Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,729,373 |
+C |
intergenic (‑195/+247) |
rrsG ← / ← clpB |
16S ribosomal RNA/ClpB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,729,371 | 1 | . | C | 99.3%
| 445.6
/ ‑3.8
| 136 | intergenic (‑193/+249) | rrsG/clpB | 16S ribosomal RNA/ClpB |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (65/70); total (65/71) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 139 total aligned reads displayed.
AAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG > NC_000913/2729307‑2729456
|
aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGc < 2:4811909/93‑1 (MQ=0)
aaaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGc < 1:2914058/93‑1 (MQ=0)
aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCt < 1:395775/93‑1 (MQ=9)
aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCt > 2:5909820/1‑93 (MQ=0)
aaTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCt > 1:2000124/1‑93 (MQ=0)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtt < 1:2267364/93‑1 (MQ=12)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtt > 1:5419969/1‑93 (MQ=9)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtt > 2:5545588/1‑93 (MQ=9)
aTTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtt > 2:2631348/1‑93 (MQ=9)
ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCttt < 1:4103476/93‑1 (MQ=16)
ttGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCttt < 1:4717209/93‑1 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 1:2243558/93‑1 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt > 2:5055473/1‑93 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt > 2:3989668/1‑93 (MQ=16)
tGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCtttt < 1:3106243/93‑1 (MQ=255)
gTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtc > 2:5503193/1‑93 (MQ=255)
ttgaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtct > 2:5358355/4‑93 (MQ=255)
tAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTtctc < 2:5584814/93‑1 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct < 2:444058/93‑1 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct > 1:1067526/1‑93 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct > 1:5378156/1‑93 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct > 2:4363418/1‑93 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct < 1:979543/93‑1 (MQ=255)
aaaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTctct < 1:1962556/93‑1 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg > 1:3093256/1‑93 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg < 1:5037772/93‑1 (MQ=255)
aaGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTg > 1:4852763/1‑93 (MQ=255)
agagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGt > 2:3912349/1‑93 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt < 1:384391/93‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt < 1:2428490/93‑1 (MQ=255)
gagCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGAGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGtt > 1:1859043/1‑93 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:293513/93‑1 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 2:3110469/93‑1 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:4553381/93‑1 (MQ=255)
gCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTga < 1:4442264/93‑1 (MQ=255)
aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgaga < 2:3460966/93‑1 (MQ=255)
aGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTgaga < 2:4833822/93‑1 (MQ=255)
gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt < 2:4724145/93‑1 (MQ=255)
gTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGGGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAt > 2:2127763/1‑93 (MQ=255)
tGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGAtt < 2:2673282/93‑1 (MQ=255)
gCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtc > 2:2816457/1‑93 (MQ=255)
ccGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtct > 2:2671835/1‑93 (MQ=255)
cgcttcgcttTTTCTCAGCGGCGCGGGGTGTGGATAATACGCCGTC‑CCGCTCCAGACTCAAGCATTTCTTTGCTTTTCTCTGTTTAGATtctc > 2:62343/1‑93 (MQ=17)
cgcttcgcttTTTCTCAGCGGCGCGGGGGGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATtctc > 2:62344/1‑93 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa > 1:2434884/1‑93 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa < 1:5911628/93‑1 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa > 2:5093155/1‑93 (MQ=255)
gcttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCa > 2:4883417/1‑93 (MQ=255)
cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 1:3985631/93‑1 (MQ=255)
cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg < 1:5065187/93‑1 (MQ=255)
cttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAg > 2:2876579/1‑93 (MQ=255)
ttcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAgg > 1:4717541/1‑93 (MQ=255)
tcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga < 1:1304978/93‑1 (MQ=255)
tcgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga < 1:4003997/93‑1 (MQ=255)
tagcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGga < 2:2263663/91‑1 (MQ=255)
cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag > 1:634650/1‑93 (MQ=255)
cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag < 2:3973459/93‑1 (MQ=255)
cgcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgag < 2:3973458/93‑1 (MQ=255)
gcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga < 1:4250557/93‑1 (MQ=255)
gcttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgaga < 2:2304108/93‑1 (MQ=255)
cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGgagga < 1:4311475/93‑3 (MQ=255)
cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGaa > 2:5389294/1‑93 (MQ=255)
cttTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGaa > 2:5507528/1‑93 (MQ=255)
tttttCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAc < 1:2755921/93‑1 (MQ=255)
ttttCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc > 2:239759/1‑93 (MQ=255)
ttttCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCACTGTTGAGATTCTCAGGAGAAcc > 1:4492902/1‑93 (MQ=255)
ttttCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAAAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcc > 2:2086388/1‑93 (MQ=255)
ttCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAcccc < 1:4760943/93‑1 (MQ=255)
ctcAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgc < 2:3888205/93‑1 (MQ=255)
tcAGCGGCGCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCccgcc < 2:904540/93‑1 (MQ=255)
gcggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 1:3586375/1‑93 (MQ=255)
gcggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 1:3878037/1‑93 (MQ=255)
gcggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 2:1519428/1‑93 (MQ=255)
gcggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 1:5121989/1‑93 (MQ=255)
gcggcgCGGGGGGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAc > 1:4054575/1‑93 (MQ=255)
cggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAcc > 1:1268075/1‑93 (MQ=255)
cggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAcc < 1:1736075/93‑1 (MQ=255)
ggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc < 1:5026355/93‑1 (MQ=255)
ggcgCGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAccc < 1:2457701/93‑1 (MQ=255)
gcgcGGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcg < 1:2222896/93‑1 (MQ=255)
gcgGGGTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggc > 1:4497676/1‑93 (MQ=255)
ggggTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcgg > 2:30747/1‑93 (MQ=255)
ggggTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcgg > 1:2574926/1‑93 (MQ=255)
ggggTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCcggcgg > 2:1623465/1‑93 (MQ=255)
gggTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCggcggc > 2:4268494/1‑93 (MQ=255)
gggTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCggcggc > 1:4153515/1‑93 (MQ=255)
ggTGTGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGgcggcg > 1:873894/1‑93 (MQ=255)
gtgtGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt < 1:3490610/93‑1 (MQ=255)
gtgtGCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgt > 2:646417/1‑93 (MQ=255)
tgtgCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCgtg > 2:880533/1‑93 (MQ=255)
tgCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt > 2:5036962/1‑93 (MQ=255)
tgCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt < 1:1909312/93‑1 (MQ=255)
tgCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGtt > 2:332298/1‑93 (MQ=255)
gCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGTTTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 2:498535/93‑1 (MQ=255)
gCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 2:153149/93‑1 (MQ=255)
gCATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGttt < 1:2897750/93‑1 (MQ=255)
cATAATACGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTg < 1:3566097/93‑1 (MQ=255)
taataCGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc > 2:1130875/1‑93 (MQ=255)
taataCGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc < 2:5223414/93‑1 (MQ=255)
taataCGCC‑TTCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGcc > 1:4454349/1‑93 (MQ=255)
|
AAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCC‑TT‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTG > NC_000913/2729307‑2729456
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > NC_000913/2729308‑2729466
|
AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTT < SRR4302532.409624/94‑1 (MQ=0)
ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTT < SRR4302532.2342618/94‑1 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302532.4878155/94‑1 (MQ=0)
TTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTT < SRR4302532.4241207/94‑1 (MQ=0)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302532.2318014/94‑1 (MQ=2)
TGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTC < SRR4302532.3209265/94‑1 (MQ=2)
TAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCT > SRR4302532.1103416/1‑94 (MQ=10)
TAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCT > SRR4302532.5564448/1‑94 (MQ=10)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG < SRR4302532.1012977/94‑1 (MQ=12)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG > SRR4302532.3195783/1‑94 (MQ=12)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG < SRR4302532.2027731/94‑1 (MQ=12)
AAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTG > SRR4302532.5019749/1‑94 (MQ=12)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT > SRR4302532.4144210/1‑94 (MQ=20)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT < SRR4302532.3014888/94‑1 (MQ=20)
AAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGT < SRR4302532.5210560/94‑1 (MQ=20)
AGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGAGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTT > SRR4302532.1920675/1‑94 (MQ=21)
AGAGCAGTCCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTCCTCTGTT < SRR4302532.4626654/94‑1 (MQ=4)
GAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTG < SRR4302532.2509206/94‑1 (MQ=25)
GAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTG < SRR4302532.397831/94‑1 (MQ=25)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302532.4593644/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302532.4708748/94‑1 (MQ=29)
GCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAG < SRR4302532.303631/94‑1 (MQ=29)
CAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGA > SRR4302532.1601375/1‑94 (MQ=32)
GTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATT < SRR4302532.2004308/94‑1 (MQ=37)
GCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCT < SRR4302532.1009346/94‑1 (MQ=42)
CGCTTCGTTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCTCC‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCA < SRR4302532.3889333/94‑1 (MQ=43)
CGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCA > SRR4302532.2515829/1‑94 (MQ=47)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG < SRR4302532.2938725/94‑1 (MQ=49)
GCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAG < SRR4302532.6116362/94‑1 (MQ=49)
CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGG < SRR4302532.4119894/94‑1 (MQ=51)
CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGG < SRR4302532.5239145/94‑1 (MQ=51)
CTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGG > SRR4302532.4878502/1‑94 (MQ=51)
TCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG > SRR4302532.656795/1‑94 (MQ=56)
TCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG < SRR4302532.4138885/94‑1 (MQ=56)
TCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAG < SRR4302532.1348654/94‑1 (MQ=56)
GCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAA < SRR4302532.4393387/94‑1 (MQ=60)
GCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAA < SRR4302532.4269139/94‑1 (MQ=60)
CTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGGAC < SRR4302532.4457237/94‑1 (MQ=55)
CTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAC > SRR4302532.3551424/1‑94 (MQ=60)
TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACC < SRR4302532.2848477/94‑1 (MQ=60)
TTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCACTGTTGAGATTCTCAGGAGAACC > SRR4302532.4646296/1‑94 (MQ=52)
tatgCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCC < SRR4302532.4527060/90‑1 (MQ=60)
TTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCC < SRR4302532.4055068/94‑1 (MQ=60)
TTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCG < SRR4302532.4923938/94‑1 (MQ=60)
AGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAC > SRR4302532.4008940/1‑94 (MQ=60)
AGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAC > SRR4302532.3706344/1‑94 (MQ=60)
AGCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAC > SRR4302532.5298190/1‑94 (MQ=60)
AGCGGCGCGGGGGGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGAC > SRR4302532.4190945/1‑94 (MQ=60)
GCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACC > SRR4302532.1310492/1‑94 (MQ=60)
GCGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACC > SRR4302532.2119043/1‑94 (MQ=60)
CGGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCC < SRR4302532.1794508/94‑1 (MQ=60)
GGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG < SRR4302532.2539450/94‑1 (MQ=60)
GGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG < SRR4302532.5198761/94‑1 (MQ=60)
GGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG < SRR4302532.5198759/94‑1 (MQ=60)
GGCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCG > SRR4302532.2268759/1‑94 (MQ=60)
GCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGG < SRR4302532.2296690/94‑1 (MQ=60)
GCGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGG < SRR4302532.5398825/94‑1 (MQ=60)
CGCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGC > SRR4302532.4651218/1‑94 (MQ=60)
GCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCG < SRR4302532.2417943/94‑1 (MQ=60)
GCGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCG < SRR4302532.5964994/94‑1 (MQ=60)
CGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGG > SRR4302532.2660944/1‑94 (MQ=60)
CGGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGG < SRR4302532.5015816/94‑1 (MQ=60)
GGGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGC > SRR4302532.4292851/1‑94 (MQ=60)
GGGTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCG > SRR4302532.903804/1‑94 (MQ=60)
GTGTGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTG < SRR4302532.3607564/94‑1 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302532.4551405/94‑1 (MQ=60)
TGCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTT < SRR4302532.1972699/94‑1 (MQ=60)
GCATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTG < SRR4302532.2994477/94‑1 (MQ=60)
CATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGC < SRR4302532.3685422/94‑1 (MQ=60)
ATAATACGCCT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCC > SRR4302532.4606161/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG > SRR4302532.1337519/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCG > SRR4302532.3285066/1‑94 (MQ=60)
CT‑TCCCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAAACCCGCCGACCCGGCGGAGTGGTTGCCGTTGATCCG > SRR4302532.3111596/1‑94 (MQ=60)
C‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGT < SRR4302532.6209734/94‑1 (MQ=60)
C‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGT > SRR4302532.658074/1‑94 (MQ=60)
CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCG > SRR4302532.1818353/1‑94 (MQ=60)
CGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA < SRR4302532.119766/94‑1 (MQ=60)
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AATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCGCGGGGTGTGCATAATACGCCT‑T‑CCGCTACAGAGTCAAGCATTTCTTTGCTTTTCTCTGTTGAGATTCTCAGGAGAACCCCGCCGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCA > NC_000913/2729308‑2729466
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
