Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,656,601 T→C T119A (ACG→GCG)  hscA ← HscA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,656,6010TC100.0% 802.9 / NA 220T119A (ACG→GCG) hscAHscA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (86/134);  total (86/134)

Only 100 of 231 total aligned reads displayed.

GCTCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGTTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCA  >  NC_000913/2656511‑2656690
                                                                                          |                                                                                         
 cTCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTc                                                                                        <  2:5059507/93‑1 (MQ=255)
  tCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCa                                                                                       >  2:4305428/1‑93 (MQ=255)
   cGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCaa                                                                                      <  1:3790122/93‑1 (MQ=255)
   cGCCGGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCaa                                                                                      <  1:3580003/93‑1 (MQ=255)
    gCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAat                                                                                     <  2:186697/93‑1 (MQ=255)
    gCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAat                                                                                     >  1:5568524/1‑93 (MQ=255)
     ccTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCGGAGCCGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCActc                                                                                    <  1:5465658/93‑1 (MQ=255)
      cTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAatca                                                                                   <  1:4324953/93‑1 (MQ=255)
           aGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGc                                                                              >  2:466489/1‑93 (MQ=255)
           aGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGc                                                                              >  1:1959810/1‑93 (MQ=255)
           aGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGc                                                                              >  2:3131419/1‑93 (MQ=255)
            gggCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCa                                                                             <  2:3707624/93‑1 (MQ=255)
                    gTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGttt                                                                     >  2:4067237/1‑93 (MQ=255)
                     ttGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGtttt                                                                    <  1:5827728/93‑1 (MQ=255)
                      tGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTc                                                                   <  2:1440889/93‑1 (MQ=255)
                       gCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCCTCAATCATCGGCAGGCCGTTTTCg                                                                  >  1:4468387/1‑93 (MQ=255)
                        cccGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGc                                                                 >  1:4533288/1‑93 (MQ=255)
                        cccGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGc                                                                 <  2:322058/93‑1 (MQ=255)
                          cgcgCTGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCGCCGGTTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTg                                                               <  2:4497142/93‑1 (MQ=255)
                           gcgcCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTgg                                                              <  1:4600998/93‑1 (MQ=255)
                             gccgccAGTGCTTTGAGGATGTCGGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGcc                                                            <  2:2698293/93‑1 (MQ=255)
                              ccgccAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCt                                                           <  1:1909500/93‑1 (MQ=255)
                              ccgccAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCt                                                           >  2:5390270/1‑93 (MQ=255)
                               cgccAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTg                                                          <  1:2815341/93‑1 (MQ=255)
                               cgccAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTg                                                          <  1:848455/93‑1 (MQ=255)
                                gccAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTgg                                                         <  1:3355899/93‑1 (MQ=255)
                                 ccAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGa                                                        <  1:4709097/93‑1 (MQ=255)
                                  cAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGaa                                                       <  2:2587754/93‑1 (MQ=255)
                                  cAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGaa                                                       <  2:6124493/93‑1 (MQ=255)
                                  cAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGaa                                                       >  2:5735668/1‑93 (MQ=255)
                                   aGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAt                                                      >  1:714379/1‑93 (MQ=255)
                                   aGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAt                                                      >  1:4559006/1‑93 (MQ=255)
                                    gTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAtt                                                     <  2:3861077/93‑1 (MQ=255)
                                      gCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGa                                                   <  2:104266/93‑1 (MQ=255)
                                      gCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGa                                                   <  1:3069156/93‑1 (MQ=255)
                                      gCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATGGa                                                   >  1:1436946/1‑93 (MQ=255)
                                      gCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGATGGCCTGGAATTGa                                                   >  1:4732494/1‑93 (MQ=255)
                                       cTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGAt                                                  >  1:5707966/1‑93 (MQ=255)
                                       cTTTAAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGAt                                                  <  1:5027788/93‑1 (MQ=255)
                                         ttGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATaa                                                <  2:5943013/93‑1 (MQ=255)
                                         ttGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATaa                                                <  2:2196625/93‑1 (MQ=255)
                                          tGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAg                                               >  2:290302/1‑93 (MQ=255)
                                            aGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGc                                             <  1:4019021/93‑1 (MQ=255)
