Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACGGGTGTCG  >  NC_000913/1345071‑1345257
                                                                                             |                                                                                             
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGT                                                                                               >  SRR4302532.4255144/1‑94 (MQ=60)
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGT                                                                                               <  SRR4302532.5841217/94‑1 (MQ=60)
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGT                                                                                               <  SRR4302532.2237976/94‑1 (MQ=60)
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGG                                                                                               >  SRR4302532.1659529/1‑94 (MQ=60)
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGC                                                                                               <  SRR4302532.2912056/94‑1 (MQ=60)
GTCAGTCACTTTGTAAACCGGTTCACCTTTAATTTGTACATTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGT                                                                                               >  SRR4302532.669485/1‑94 (MQ=60)
   AGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCC                                                                                            >  SRR4302532.4941875/1‑94 (MQ=60)
    GTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCG                                                                                           >  SRR4302532.6302466/1‑94 (MQ=60)
    GTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCG                                                                                           >  SRR4302532.1840513/1‑94 (MQ=60)
    ATCACTTTGTATACCTTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCG                                                                                           <  SRR4302532.5910186/94‑1 (MQ=60)
      CACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGA                                                                                         >  SRR4302532.1972748/1‑94 (MQ=60)
      CACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGA                                                                                         >  SRR4302532.5090155/1‑94 (MQ=60)
       ACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAA                                                                                        >  SRR4302532.1851368/1‑94 (MQ=60)
        CTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAAT                                                                                       >  SRR4302532.2764983/1‑94 (MQ=60)
         TTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATA                                                                                      <  SRR4302532.3176289/94‑1 (MQ=60)
              AAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGC                                                                                 >  SRR4302532.6072206/1‑94 (MQ=60)
               AACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCG                                                                                >  SRR4302532.636431/1‑94 (MQ=60)
               AACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCG                                                                                >  SRR4302532.4107516/1‑94 (MQ=60)
                ACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGA                                                                               <  SRR4302532.2619731/94‑1 (MQ=60)
                 CCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGAT                                                                              >  SRR4302532.4482605/1‑94 (MQ=60)
                  cgttaacCCTTTTATTTGTCCAGTGCCGTTTTCCTGGCTGCAACCCAGTTCATCGCGCACAGCGTGTAAGAAAGGCACCGGAATACCGGCGATA                                                                             <  SRR4302532.5681564/87‑1 (MQ=60)
                   GTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACCGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAG                                                                            >  SRR4302532.1034112/1‑94 (MQ=60)
                   GTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAG                                                                            <  SRR4302532.3289239/94‑1 (MQ=60)
                   GTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAG                                                                            >  SRR4302532.7948/1‑94 (MQ=60)
                    TATCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGC                                                                           <  SRR4302532.3425556/94‑1 (MQ=60)
                     TTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCG                                                                          <  SRR4302532.1076291/94‑1 (MQ=60)
                      TCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGC                                                                         >  SRR4302532.5751830/1‑94 (MQ=60)
                      TCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCCGTATAACGGCGATCGCGC                                                                         >  SRR4302532.5863936/1‑94 (MQ=60)
                        ACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCG                                                                       >  SRR4302532.4952508/1‑94 (MQ=60)
                        ACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCG                                                                       >  SRR4302532.2607631/1‑94 (MQ=60)
                         CCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAGGGCGCCGGAATAAAGGCGATAGCGCCGT                                                                      <  SRR4302532.4429074/94‑1 (MQ=60)
                          CTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTT                                                                     <  SRR4302532.537082/94‑1 (MQ=60)
                          CTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTT                                                                     >  SRR4302532.5014600/1‑94 (MQ=60)
                            TTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTAT                                                                   >  SRR4302532.3878135/1‑94 (MQ=60)
                             TAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATC                                                                  >  SRR4302532.2698195/1‑94 (MQ=60)
                             TAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATC                                                                  <  SRR4302532.5241919/94‑1 (MQ=60)
                             TAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATC                                                                  >  SRR4302532.515455/1‑94 (MQ=60)
                             TAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACAAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATC                                                                  >  SRR4302532.2933592/1‑94 (MQ=60)
                              AATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCA                                                                 <  SRR4302532.2262405/94‑1 (MQ=60)
                               ATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAA                                                                >  SRR4302532.1008474/1‑94 (MQ=60)
                               ATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAA                                                                >  SRR4302532.5729298/1‑94 (MQ=60)
                                  TGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCA                                                             <  SRR4302532.1802771/94‑1 (MQ=60)
                                    TACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAA                                                           >  SRR4302532.5029101/1‑94 (MQ=60)
                                      CAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACG                                                         >  SRR4302532.196/1‑94 (MQ=60)
                                       AGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGA                                                        >  SRR4302532.390999/1‑94 (MQ=60)
                                           CCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACAC                                                    <  SRR4302532.909195/94‑1 (MQ=60)
                                           CCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATCAAGGCGATAGCGCCGTTATCAAGCAAACGACCAC                                                    >  SRR4302532.3505655/1‑94 (MQ=60)
                                           CCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACAC                                                    <  SRR4302532.5510787/94‑1 (MQ=60)
                                           CCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACAC                                                    <  SRR4302532.1510609/94‑1 (MQ=60)
                                            CGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACG                                                   >  SRR4302532.6099738/1‑94 (MQ=60)
                                            CGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACG                                                   >  SRR4302532.1643113/1‑94 (MQ=60)
