Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,897,800	A→G	Y166H (TAT→CAT)	b2774 ←	putative oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,897,800	0	A	G	95.8%	878.0 / 18.8	259	Y166H (TAT→CAT)	b2774	putative oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (5/6); new base G (138/110); total (143/116)
Fisher's exact test for biased strand distribution p-value = 5.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.18e-01

Only 100 of 265 total aligned reads displayed.

GGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCAG  >  NC_000913/2897710‑2897889

gggCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAAtgtg                                                                                         <  1:4809705/93‑1 (MQ=255)

 ggCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGc                                                                                        <  2:636698/93‑1 (MQ=255)

  gCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGTCAAGAGCATGTTTAGTGGCAGAATGTGCa                                                                                       >  2:956615/1‑93 (MQ=255)

   cGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAg                                                                                      >  1:6119675/1‑93 (MQ=255)

    gATACCATTTACCTGAATATTATATTGACGTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAgg                                                                                     >  1:3884851/1‑93 (MQ=255)

    gATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAgg                                                                                     <  2:3766258/93‑1 (MQ=255)

    gATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAgg                                                                                     >  1:4851036/1‑93 (MQ=255)

    gATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAgg                                                                                     <  1:4051715/93‑1 (MQ=255)

    gATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAgg                                                                                     <  2:2235749/93‑1 (MQ=255)

     aTACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGt                                                                                    <  2:5071038/93‑1 (MQ=255)

      tACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTg                                                                                   >  2:4334581/1‑93 (MQ=255)

      tACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTg                                                                                   >  2:1002848/1‑93 (MQ=255)

       aCCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGa                                                                                  >  2:3887640/1‑93 (MQ=255)

        ccATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAACAGCAGGATTAAGGGCAGAATATGCAGGGGAc                                                                                 >  1:5893315/1‑93 (MQ=255)

         cATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGAcc                                                                                >  2:2555856/1‑93 (MQ=255)

          aTTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCa                                                                               >  2:1364245/1‑93 (MQ=255)

           tttACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAt                                                                              >  1:839377/1‑93 (MQ=255)

           tttACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAt                                                                              >  1:3559835/1‑93 (MQ=255)

              aCCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGt                                                                           <  2:1057424/93‑1 (MQ=255)

              aCCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGt                                                                           >  2:560291/1‑93 (MQ=255)

              aCCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGt                                                                           >  2:3561548/1‑93 (MQ=255)

              aCCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTAACCATTGt                                                                           >  2:2010563/1‑93 (MQ=255)

                cTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTcc                                                                         >  1:5887164/1‑93 (MQ=255)

                cTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTcc                                                                         <  1:546002/93‑1 (MQ=255)

                 tGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCa                                                                        >  1:1309787/1‑93 (MQ=255)

                  gAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCAc                                                                       <  1:1184180/93‑1 (MQ=255)

                  gAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCAc                                                                       <  2:3321699/93‑1 (MQ=255)

                   aaTATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCAcc                                                                      >  1:719613/1‑93 (MQ=255)

                   aaTATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCAcc                                                                      >  2:2194061/1‑93 (MQ=255)

                   aaTATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCAcc                                                                      >  2:5564498/1‑93 (MQ=255)

                    atattatattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCt                                                                     <  1:4361131/93‑1 (MQ=255)

                    atattatattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCt                                                                     >  1:2371819/1‑93 (MQ=255)

                     tattatattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCta                                                                    >  1:4208895/1‑93 (MQ=255)

                      attatattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCtaa                                                                   <  1:3669263/93‑1 (MQ=255)

                      attatattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCtaa                                                                   >  2:5101298/1‑93 (MQ=255)

                          tattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACgtaagtaa                                                               <  1:448159/93‑1 (MQ=255)

                          tattGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCtaagtaa                                                               >  2:1886948/1‑93 (MQ=255)

                             tGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAagag                                                            <  2:610499/93‑1 (MQ=255)

                             tGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAagag                                                            <  1:5299429/93‑1 (MQ=255)

                             tGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAagag                                                            <  1:3021129/93‑1 (MQ=255)

                              gACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAgaga                                                           <  1:4459262/93‑1 (MQ=255)

                               aCCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGaa                                                          <  1:2199419/93‑1 (MQ=255)

                               aCCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGaa                                                          >  2:4385068/1‑93 (MQ=255)

                                ccTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAAc                                                         <  1:5373311/93‑1 (MQ=255)

                                    gTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATg                                                     <  1:2642706/93‑1 (MQ=255)

                                     ttCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGa                                                    >  1:3342836/1‑93 (MQ=255)

                                     ttCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGa                                                    >  2:2991302/1‑93 (MQ=255)

                                     ttCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGa                                                    <  2:3141671/93‑1 (MQ=255)

                                     ttCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGa                                                    <  2:350911/93‑1 (MQ=255)

                                     ttCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGa                                                    <  1:1455612/93‑1 (MQ=255)

                                      tcatcaCAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGaa                                                   >  1:3787602/1‑93 (MQ=255)

