                           tGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTcc                                                              <  1:1092587/93‑1 (MQ=255)

                           tGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTcc                                                              <  1:5186718/93‑1 (MQ=255)

                           tGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTcc                                                              <  1:503687/93‑1 (MQ=255)

                           tGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTcc                                                              <  2:4569005/93‑1 (MQ=255)

                             tACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCgg                                                            <  2:550010/93‑1 (MQ=255)

                             tACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCgg                                                            >  1:1730967/1‑93 (MQ=255)

                              accaccTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGc                                                           <  2:3531881/93‑1 (MQ=255)

                                caccTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCaa                                                         >  2:860869/1‑93 (MQ=255)

                                 cccTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAAc                                                        <  2:1210769/92‑1 (MQ=255)

                                 accTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAAc                                                        >  1:1582196/1‑93 (MQ=255)

                                 accTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAAc                                                        >  2:5705104/1‑93 (MQ=255)

                                     gTATTGGTATCTCTGGGCAGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTa                                                    <  2:306/93‑1 (MQ=255)

                                            tAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGa                                             >  2:4982246/1‑93 (MQ=255)

                                            tAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGa                                             <  1:4890581/93‑1 (MQ=255)

                                             aaCTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGaa                                            <  2:2172508/93‑1 (MQ=255)

                                             aaCGCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGaa                                            <  2:390568/93‑1 (MQ=255)

                                                      ccGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatc                                   <  2:4336686/93‑1 (MQ=255)

                                                       cGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatcc                                  <  1:5966301/93‑1 (MQ=255)

                                                       cGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatcc                                  >  2:2741298/1‑93 (MQ=255)

                                                        gCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatcca                                 >  2:5605184/1‑93 (MQ=255)

                                                        gCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatcca                                 <  1:2292661/93‑1 (MQ=255)

                                                         cTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatccat                                <  2:2248902/93‑1 (MQ=255)

                                                          tGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTatccatc                               <  1:603826/93‑1 (MQ=255)

                                                              cGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCt                           <  2:6012330/93‑1 (MQ=255)

                                                               gATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTg                          >  2:5035130/1‑93 (MQ=255)

                                                               gATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTg                          <  2:1541972/93‑1 (MQ=255)

                                                               gATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTg                          <  2:4279707/93‑1 (MQ=255)

                                                                aTCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTgg                         >  1:2041549/1‑93 (MQ=255)

                                                                 tCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGTTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGt                        >  1:918813/1‑93 (MQ=255)

                                                                 tCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTTCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGt                        >  1:4742983/1‑93 (MQ=255)

                                                                 tCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGt                        <  1:289329/93‑1 (MQ=255)

                                                                 tCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGt                        <  1:2669763/93‑1 (MQ=255)

                                                                  ccTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGtt                       >  2:4794647/1‑93 (MQ=255)

                                                                  ccTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGtt                       >  2:492909/1‑93 (MQ=255)

                                                                    tATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATTCGCTGGTTaa                     >  1:3713040/1‑93 (MQ=255)

                                                                    tATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTaa                     <  1:4279950/93‑1 (MQ=255)

                                                                      tCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTaaaa                   >  2:5756086/1‑93 (MQ=255)

                                                                      tCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTaaaa                   <  1:2380249/93‑1 (MQ=255)

                                                                       cGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaac                  <  2:4168251/93‑1 (MQ=255)

                                                                        gAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaact                 >  2:1915302/1‑93 (MQ=255)

                                                                         aaaCGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaacta                >  1:5644812/1‑93 (MQ=255)

                                                                          aaCGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaactaa               <  2:1002825/93‑1 (MQ=255)

                                                                          aaCGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaactaa               <  2:1898259/93‑1 (MQ=255)

                                                                          aaCGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaactaa               <  1:2204515/93‑1 (MQ=255)

                                                                           aCGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaactaac              <  1:5947542/93‑1 (MQ=255)

                                                                            cGGCAATCAAAAAAGGCGATTAAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAaactaact             <  2:2146116/93‑1 (MQ=255)

                                                                             ggCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAActg            >  1:3214743/1‑93 (MQ=255)

                                                                             ggCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAActg            >  1:5537574/1‑93 (MQ=255)

                                                                                 aTCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAActggctg        <  1:1458128/93‑1 (MQ=255)

                                                                                  tCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAActggctgg       >  2:2314559/1‑93 (MQ=255)

                                                                                   cAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACtggctggc      <  2:4740518/93‑1 (MQ=255)

