Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,025,101 |
T→C |
A318A (GCA→GCG) |
b1956 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,025,101 | 0 | T | C | 96.5%
| 771.7
/ 10.1
| 228 | A318A (GCA→GCG) | b1956 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (3/5); new base C (106/114); total (109/119) |
| Fisher's exact test for biased strand distribution p-value = 7.24e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
Only 100 of 231 total aligned reads displayed.
ACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACT > NC_000913/2025011‑2025190
|
cACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTg < 2:5997811/93‑1 (MQ=255)
ccAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTgcg > 2:5354950/1‑93 (MQ=255)
cAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTgcgc > 2:679176/1‑93 (MQ=255)
cAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTgcgc > 1:3824692/1‑93 (MQ=255)
gCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCa < 2:2206420/93‑1 (MQ=255)
cacaCCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAg < 2:3479751/93‑1 (MQ=255)
cacCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCa > 2:5270529/1‑93 (MQ=255)
cccgccgAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCaa < 1:1601609/92‑1 (MQ=255)
cccGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCaa < 1:469419/92‑1 (MQ=255)
ccGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAg > 2:1666044/1‑93 (MQ=255)
gTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGc > 2:4310457/1‑93 (MQ=255)
tCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGcc > 1:5027668/1‑93 (MQ=255)
tCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGcc > 1:224729/1‑93 (MQ=255)
tCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGcc < 1:2671017/93‑1 (MQ=255)
gAAATGGTCCAGACGTTCCCAGCTAACATAGCTACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAg < 1:3224973/93‑1 (MQ=255)
gAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAg < 1:5758555/93‑1 (MQ=255)
aaaTGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGt > 1:4306063/1‑93 (MQ=255)
aaTGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGtt < 2:15325/93‑1 (MQ=255)
ggTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCAc > 2:3435903/1‑93 (MQ=255)
gTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACg > 2:2217849/1‑93 (MQ=255)
cAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAgg > 2:6111599/1‑93 (MQ=255)
cAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAgg > 1:1786943/1‑93 (MQ=255)
aggcGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 2:2124429/90‑1 (MQ=255)
aGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 1:2753340/93‑1 (MQ=255)
aGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 2:131006/93‑1 (MQ=255)
aGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 1:3421403/93‑1 (MQ=255)
aGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 1:6140816/93‑1 (MQ=255)
aGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 1:2086445/93‑1 (MQ=255)
aGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGa < 1:5889867/93‑1 (MQ=255)
gACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAt > 2:1745979/1‑93 (MQ=255)
gACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAt < 1:1987492/93‑1 (MQ=255)
aCGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATc > 1:3290390/1‑93 (MQ=255)
ttCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCaaa > 2:4871575/1‑93 (MQ=255)
ttCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCaaa < 2:63179/93‑1 (MQ=255)
tCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCaaaa < 1:3702187/93‑1 (MQ=255)
cccAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCaaaaa > 2:5291649/1‑93 (MQ=255)
cccAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCaaaaa < 1:2022619/93‑1 (MQ=255)
cccAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCaaaaa < 1:5417906/93‑1 (MQ=255)
cAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAata < 2:304922/93‑1 (MQ=255)
aGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAatat > 1:1046497/1‑93 (MQ=255)
aGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAatat > 1:2291368/1‑93 (MQ=255)
gCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGTTCAAAAATAtt < 1:3664514/93‑1 (MQ=255)
gCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATAtt > 2:3315326/1‑93 (MQ=255)
cTAACATAGCGCCTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTc < 1:2567357/93‑1 (MQ=255)
cTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTc < 2:5946122/93‑1 (MQ=255)
cTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTc < 2:1788548/93‑1 (MQ=255)
tAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTcc > 2:2237717/1‑93 (MQ=255)
tAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTcc > 1:3025227/1‑93 (MQ=255)
aaCATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTccc < 1:4269369/93‑1 (MQ=255)
aaCATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTccc > 1:1287632/1‑93 (MQ=255)
aCATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCt < 2:3886452/93‑1 (MQ=255)
cATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCACGGCCAGTTCACGAGGATCAAAAATATTCCCTg > 1:1446857/1‑93 (MQ=255)
cATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTg < 2:2342632/93‑1 (MQ=255)
aTAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGt < 1:518033/93‑1 (MQ=255)
tAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGtt > 2:5781429/1‑93 (MQ=255)
aaGCGACTGGCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGtt < 1:1730526/92‑1 (MQ=255)
aGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTg < 1:1052832/93‑1 (MQ=255)
cGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGa < 1:5509314/93‑1 (MQ=255)
gACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGAt > 2:3820848/1‑93 (MQ=255)
aCTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGATGATCAAAAATATTCCCTGTTGGATg > 2:4445894/1‑93 (MQ=255)
aCTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGTTCAAAAATATTCCCTGTTGGATg > 1:5656797/1‑93 (MQ=255)
aCTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATg > 1:4883592/1‑93 (MQ=255)
tGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGt < 2:1508600/93‑1 (MQ=255)
tGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGt > 2:4181188/1‑93 (MQ=255)
ccATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAg > 1:423305/1‑93 (MQ=255)
cATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAgg > 2:2032653/1‑93 (MQ=255)
aTACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAggt > 2:4375662/1‑92 (MQ=255)
tACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGAt > 2:4090222/1‑93 (MQ=255)
aaCGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGAt < 1:4508139/92‑1 (MQ=255)
aaTGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGa > 2:4053945/1‑93 (MQ=255)
aTGCCGCCCCGCTTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGaa < 1:5545514/93‑1 (MQ=255)
aTGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGaa < 1:4653574/93‑1 (MQ=255)
tGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAag < 1:5354050/93‑1 (MQ=255)
gccgccCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAaga < 1:2925055/93‑1 (MQ=255)
ccgccCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAagag < 2:2569395/93‑1 (MQ=255)
gccCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAgga > 2:4894817/1‑92 (MQ=255)
gccCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGt > 1:2958158/1‑93 (MQ=255)
ccccGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTc > 2:5550781/1‑93 (MQ=255)
cccGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCa > 2:3672791/1‑93 (MQ=255)
cccGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCa > 2:3129961/1‑93 (MQ=255)
gcgTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCaaaa < 2:5629897/93‑1 (MQ=255)
cgTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCaaaaa < 2:6128422/93‑1 (MQ=255)
cgTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCaaaaa > 1:4750500/1‑93 (MQ=255)
gtgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAt > 2:4815189/1‑93 (MQ=255)
gtgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAt > 1:4994906/1‑93 (MQ=255)
gtgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAt > 2:3542157/1‑93 (MQ=255)
tgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAtc > 2:4679144/1‑93 (MQ=255)
tgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAtc < 2:2814155/93‑1 (MQ=255)
tgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAtc < 1:4426803/93‑1 (MQ=255)
tgtCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAtc > 2:1562228/1‑93 (MQ=255)
tCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAtctc < 2:3770138/93‑1 (MQ=255)
cATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCa < 1:937772/93‑1 (MQ=255)
cATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCa < 1:4851385/93‑1 (MQ=255)
cATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCa < 1:4097262/93‑1 (MQ=255)
aTGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAg > 1:285932/1‑93 (MQ=255)
tGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGc > 1:4463048/1‑93 (MQ=255)
gTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCt < 2:3493936/93‑1 (MQ=255)
gTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCt < 1:1330738/93‑1 (MQ=255)
ttCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCtt > 2:2954123/1‑93 (MQ=255)
ttCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCtt < 2:110091/93‑1 (MQ=255)
|
ACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACT > NC_000913/2025011‑2025190
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACTGT > NC_000913/2025008‑2025192
|
GACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATC < SRR4302532.5157135/94‑1 (MQ=60)
CACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGC > SRR4302532.1816257/1‑94 (MQ=60)
CCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGC > SRR4302532.3953822/1‑94 (MQ=60)
AGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCA > SRR4302532.745028/1‑94 (MQ=60)
AGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCA < SRR4302532.4744129/94‑1 (MQ=60)
CACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGC > SRR4302532.5975824/1‑94 (MQ=60)
CACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGC < SRR4302532.5572249/94‑1 (MQ=60)
ACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCA > SRR4302532.314189/1‑94 (MQ=60)
cccgcCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAG < SRR4302532.1655816/89‑1 (MQ=60)
CCCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAG < SRR4302532.485770/94‑1 (MQ=60)
ACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCCAG > SRR4302532.1482828/1‑94 (MQ=60)
ACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAG < SRR4302532.5936993/94‑1 (MQ=60)
CCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCAATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGG < SRR4302532.1720904/94‑1 (MQ=60)
GTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCC > SRR4302532.5200119/1‑94 (MQ=60)
GTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCC > SRR4302532.232406/1‑94 (MQ=60)
TCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCA < SRR4302532.3402382/94‑1 (MQ=60)
TCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCA < SRR4302532.2760663/94‑1 (MQ=60)
CGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAG < SRR4302532.2064525/94‑1 (MQ=60)
GAAATGGTCCAGACGTTCCCAGCTAACATAGCTACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGT < SRR4302532.3332023/94‑1 (MQ=60)
GAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGT > SRR4302532.4451652/1‑94 (MQ=60)
GAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGT > SRR4302532.3924897/1‑94 (MQ=60)
GAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGT < SRR4302532.5958981/94‑1 (MQ=60)
GAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGT < SRR4302532.3117461/94‑1 (MQ=60)
AATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGACGCCCCGCGTGTGATGTTCCATTGCCTGCGCCAGAAAGGGCAGTTC > SRR4302532.2876176/1‑94 (MQ=60)
ATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCA < SRR4302532.5668806/94‑1 (MQ=60)
TGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCAC < SRR4302532.4047518/94‑1 (MQ=60)
CCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGG > SRR4302532.1846673/1‑94 (MQ=60)
AGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAT < SRR4302532.3536014/94‑1 (MQ=60)
AGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAT < SRR4302532.6093841/94‑1 (MQ=60)
AGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAT < SRR4302532.6352642/94‑1 (MQ=60)
AGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAT < SRR4302532.2845810/94‑1 (MQ=60)
AGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAT > SRR4302532.1087647/1‑94 (MQ=60)
AGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGAT < SRR4302532.2156017/94‑1 (MQ=60)
GACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATC > SRR4302532.3399854/1‑94 (MQ=60)
GACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATC < SRR4302532.2053537/94‑1 (MQ=60)
ACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCA > SRR4302532.5576988/1‑94 (MQ=60)
GTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAA > SRR4302532.3765645/1‑94 (MQ=60)
GTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAA > SRR4302532.6280477/1‑94 (MQ=60)
GTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAA > SRR4302532.5861728/1‑94 (MQ=60)
TCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAA < SRR4302532.3826478/94‑1 (MQ=60)
CCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAAT < SRR4302532.5605679/94‑1 (MQ=60)
CCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAAT < SRR4302532.2090041/94‑1 (MQ=60)
CCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATA > SRR4302532.4704550/1‑94 (MQ=60)
CAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATAT > SRR4302532.2367422/1‑94 (MQ=60)
CAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATAT > SRR4302532.1081770/1‑94 (MQ=60)
AGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATT < SRR4302532.4485161/94‑1 (MQ=60)
AGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATT < SRR4302532.1577282/94‑1 (MQ=60)
GCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGTTCAAAAATATTC < SRR4302532.3787583/94‑1 (MQ=60)
GCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTC < SRR4302532.2732676/94‑1 (MQ=60)
GCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTC > SRR4302532.2035654/1‑94 (MQ=60)
CTAACATAGCGCCTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCC < SRR4302532.2653060/94‑1 (MQ=60)
CTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCC > SRR4302532.3125024/1‑94 (MQ=60)
TAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCC > SRR4302532.5486125/1‑94 (MQ=60)
TAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCC > SRR4302532.1330701/1‑94 (MQ=60)
AACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCT < SRR4302532.4413127/94‑1 (MQ=60)
ACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCACGGCCAGTTCACGAGGATCAAAAATATTCCCTG > SRR4302532.1495646/1‑94 (MQ=60)
ACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTG < SRR4302532.136767/94‑1 (MQ=60)
ACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTG < SRR4302532.4380170/94‑1 (MQ=60)
CATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGT > SRR4302532.246543/1‑94 (MQ=60)
ATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTT < SRR4302532.5738692/94‑1 (MQ=60)
ATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTT < SRR4302532.536123/94‑1 (MQ=60)
ATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTT < SRR4302532.4990055/94‑1 (MQ=60)
ATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGACAGTTCACGAGGATCAAAAATATTCCCTGTT > SRR4302532.214060/1‑94 (MQ=60)
ATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGACAGATCACGAGGATCAAAAATATTCTCTGTT > SRR4302532.214061/1‑94 (MQ=60)
TAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTG > SRR4302532.3969425/1‑94 (MQ=60)
TAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTG < SRR4302532.1788942/94‑1 (MQ=60)
AAGCGACTGGCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTG < SRR4302532.1788774/94‑1 (MQ=60)
AGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGTGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGG < SRR4302532.3823782/94‑1 (MQ=60)
AGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGG < SRR4302532.1088330/94‑1 (MQ=60)
AGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGG > SRR4302532.36046/1‑94 (MQ=60)
CGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGAT < SRR4302532.5700460/94‑1 (MQ=60)
GACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGTTCAAAAATATTCCCTGTTGGATG > SRR4302532.5853789/1‑94 (MQ=60)
GACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATG > SRR4302532.5051491/1‑94 (MQ=60)
ACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGG < SRR4302532.4600871/94‑1 (MQ=60)
CTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGT < SRR4302532.303867/94‑1 (MQ=60)
TCCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAG > SRR4302532.437982/1‑94 (MQ=60)
CCATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGG < SRR4302532.2342099/94‑1 (MQ=60)
ATACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGAT < SRR4302532.4449576/94‑1 (MQ=60)
ATACGAATGCCGCCCCGCGTGGCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGAT < SRR4302532.3284813/94‑1 (MQ=60)
CACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATT < SRR4302532.4568351/94‑1 (MQ=60)
AACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATT < SRR4302532.4662067/94‑1 (MQ=60)
ACGAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTG < SRR4302532.5091636/94‑1 (MQ=60)
GAATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGA > SRR4302532.4911484/1‑94 (MQ=60)
AATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAA < SRR4302532.463872/94‑1 (MQ=60)
ATGCCGCCCCGCTTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAG < SRR4302532.5737984/94‑1 (MQ=60)
ATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAG < SRR4302532.485324/94‑1 (MQ=60)
ATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAG < SRR4302532.4812228/94‑1 (MQ=60)
ATGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAG < SRR4302532.4961128/94‑1 (MQ=60)
TGCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGA < SRR4302532.5539728/94‑1 (MQ=60)
gccgacccgtgagcgATGTTCCATCGCCAGCGCCAGCAAGGCCAGTTCACGAGGATCTAAAATGTTCCCTGCTAGATGGTCAGTATTGAAAGAT < SRR4302532.868666/79‑1 (MQ=35)
GCCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAG < SRR4302532.3022400/94‑1 (MQ=60)
CCGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGG < SRR4302532.2649555/94‑1 (MQ=60)
CGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGT > SRR4302532.2981332/1‑94 (MQ=60)
CGCCCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGT > SRR4302532.3056163/1‑94 (MQ=60)
CCCGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAA > SRR4302532.4366175/1‑94 (MQ=60)
CGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAA < SRR4302532.723373/94‑1 (MQ=60)
CGCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAA > SRR4302532.5043844/1‑94 (MQ=60)
GCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAA < SRR4302532.2960589/94‑1 (MQ=60)
GCGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAA > SRR4302532.4912898/1‑94 (MQ=60)
CGTGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAAT > SRR4302532.5166114/1‑94 (MQ=60)
TGTCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCT < SRR4302532.4577602/94‑1 (MQ=60)
TCATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCA < SRR4302532.5292599/94‑1 (MQ=60)
CATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAG > SRR4302532.295806/1‑94 (MQ=60)
CATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAG < SRR4302532.969904/94‑1 (MQ=60)
CATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAG < SRR4302532.4234806/94‑1 (MQ=60)
CATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAG > SRR4302532.5181705/1‑94 (MQ=60)
CATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAG < SRR4302532.5018336/94‑1 (MQ=60)
ATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGC < SRR4302532.5717489/94‑1 (MQ=60)
ATGTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGC > SRR4302532.4615186/1‑94 (MQ=60)
GTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTT < SRR4302532.1375215/94‑1 (MQ=60)
GTTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTT < SRR4302532.1375216/94‑1 (MQ=60)
TTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTA < SRR4302532.2308387/94‑1 (MQ=60)
TTCCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTA < SRR4302532.2762675/94‑1 (MQ=60)
CCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACT > SRR4302532.3335222/1‑94 (MQ=60)
CCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACT < SRR4302532.1171852/94‑1 (MQ=60)
CCATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACT > SRR4302532.5193042/1‑94 (MQ=60)
ATCGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACTGT > SRR4302532.2437110/1‑94 (MQ=60)
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GACACGCACCAGCACACCGTCGAAATGGTCCAGACGTTCCCAGCTAACATAGCGACTGTCCATACGAATGCCGCCCCGCGTGTCATGTTCCATTGCCTGCGCCAGCAAGGCCAGTTCACGAGGATCAAAAATATTCCCTGTTGGATGGTCAGGATTGGAAGAGGTCAAAAATCTCAGCTTACTGT > NC_000913/2025008‑2025192
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