                                      tcatcaCAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGaa                                                   <  2:1295994/93‑1 (MQ=255)

                                      tcatcaCAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGaa                                                   >  1:4878160/1‑93 (MQ=255)

                                        atcaCAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACa                                                 <  1:1005241/93‑1 (MQ=255)

                                        atcaCAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACa                                                 <  1:3950510/93‑1 (MQ=255)

                                        atcaCAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACa                                                 >  1:2291794/1‑93 (MQ=255)

                                          cacaATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGa                                               >  1:1536957/1‑93 (MQ=255)

                                           acaATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGat                                              <  2:3629647/93‑1 (MQ=255)

                                            caATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGata                                             <  1:1069305/93‑1 (MQ=255)

                                            caATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGata                                             <  1:1532888/93‑1 (MQ=255)

                                             aaTAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGatat                                            <  1:4579668/93‑1 (MQ=255)

                                              aTAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATAtt                                           >  2:5326051/1‑93 (MQ=255)

                                              aTAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATAtt                                           <  2:371641/93‑1 (MQ=255)

                                                aaGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaa                                         <  1:674850/93‑1 (MQ=255)

                                                aaGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaa                                         <  2:2107965/93‑1 (MQ=255)

                                                 aGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaat                                        <  1:1909956/93‑1 (MQ=255)

                                                  gCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaata                                       <  1:3604521/93‑1 (MQ=255)

                                                  gCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaata                                       <  1:2408296/93‑1 (MQ=255)

                                                   cTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaataa                                      <  2:4583796/93‑1 (MQ=255)

                                                   cTTTGGTGAACCCGGCAAGAGCACGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATtaataa                                      <  1:4473566/93‑1 (MQ=255)

                                                    tttGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTaataat                                     >  2:5214390/1‑93 (MQ=255)

                                                    tttGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTaataat                                     <  2:5241500/93‑1 (MQ=255)

                                                    tttGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTaataat                                     <  2:5632598/93‑1 (MQ=255)

                                                     ttGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAAtt                                    >  2:4971278/1‑93 (MQ=255)

                                                          gAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGcc                               <  2:1538755/93‑1 (MQ=255)

                                                          gAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGcc                               <  2:4672427/93‑1 (MQ=255)

                                                          gAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGcc                               >  2:417830/1‑93 (MQ=255)

                                                          gAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGcc                               <  1:5714929/93‑1 (MQ=255)

                                                            aCCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCgt                             >  2:593687/1‑92 (MQ=255)

                                                            aCCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGc                             <  2:4513695/93‑1 (MQ=255)

                                                                ggCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCtttt                         >  2:1112863/1‑93 (MQ=255)

                                                                 gCAAGAGCATGGTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTc                        >  2:2423333/1‑93 (MQ=255)

                                                                  cAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCt                       <  1:3852457/93‑1 (MQ=255)

                                                                  cAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCt                       >  1:1971317/1‑93 (MQ=255)

                                                                    agagCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGc                     >  1:1804384/1‑93 (MQ=255)

                                                                    agagCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGc                     <  2:341959/93‑1 (MQ=255)

                                                                    agagCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGc                     >  1:1690607/1‑93 (MQ=255)

                                                                      agCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCGCCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCgg                   <  1:4729123/93‑1 (MQ=255)

                                                                      agCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCgg                   >  1:2957877/1‑93 (MQ=255)

                                                                       gCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCggg                  <  1:559827/93‑1 (MQ=255)

                                                                         aTGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGAt                <  2:406779/93‑1 (MQ=255)

                                                                            tttAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCAt             >  1:1673942/1‑93 (MQ=255)

                                                                            tttAGTGGCAAAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCAt             <  1:5161115/93‑1 (MQ=255)

                                                                                 tGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCCGCGGGATCATAAttt        >  1:4983417/1‑93 (MQ=255)

                                                                                  ggCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAAtttt       >  2:807358/1‑93 (MQ=255)

                                                                                   gCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAAttttt      <  2:2709624/93‑1 (MQ=255)

                                                                                   gCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAAttttt      <  2:485082/93‑1 (MQ=255)

                                                                                   gCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAAttttt      >  2:1758866/1‑93 (MQ=255)

                                                                                     aGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGc    <  2:5947895/93‑1 (MQ=255)

                                                                                      gAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCa   >  2:3757558/1‑93 (MQ=255)

GGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCAG  >  NC_000913/2897710‑2897889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCAGCTT  >  NC_000913/2897707‑2897892

CAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATG                                                                                              >  SRR4302532.5127485/1‑94 (MQ=60)

CAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATG                                                                                              >  SRR4302532.5224981/1‑94 (MQ=60)

CAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATG                                                                                              >  SRR4302532.5761228/1‑94 (MQ=60)

 AGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGT                                                                                             >  SRR4302532.5744243/1‑94 (MQ=60)

   GGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGC                                                                                           <  SRR4302532.4975338/94‑1 (MQ=60)

     GCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAG                                                                                         <  SRR4302532.198876/94‑1 (MQ=60)

     GCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAG                                                                                         >  SRR4302532.6330861/1‑94 (MQ=60)