                                             ggATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCa                                            >  2:1093657/1‑93 (MQ=255)
                                             ggATGTCCGAAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCa                                            <  2:3202521/93‑1 (MQ=255)
                                               atttCCGCAGAAACGCGCCCCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGa                                          <  2:5131987/90‑1 (MQ=255)
                                               aTGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGa                                          <  2:5297717/93‑1 (MQ=255)
                                                  tCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGc                                       <  2:5866901/93‑1 (MQ=255)
                                                  tCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGc                                       <  2:5695972/93‑1 (MQ=255)
                                                  tCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGc                                       <  1:3233700/93‑1 (MQ=255)
                                                   ccGCAGAACTGCGCACCGGGTTGAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCg                                      <  1:2922297/93‑1 (MQ=255)
                                                   ccGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCg                                      >  1:6085287/1‑93 (MQ=255)
                                                     ccAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGa                                    <  1:2356585/92‑1 (MQ=255)
                                                      cAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGAt                                   >  2:3649974/1‑93 (MQ=255)
                                                       aGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATa                                  >  1:5395/1‑93 (MQ=255)
                                                        gAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATac                                 >  2:5245453/1‑92 (MQ=255)
                                                        gAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAg                                 >  1:1623755/1‑93 (MQ=255)
                                                        gAAACGCGCACCGGGTGCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAg                                 <  1:1820846/93‑1 (MQ=255)
                                                         aaaCGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGc                                <  1:2576722/93‑1 (MQ=255)
                                                         aaaCGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTAATAAGGCAGATGCGGATAGc                                <  2:3125754/93‑1 (MQ=255)
                                                            cgcgCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGtt                             >  2:1117354/1‑93 (MQ=255)
                                                               gcACCGGGTTCAGCAGCTCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCt                          >  2:274620/1‑93 (MQ=255)
                                                                cACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTg                         <  2:677580/93‑1 (MQ=255)
                                                                cACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTg                         >  2:2083555/1‑93 (MQ=255)
                                                                 cccGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTgg                        <  1:2807044/92‑1 (MQ=255)
                                                                  ccGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGa                       <  1:1519012/93‑1 (MQ=255)
                                                                    gggTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGata                     <  1:466489/93‑1 (MQ=255)
                                                                     ggTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGatat                    >  2:5623229/1‑93 (MQ=255)
                                                                      gTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTTCTGGATATc                   >  2:1387240/1‑93 (MQ=255)
                                                                      gTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATc                   <  1:3078291/93‑1 (MQ=255)
                                                                      gTTCAACAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATc                   <  2:5010523/93‑1 (MQ=255)
                                                                       ttCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATca                  <  2:3598436/93‑1 (MQ=255)
                                                                         cagcagCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagc                <  1:2885794/93‑1 (MQ=255)
                                                                         cagcagCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagc                <  2:5995563/93‑1 (MQ=255)
                                                                         cagcagCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagc                <  1:1574724/93‑1 (MQ=255)
                                                                         cagcagCCCCCCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagc                <  1:2329483/93‑1 (MQ=255)
                                                                         cagcacCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGAAGATGCGGATAGCGTTGCTGGATATcagc                <  2:4881941/93‑1 (MQ=255)
                                                                           gcagcCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagcca              <  2:5568524/93‑1 (MQ=255)
                                                                             agcCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagccagc            >  1:5980133/1‑93 (MQ=255)
                                                                             agcCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagccagc            <  1:1728133/93‑1 (MQ=255)
                                                                             agcCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagccagc            <  1:4944694/93‑1 (MQ=255)
                                                                             acccccGCCGCCGTTTCAATCATCGGCAGGCCTGTTCCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATcagccagc            <  1:1188520/91‑1 (MQ=255)
                                                                              gcCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcg           >  2:626404/1‑93 (MQ=255)
                                                                               ccccGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcga          <  2:78678/93‑1 (MQ=255)
                                                                               ccccGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcga          >  2:332457/1‑93 (MQ=255)
                                                                               ccccGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcga          <  2:2396587/93‑1 (MQ=255)
                                                                               ccccGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcga          <  1:2768909/93‑1 (MQ=255)
                                                                                cccGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcgag         <  1:5284895/93‑1 (MQ=255)
                                                                                 ccgccgccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcgagc        <  2:399162/93‑1 (MQ=255)