                                                                                    aaaaaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGcc     >  1:5829376/1‑93 (MQ=255)

                                                                                     aaaaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCt    <  1:4510623/93‑1 (MQ=255)

                                                                                     aaaaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCt    >  1:2758658/1‑93 (MQ=255)

                                                                                     aaaaagGCGATTTAACCGTCGGTGCAGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCt    >  1:719721/1‑93 (MQ=255)

                                                                                       aaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTcg  >  1:4454318/1‑93 (MQ=255)

                                                                                       aaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTcg  >  1:6075826/1‑93 (MQ=255)

                                                                                       aaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTcg  >  2:4044430/1‑93 (MQ=255)

                                                                                       aaagGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTcc  >  2:1626834/1‑92 (MQ=255)

CTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAAGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCG  >  NC_000913/1335328‑1335507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAAGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGCCGC  >  NC_000913/1335325‑1335511

GAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAG                                                                                               <  SRR4302532.3948103/94‑1 (MQ=60)

 AACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGG                                                                                              >  SRR4302532.2237307/1‑94 (MQ=60)

 AACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGG                                                                                              <  SRR4302532.4151559/94‑1 (MQ=60)

 AACTGGGGTTGAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGG                                                                                              <  SRR4302532.5623282/94‑1 (MQ=60)

   CTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCACTCAAAAAAGGCG                                                                                            >  SRR4302532.495310/1‑94 (MQ=60)

   CTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCG                                                                                            >  SRR4302532.176940/1‑94 (MQ=60)

   CTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCG                                                                                            <  SRR4302532.4152195/94‑1 (MQ=60)

     GGGGTTTGACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAT                                                                                          >  SRR4302532.6259039/1‑94 (MQ=60)

     GGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGAT                                                                                          >  SRR4302532.2156714/1‑94 (MQ=60)

      GGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATT                                                                                         <  SRR4302532.4727753/94‑1 (MQ=60)

       GGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTT                                                                                        <  SRR4302532.5608858/94‑1 (MQ=60)

       GGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTT                                                                                        >  SRR4302532.357190/1‑94 (MQ=60)

        GTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTA                                                                                       >  SRR4302532.3813994/1‑94 (MQ=60)

        GTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTA                                                                                       >  SRR4302532.4553870/1‑94 (MQ=60)

        GTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTA                                                                                       >  SRR4302532.4553871/1‑94 (MQ=60)

         TTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAA                                                                                      <  SRR4302532.5902004/94‑1 (MQ=60)

          TTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAAC                                                                                     <  SRR4302532.5671688/94‑1 (MQ=60)

           TAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACC                                                                                    <  SRR4302532.1465051/94‑1 (MQ=60)

           TAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACC                                                                                    <  SRR4302532.1254947/94‑1 (MQ=60)

           TAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACC                                                                                    >  SRR4302532.2232193/1‑94 (MQ=60)

               CTTGTGGGATGCGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCTTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                <  SRR4302532.2799986/94‑1 (MQ=60)

               CTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                >  SRR4302532.2133117/1‑94 (MQ=60)

               CTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                >  SRR4302532.4076735/1‑94 (MQ=60)

               CTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                >  SRR4302532.3783929/1‑94 (MQ=60)

               CTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                >  SRR4302532.3783785/1‑94 (MQ=60)

               CTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                <  SRR4302532.2799987/94‑1 (MQ=60)

               CTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCG                                                                                <  SRR4302532.4371106/94‑1 (MQ=60)

                 TGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGT                                                                              >  SRR4302532.4694147/1‑94 (MQ=60)

                  GTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCCAAAAAGGCGATTTAACCGTCGGTG                                                                             >  SRR4302532.421205/1‑94 (MQ=60)

                  GTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTG                                                                             <  SRR4302532.809343/94‑1 (MQ=60)

                  GTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTG                                                                             <  SRR4302532.4411469/94‑1 (MQ=60)

                     GGATACGGTTGTACCACCTGTATTCGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGG                                                                          <  SRR4302532.142960/94‑1 (MQ=60)

                           GGTTGTACCTCCTGTATTGGTAACTCTGGGCCGCTGCCCGATTCTATCGAAACGGCGATCAAATAAGGAGATTTAACCGTCGGTGCGGTGCTGT                                                                    >  SRR4302532.3916703/1‑94 (MQ=60)

                           GGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGGTTTAACCGTCGGTGCGGTGCTGT                                                                    >  SRR4302532.3614309/1‑94 (MQ=60)

                           GGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGT                                                                    <  SRR4302532.545819/94‑1 (MQ=60)