                                             GTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCAGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGC                                                  <  SRR4302532.3788203/94‑1 (MQ=60)
                                              TTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGGGTAAGGAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACCCGCA                                                 >  SRR4302532.4887748/1‑94 (MQ=60)
                                               TTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCAT                                                >  SRR4302532.5396056/1‑94 (MQ=60)
                                                TTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATG                                               <  SRR4302532.2141043/94‑1 (MQ=60)
                                                TTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATG                                               <  SRR4302532.2962903/94‑1 (MQ=60)
                                                 TCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGC                                              >  SRR4302532.1264919/1‑94 (MQ=60)
                                                  CCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCC                                             <  SRR4302532.366390/94‑1 (MQ=60)
                                                  CCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCC                                             <  SRR4302532.2928823/94‑1 (MQ=60)
                                                  CCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCC                                             >  SRR4302532.4493129/1‑94 (MQ=60)
                                                   CTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCG                                            <  SRR4302532.86190/94‑1 (MQ=60)
                                                   CTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCG                                            >  SRR4302532.5953539/1‑94 (MQ=60)
                                                   CTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCG                                            >  SRR4302532.2626201/1‑94 (MQ=60)
                                                   CTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCG                                            >  SRR4302532.4591992/1‑94 (MQ=60)
                                                       CTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCAC                                        >  SRR4302532.23881/1‑94 (MQ=60)
                                                        TGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACG                                       >  SRR4302532.3523991/1‑94 (MQ=60)
                                                         GCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACGCGCATGCCGCCACGG                                      <  SRR4302532.3675433/94‑1 (MQ=60)
                                                          CAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGC                                     >  SRR4302532.1779171/1‑94 (MQ=60)
                                                          CAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGC                                     >  SRR4302532.2394085/1‑94 (MQ=60)
                                                           AAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCT                                    <  SRR4302532.2676796/94‑1 (MQ=60)
                                                            AACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTG                                   >  SRR4302532.3305635/1‑94 (MQ=60)
                                                              CCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGAT                                 <  SRR4302532.2082410/94‑1 (MQ=60)
                                                              CCAGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGAT                                 <  SRR4302532.1719790/94‑1 (MQ=60)
                                                                AGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATAT                               >  SRR4302532.4747869/1‑94 (MQ=60)
                                                                AGTTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATAC                               >  SRR4302532.4747870/1‑94 (MQ=60)
                                                                 GTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATC                              >  SRR4302532.4627056/1‑94 (MQ=60)
                                                                 GTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATC                              >  SRR4302532.5904011/1‑94 (MQ=60)
                                                                  TTCATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCG                             >  SRR4302532.4431490/1‑94 (MQ=60)
                                                                    CATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGAC                           >  SRR4302532.2881835/1‑94 (MQ=60)
                                                                     ATCGCGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACA                          >  SRR4302532.6092544/1‑94 (MQ=60)
                                                                      TCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAA                         >  SRR4302532.4039300/1‑94 (MQ=60)
                                                                         CGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTT                      >  SRR4302532.282736/1‑94 (MQ=60)
                                                                         CGCACAGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTT                      <  SRR4302532.3539548/94‑1 (MQ=60)
                                                                          GCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTC                     >  SRR4302532.1332175/1‑94 (MQ=60)
                                                                          GCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTC                     >  SRR4302532.4852611/1‑94 (MQ=60)
                                                                            ACAGCGTGTAAGAAAGGTGCCGGAATAAAGGAGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGATGATATCGCCAATTctcg                   >  SRR4302532.1375692/1‑90 (MQ=60)
                                                                             CAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGC                  <  SRR4302532.1137293/94‑1 (MQ=60)
                                                                              AGCGTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCT                 <  SRR4302532.2276025/94‑1 (MQ=60)
                                                                                 GTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCG              >  SRR4302532.6171804/1‑94 (MQ=60)
                                                                                 GTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCG              >  SRR4302532.2946836/1‑94 (MQ=60)
                                                                                 GTGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCG              <  SRR4302532.876518/94‑1 (MQ=60)
                                                                                  TGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGA             <  SRR4302532.5536876/94‑1 (MQ=60)
                                                                                  TGTAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGA             >  SRR4302532.3838889/1‑94 (MQ=60)
                                                                                   GTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCTAA            >  SRR4302532.2283851/1‑94 (MQ=60)
                                                                                    TAAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAA           >  SRR4302532.4243512/1‑94 (MQ=60)
                                                                                     AAGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAAC          >  SRR4302532.6285747/1‑94 (MQ=60)
                                                                                      AGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACG         <  SRR4302532.2272268/94‑1 (MQ=60)
                                                                                      AGAAAGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACG         <  SRR4302532.3302322/94‑1 (MQ=60)
                                                                                      AGAAAGGCGCCGGAATAAAGGCGATAGAGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACG         >  SRR4302532.4203012/1‑94 (MQ=60)
                                                                                          AGGCGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACGGGTG     >  SRR4302532.6336679/1‑94 (MQ=60)
                                                                                             CGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACGGGTGTCG  <  SRR4302532.1003710/94‑1 (MQ=60)
                                                                                             CGCCGGAATAAAGGCGAGAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACGGGTGTCG  <  SRR4302532.1003711/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTCAGTCACTTTGTAAACCGTTTCACCTTTAATTTGTACAGTGCCGTTTTCCTGGCTGCAAACCAGTTCATCGCGCACAGCGTGTAAGAAAGGTGCCGGAATAAAGGCGATAGCGCCGTTATCAACCAAACGAACACGCATGCCGCCACGGCTGATATCGACAATTTCCGCTGCGAAACGGGTGTCG  >  NC_000913/1345071‑1345257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