                                                                                 ccgccgccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcgagc        >  1:4224988/1‑93 (MQ=255)
                                                                                  cgccgccgcTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCagcgagcg       >  2:4204000/1‑93 (MQ=255)
                                                                                   gccgccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCCGCGAGAGt      >  2:607581/1‑93 (MQ=255)
                                                                                   gccgccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGt      <  1:3380376/93‑1 (MQ=255)
                                                                                    ccgccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTc     <  2:4527412/93‑1 (MQ=255)
                                                                                     cgccgcTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTcc    >  2:5970444/1‑93 (MQ=255)
                                                                                      gccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTccc   >  2:1625338/1‑93 (MQ=255)
                                                                                      gccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTccc   >  1:5088124/1‑93 (MQ=255)
                                                                                      gccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTccc   >  1:1284348/1‑93 (MQ=255)
                                                                                       ccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCa  <  2:4849785/93‑1 (MQ=255)
                                                                                       ccgCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCa  >  1:3780903/1‑93 (MQ=255)
                                                                                          |                                                                                         
GCTCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGTTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCA  >  NC_000913/2656511‑2656690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGTTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCATCA  >  NC_000913/2656513‑2656693
                                                                                        |                                                                                            
TCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAA                                                                                         >  SRR4302532.3170849/1‑94 (MQ=60)
 CGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAAT                                                                                        >  SRR4302532.5761898/1‑94 (MQ=60)
 CGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAAT                                                                                        <  SRR4302532.3467371/94‑1 (MQ=60)
 CGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAAT                                                                                        <  SRR4302532.3917992/94‑1 (MQ=60)
 CGCCGGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAAT                                                                                        <  SRR4302532.3699768/94‑1 (MQ=60)
   CCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCGGAGCCGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCACTCA                                                                                      <  SRR4302532.5655153/94‑1 (MQ=60)
    CTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCAT                                                                                     <  SRR4302532.2748623/94‑1 (MQ=60)
    CTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCAT                                                                                     <  SRR4302532.4471092/94‑1 (MQ=60)
     TGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATC                                                                                    >  SRR4302532.4779269/1‑94 (MQ=60)
      TCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCG                                                                                   <  SRR4302532.1579556/94‑1 (MQ=60)
      GCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCGATCATCG                                                                                   <  SRR4302532.6259497/94‑1 (MQ=60)
      GCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCG                                                                                   >  SRR4302532.4711507/1‑94 (MQ=60)
      GCCAGGGCTTCAGTTCCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCG                                                                                   <  SRR4302532.1579557/94‑1 (MQ=60)
      GCAAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCG                                                                                   <  SRR4302532.4436225/94‑1 (MQ=60)
       CCAGGTCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGG                                                                                  <  SRR4302532.130574/94‑1 (MQ=60)
       CCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGG                                                                                  <  SRR4302532.4680861/94‑1 (MQ=60)
       CCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGG                                                                                  <  SRR4302532.5751216/94‑1 (MQ=60)
        CAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGC                                                                                 >  SRR4302532.2024913/1‑94 (MQ=60)
         AGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCA                                                                                <  SRR4302532.2517237/94‑1 (MQ=60)
          GGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAG                                                                               >  SRR4302532.5720723/1‑94 (MQ=60)
          GGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAG                                                                               <  SRR4302532.3252549/94‑1 (MQ=60)
          GGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAG                                                                               <  SRR4302532.2870380/94‑1 (MQ=60)
           GGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGG                                                                              <  SRR4302532.3917824/94‑1 (MQ=60)
            GCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGC                                                                             >  SRR4302532.5960496/1‑94 (MQ=60)
                 AGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTT                                                                        >  SRR4302532.4866581/1‑94 (MQ=60)
                   TTGCCCGCGCCGCCAGTGCTTTGAGGATTGCCGCAGAACCGCGCGCCGGTTTAAGCGGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTC                                                                      <  SRR4302532.5409021/94‑1 (MQ=60)
                   TTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTC                                                                      <  SRR4302532.6030076/94‑1 (MQ=60)
                    TGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCGCCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCG                                                                     <  SRR4302532.4957880/94‑1 (MQ=60)
                    TGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCCTCAATCATCGGCAGGCCGTTTTCG                                                                     >  SRR4302532.4620732/1‑94 (MQ=60)
                     GCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGC                                                                    >  SRR4302532.4688016/1‑94 (MQ=60)