                           GGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGT                                                                    >  SRR4302532.621076/1‑94 (MQ=60)

                           GGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGT                                                                    <  SRR4302532.3537234/94‑1 (MQ=60)

                             TTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCC                                                                  <  SRR4302532.4549199/94‑1 (MQ=60)

                             TTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCC                                                                  <  SRR4302532.63645/94‑1 (MQ=60)

                              TGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCG                                                                 <  SRR4302532.521306/94‑1 (MQ=60)

                              TGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCG                                                                 <  SRR4302532.5365433/94‑1 (MQ=60)

                              TGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCG                                                                 <  SRR4302532.1129130/94‑1 (MQ=60)

                              TGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCG                                                                 <  SRR4302532.3517312/94‑1 (MQ=60)

                              TGTACCACCTGTATTGGTAACTCTGGGCCGCAGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCG                                                                 <  SRR4302532.521305/94‑1 (MQ=60)

                               GTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGG                                                                >  SRR4302532.1789229/1‑94 (MQ=60)

                               GTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGG                                                                <  SRR4302532.1535739/94‑1 (MQ=60)

                                  CCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAA                                                             >  SRR4302532.812025/1‑94 (MQ=60)

                                   CACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAAC                                                            >  SRR4302532.3817409/1‑94 (MQ=60)

                                   CACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAAC                                                            >  SRR4302532.1635758/1‑94 (MQ=60)

                                     CCTGTATTGGTAACTCTGAGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGGGCTGTCCGGAAACCA                                                          >  SRR4302532.6145239/1‑94 (MQ=60)

                                      CTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCTAAAAAGGCGATTTAACCGTCGGTGCGGTGGTGTCCGGCAACCGT                                                         >  SRR4302532.4855370/1‑94 (MQ=60)

                                      CTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGT                                                         >  SRR4302532.5401823/1‑94 (MQ=60)

                                      CTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGT                                                         >  SRR4302532.3446490/1‑94 (MQ=60)

                                       TGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTA                                                        <  SRR4302532.501966/94‑1 (MQ=60)

                                        GTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAA                                                       >  SRR4302532.1793367/1‑94 (MQ=60)

                                           TTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTT                                                    <  SRR4302532.2419906/94‑1 (MQ=60)

                                             GGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTG                                                  >  SRR4302532.4166244/1‑94 (MQ=60)

                                             GGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTG                                                  <  SRR4302532.4463108/94‑1 (MQ=60)

                                             GGTAACTCTGCGCCGCTGCATGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTATCCGTCGGTGCGGTGCTGTCCGGCAACCGGAACTTTG                                                  <  SRR4302532.767218/94‑1 (MQ=60)

                                               TAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAA                                                <  SRR4302532.5314270/94‑1 (MQ=60)

                                               TAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAA                                                <  SRR4302532.5058659/94‑1 (MQ=60)

                                               TAACTCTGGGCCAATGCCCGATCCTATCGAAACGGCAAACAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGACCGGCAACCGTAAGTTTGAA                                                <  SRR4302532.5516432/94‑1 (MQ=60)

                                               GAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAA                                                <  SRR4302532.4363341/94‑1 (MQ=60)

                                                 ACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGG                                              >  SRR4302532.1227011/1‑94 (MQ=60)

                                                  CTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGC                                             <  SRR4302532.763365/94‑1 (MQ=60)

                                                    CTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCG                                           >  SRR4302532.2747649/1‑94 (MQ=60)

                                                     TGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGT                                          <  SRR4302532.3076790/94‑1 (MQ=60)

                                                         CCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCC                                      >  SRR4302532.1487980/1‑94 (MQ=60)

                                                          CGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGTGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCA                                     <  SRR4302532.6347332/94‑1 (MQ=60)

                                                          CGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCA                                     <  SRR4302532.6172590/94‑1 (MQ=60)

                                                          CGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCA                                     <  SRR4302532.6172591/94‑1 (MQ=60)

                                                           GCTGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCAT                                    <  SRR4302532.2368765/94‑1 (MQ=60)

                                                             TGCCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCC                                  <  SRR4302532.624923/94‑1 (MQ=60)

                                                               CCCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGC                                >  SRR4302532.5541650/1‑94 (MQ=60)

                                                                CCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCT                               <  SRR4302532.231471/94‑1 (MQ=60)

                                                                CCGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCT                               >  SRR4302532.2772851/1‑94 (MQ=60)

                                                                 CGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTATCCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTG                              <  SRR4302532.5816101/94‑1 (MQ=60)

                                                                 CGATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGTTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTG                              <  SRR4302532.2537258/94‑1 (MQ=60)