                      CCCCCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCT                                                                   <  SRR4302532.1663674/94‑1 (MQ=60)
                       CCGCGCCGCCAGTGCTTTGAGAATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTG                                                                  <  SRR4302532.6037804/94‑1 (MQ=60)
                         GCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGC                                                                <  SRR4302532.4757859/94‑1 (MQ=60)
                            CCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTG                                                             <  SRR4302532.1972902/94‑1 (MQ=60)
                             CGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGG                                                            >  SRR4302532.5234880/1‑94 (MQ=60)
                             CGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGG                                                            <  SRR4302532.2909576/94‑1 (MQ=60)
                             CGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGG                                                            <  SRR4302532.877624/94‑1 (MQ=60)
                              GCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGA                                                           <  SRR4302532.3918363/94‑1 (MQ=60)
                              GCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGA                                                           <  SRR4302532.3467974/94‑1 (MQ=60)
                               CCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAA                                                          <  SRR4302532.4869777/94‑1 (MQ=60)
                                CAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAT                                                         >  SRR4302532.4714532/1‑94 (MQ=60)
                                CAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAT                                                         >  SRR4302532.738772/1‑94 (MQ=60)
                                CAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAT                                                         >  SRR4302532.4336301/1‑94 (MQ=60)
                                   agtttgcAGGATGTCCGCAGAACCGCGCCCCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGA                                                      <  SRR4302532.4726307/87‑1 (MQ=60)
                                   TGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATGGA                                                      >  SRR4302532.1485352/1‑94 (MQ=60)
                                   TGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGATGGCCTGGAATTGA                                                      >  SRR4302532.4894030/1‑94 (MQ=60)
                                    GCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGAT                                                     <  SRR4302532.3170571/94‑1 (MQ=60)
                                    GCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGAT                                                     >  SRR4302532.5906958/1‑94 (MQ=60)
                                     CTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATA                                                    >  SRR4302532.1776451/1‑94 (MQ=60)
                                     CTTTAAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATA                                                    <  SRR4302532.5200241/94‑1 (MQ=60)
                                      TTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAA                                                   >  SRR4302532.578471/1‑94 (MQ=60)
                                        TGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGG                                                 >  SRR4302532.3269867/1‑94 (MQ=60)
                                        TGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAAGTGATAAGG                                                 >  SRR4302532.6208684/1‑94 (MQ=60)
                                          AGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCA                                               <  SRR4302532.4154451/94‑1 (MQ=60)
                                             ATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGAT                                            <  SRR4302532.540347/94‑1 (MQ=60)
                                             ATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGAT                                            <  SRR4302532.1875721/94‑1 (MQ=60)
                                                TCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTTATAAGGCAGATGCG                                         >  SRR4302532.5513288/1‑94 (MQ=60)
                                                TCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCG                                         >  SRR4302532.6295411/1‑94 (MQ=60)
                                                TCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCG                                         <  SRR4302532.3341048/94‑1 (MQ=60)
                                                 CCGCAGAACTGCGCACCGGGTTGAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGG                                        <  SRR4302532.3019593/94‑1 (MQ=60)
                                                 CCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTTGCTGGCCTGGAATTGATAATGCAGATGCGG                                        >  SRR4302532.1986705/1‑94 (MQ=60)
                                                  CGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGA                                       >  SRR4302532.1950915/1‑94 (MQ=60)
                                                   GCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGAT                                      <  SRR4302532.4818106/94‑1 (MQ=60)
                                                   CCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGAT                                      <  SRR4302532.2435205/94‑1 (MQ=60)
                                                    CAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATA                                     >  SRR4302532.5621/1‑94 (MQ=60)
                                                    CAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATA                                     >  SRR4302532.5620/1‑94 (MQ=60)
                                                    CAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATA                                     <  SRR4302532.2989481/94‑1 (MQ=60)
                                                    CAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATACGGATA                                     >  SRR4302532.1555202/1‑94 (MQ=60)
                                                     AGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAG                                    <  SRR4302532.3652139/94‑1 (MQ=60)
                                                     AGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAG                                    <  SRR4302532.893810/94‑1 (MQ=60)
                                                     AGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAG                                    >  SRR4302532.1678705/1‑94 (MQ=60)
                                                     AGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAG                                    >  SRR4302532.875902/1‑94 (MQ=60)
                                                      GAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGC                                   <  SRR4302532.2214980/94‑1 (MQ=60)
                                                      GAAACGCGCACCGGGTGCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGC                                   <  SRR4302532.1881521/94‑1 (MQ=60)
                                                       AAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCG                                  <  SRR4302532.2372957/94‑1 (MQ=60)