                                                                  GATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGG                             <  SRR4302532.4942706/94‑1 (MQ=60)

                                                                  GATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGG                             >  SRR4302532.2109541/1‑94 (MQ=60)

                                                                   ATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGTTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGT                            >  SRR4302532.950255/1‑94 (MQ=60)

                                                                   ATCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTTCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGT                            >  SRR4302532.4904969/1‑94 (MQ=60)

                                                                    TCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTT                           <  SRR4302532.299308/94‑1 (MQ=60)

                                                                    TCCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTT                           <  SRR4302532.2759370/94‑1 (MQ=60)

                                                                    ACCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTT                           <  SRR4302532.4955111/94‑1 (MQ=60)

                                                                     CCTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTA                          >  SRR4302532.4626530/1‑94 (MQ=60)

                                                                      CTATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATTCGCTGGTTAA                         >  SRR4302532.3837668/1‑94 (MQ=60)

                                                                       TATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAA                        <  SRR4302532.4424108/94‑1 (MQ=60)

                                                                        ATCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAA                       >  SRR4302532.652516/1‑94 (MQ=60)

                                                                         TCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAAC                      >  SRR4302532.5638541/1‑94 (MQ=60)

                                                                         TCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAAC                      <  SRR4302532.286636/94‑1 (MQ=60)

                                                                         TCGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAAC                      <  SRR4302532.2459557/94‑1 (MQ=60)

                                                                          CGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACT                     >  SRR4302532.410241/1‑94 (MQ=60)

                                                                          CGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACT                     >  SRR4302532.4080030/1‑94 (MQ=60)

                                                                          CGAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACT                     <  SRR4302532.5943486/94‑1 (MQ=60)

                                                                           GAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTA                    <  SRR4302532.3731621/94‑1 (MQ=60)

                                                                           GAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTA                    >  SRR4302532.5841107/1‑94 (MQ=60)

                                                                           GAAACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTA                    >  SRR4302532.5841108/1‑94 (MQ=60)

                                                                             AACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAAC                  <  SRR4302532.2277851/94‑1 (MQ=60)

                                                                              ACGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACT                 <  SRR4302532.6153315/94‑1 (MQ=60)

                                                                               CGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTG                >  SRR4302532.3321489/1‑94 (MQ=60)

                                                                               CGGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTG                >  SRR4302532.5729758/1‑94 (MQ=60)

                                                                                GGCAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGG               <  SRR4302532.1933093/94‑1 (MQ=60)

                                                                                  CAATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCT             <  SRR4302532.5772995/94‑1 (MQ=60)

                                                                                    ATCAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGG           <  SRR4302532.1507282/94‑1 (MQ=60)

                                                                                      CAAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCC         >  SRR4302532.6031770/1‑94 (MQ=60)

                                                                                       AAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCT        >  SRR4302532.906033/1‑94 (MQ=60)

                                                                                       AAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCT        <  SRR4302532.6200482/94‑1 (MQ=60)

                                                                                       AAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCT        >  SRR4302532.2851283/1‑94 (MQ=60)

                                                                                       AAAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCT        >  SRR4302532.959461/1‑94 (MQ=60)

                                                                                       AAAAAAGGCGATTTAACCGTCGGTGCAGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCT        >  SRR4302532.744288/1‑94 (MQ=60)

                                                                                        AAAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTC       <  SRR4302532.4664627/94‑1 (MQ=60)

                                                                                         AAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCG      >  SRR4302532.6285642/1‑94 (MQ=60)

                                                                                         AAAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCG      >  SRR4302532.4606130/1‑94 (MQ=60)

                                                                                          AAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGC     >  SRR4302532.5465377/1‑94 (MQ=60)

                                                                                          AAAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGC     >  SRR4302532.3116814/1‑94 (MQ=60)

                                                                                           AAGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGAC    >  SRR4302532.2175899/1‑94 (MQ=60)

                                                                                            AGGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGCCG   <  SRR4302532.1055774/94‑1 (MQ=60)

                                                                                             GGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGCCGC  >  SRR4302532.5102309/1‑94 (MQ=60)

GAACTGGGGTTTAACCTTGTGGGATACGGTTGTACCACCTGTATTGGTAACTCTGGGCCGCTGCCCGATCCTATCGAAACGGCAATCAAAAAAAGCGATTTAACCGTCGGTGCGGTGCTGTCCGGCAACCGTAACTTTGAAGGCCGTATCCATCCGCTGGTTAAAACTAACTGGCTGGCCTCGCCGC  >  NC_000913/1335325‑1335511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`