                                                       AAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCG                                  <  SRR4302532.47239/94‑1 (MQ=60)
                                                       AAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCG                                  <  SRR4302532.2662802/94‑1 (MQ=60)
                                                        AACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGT                                 >  SRR4302532.5079865/1‑94 (MQ=60)
                                                         ACGCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTT                                <  SRR4302532.3679695/94‑1 (MQ=60)
                                                           GCGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGC                              >  SRR4302532.4650746/1‑94 (MQ=60)
                                                            CGCACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCT                             >  SRR4302532.5168904/1‑94 (MQ=60)
                                                              CACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGG                           >  SRR4302532.3712965/1‑94 (MQ=60)
                                                              CACCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGG                           >  SRR4302532.6305794/1‑94 (MQ=60)
                                                               CCCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGA                          <  SRR4302532.2901058/94‑1 (MQ=60)
                                                                CCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGAT                         <  SRR4302532.3481786/94‑1 (MQ=60)
                                                                CCGGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGAT                         <  SRR4302532.1570306/94‑1 (MQ=60)
                                                                  GGGTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATAT                       <  SRR4302532.482740/94‑1 (MQ=60)
                                                                  GGGTTCAGCAGCCCAGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGTAGATGCGGATAGCGTTGCTGGATAT                       >  SRR4302532.4510019/1‑94 (MQ=60)
                                                                    GTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCA                     <  SRR4302532.1340256/94‑1 (MQ=60)
                                                                    GTTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCA                     <  SRR4302532.3180022/94‑1 (MQ=60)
                                                                     TTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAG                    >  SRR4302532.2411533/1‑94 (MQ=60)
                                                                     TTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAG                    <  SRR4302532.5290408/94‑1 (MQ=60)
                                                                     TTCAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAG                    <  SRR4302532.2932520/94‑1 (MQ=60)
                                                                       CAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCC                  <  SRR4302532.2982220/94‑1 (MQ=60)
                                                                       CAGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCC                  <  SRR4302532.1628037/94‑1 (MQ=60)
                                                                       CAGCAGCCCCCCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCC                  <  SRR4302532.2407075/94‑1 (MQ=60)
                                                                        AGCAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCA                 <  SRR4302532.1012677/94‑1 (MQ=60)
                                                                         GCAGCCCCCCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAG                <  SRR4302532.3001473/94‑1 (MQ=60)
                                                                          CAGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGC               >  SRR4302532.6186787/1‑94 (MQ=60)
                                                                           AGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCG              <  SRR4302532.5114410/94‑1 (MQ=60)
                                                                           AGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCG              <  SRR4302532.1786319/94‑1 (MQ=60)
                                                                           AGCCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCG              <  SRR4302532.1824073/94‑1 (MQ=60)
                                                                           ACCCCCGCCGCCGTTTCAATCATCGGCAGGCCTGTTCCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCG              <  SRR4302532.1228254/94‑1 (MQ=60)
                                                                             CCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAG            <  SRR4302532.3936015/94‑1 (MQ=60)
                                                                             CCCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAG            <  SRR4302532.2861875/94‑1 (MQ=60)
                                                                              CCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGC           <  SRR4302532.5467188/94‑1 (MQ=60)
                                                                              CCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGC           >  SRR4302532.4880512/1‑94 (MQ=60)
                                                                              CCCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGC           >  SRR4302532.4366792/1‑94 (MQ=60)
                                                                               CCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCG          <  SRR4302532.3028432/94‑1 (MQ=60)
                                                                               CCGCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCG          <  SRR4302532.2907546/94‑1 (MQ=60)
                                                                                 GCCGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTC        <  SRR4302532.3493421/94‑1 (MQ=60)
                                                                                   CGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCC      >  SRR4302532.5263084/1‑94 (MQ=60)
                                                                                   CGCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCC      >  SRR4302532.1327312/1‑94 (MQ=60)
                                                                                    GCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCA     >  SRR4302532.3908322/1‑94 (MQ=60)
                                                                                    GCCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCA     >  SRR4302532.2729093/1‑94 (MQ=60)
                                                                                     CCGCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCAT    >  SRR4302532.1677258/1‑94 (MQ=60)
                                                                                       GCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGTGAGCGTCCCATCA  <  SRR4302532.1477842/94‑1 (MQ=60)
                                                                                       GCTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCATCA  >  SRR4302532.3440879/1‑94 (MQ=60)
                                                                                        |                                                                                            
TCGCCTGCCAGGGCTTCAGTTGCCCGCGCCGCCAGTGCTTTGAGGATGTCCGCAGAAACGCGCACCGGGTTCAGCAGCCCCGCCGCCGTTTCAATCATCGGCAGGCCGTTTTCGCTGGCCTGGAATTGATAAGGCAGATGCGGATAGCGTTGCTGGATATCAGCCAGCGAGCGTCCCATCA  >  NC_000913/2656513‑2656693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