      CGATACCATTTACCTGAATATTATATTGACGTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGG                                                                                        >  SRR4302532.4015955/1‑94 (MQ=60)

      CGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGG                                                                                        >  SRR4302532.5017976/1‑94 (MQ=60)

       GATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGT                                                                                       <  SRR4302532.4188039/94‑1 (MQ=60)

        ATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTG                                                                                      >  SRR4302532.4620122/1‑94 (MQ=60)

        ATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTG                                                                                      >  SRR4302532.4620121/1‑94 (MQ=60)

          ACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAACAGCAGGATTAAGGGCAGAATATGCAGGGGAC                                                                                    >  SRR4302532.6097410/1‑94 (MQ=60)

           CCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACC                                                                                   >  SRR4302532.3799147/1‑94 (MQ=60)

             ATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAT                                                                                 >  SRR4302532.586984/1‑94 (MQ=60)

             ATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAT                                                                                 >  SRR4302532.4979371/1‑94 (MQ=60)

             ATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAT                                                                                 >  SRR4302532.3678951/1‑94 (MQ=60)

             ATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAT                                                                                 >  SRR4302532.4126079/1‑94 (MQ=60)

             ATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCAT                                                                                 >  SRR4302532.868180/1‑94 (MQ=60)

              TTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATT                                                                                <  SRR4302532.6096767/94‑1 (MQ=60)

                TACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGT                                                                              <  SRR4302532.174596/94‑1 (MQ=60)

                 ACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTC                                                                             >  SRR4302532.3356907/1‑94 (MQ=60)

                 ACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTC                                                                             >  SRR4302532.4073276/1‑94 (MQ=60)

                  CCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCC                                                                            >  SRR4302532.6091037/1‑94 (MQ=60)

                  CCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCC                                                                            >  SRR4302532.2324241/1‑94 (MQ=60)

                   CTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCC                                                                           >  SRR4302532.688763/1‑94 (MQ=60)

                   CTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCA                                                                           >  SRR4302532.5293641/1‑94 (MQ=60)

                   CTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCA                                                                           >  SRR4302532.749228/1‑94 (MQ=60)

                   CTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCA                                                                           >  SRR4302532.1353618/1‑94 (MQ=60)

                   CTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCA                                                                           <  SRR4302532.565021/94‑1 (MQ=60)

                     GAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACC                                                                         >  SRR4302532.744177/1‑94 (MQ=60)

                     GAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACC                                                                         <  SRR4302532.1223745/94‑1 (MQ=60)

                      AATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCCAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCT                                                                        >  SRR4302532.2418980/1‑94 (MQ=60)

                      AATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCT                                                                        >  SRR4302532.2450890/1‑94 (MQ=60)

                      AATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCT                                                                        >  SRR4302532.2905730/1‑94 (MQ=60)

                       ATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTA                                                                       >  SRR4302532.684735/1‑94 (MQ=60)

                       ATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTA                                                                       <  SRR4302532.4508921/94‑1 (MQ=60)

                       ATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTA                                                                       >  SRR4302532.4350181/1‑94 (MQ=60)

                        TATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAA                                                                      >  SRR4302532.924359/1‑94 (MQ=60)

                         ATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAG                                                                     <  SRR4302532.3792519/94‑1 (MQ=60)

                          TTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGT                                                                    <  SRR4302532.5637898/94‑1 (MQ=60)

                          TTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGT                                                                    >  SRR4302532.5012940/1‑94 (MQ=60)

                             TATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACGTAAGTAAG                                                                 <  SRR4302532.463717/94‑1 (MQ=60)

                             TATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAG                                                                 >  SRR4302532.3769551/1‑94 (MQ=60)

                             TATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAG                                                                 >  SRR4302532.3632785/1‑94 (MQ=60)

                             TATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAG                                                                 <  SRR4302532.463716/94‑1 (MQ=60)

                                TGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGA                                                              <  SRR4302532.3120789/94‑1 (MQ=60)

                                TGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGA                                                              <  SRR4302532.5482517/94‑1 (MQ=60)

                                 TACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAA                                                             <  SRR4302532.4611264/94‑1 (MQ=60)

                                 TACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAAGGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAA                                                             <  SRR4302532.4611265/94‑1 (MQ=60)

                                 GACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAA                                                             <  SRR4302532.4611270/94‑1 (MQ=60)

                                 GACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAA                                                             >  SRR4302532.5962163/1‑94 (MQ=60)

                                 GACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAA                                                             >  SRR4302532.3552849/1‑94 (MQ=60)

                                  ACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAAC                                                            <  SRR4302532.2272643/94‑1 (MQ=60)

                                  ACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAAC                                                            >  SRR4302532.398061/1‑94 (MQ=60)

                                  ACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAAC                                                            >  SRR4302532.5361550/1‑94 (MQ=60)

                                   CCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACA                                                           >  SRR4302532.1065462/1‑94 (MQ=60)

                                   CCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACA                                                           <  SRR4302532.4310847/94‑1 (MQ=60)

                                   CCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACA                                                           <  SRR4302532.4706646/94‑1 (MQ=60)

                                   CCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACA                                                           <  SRR4302532.5559477/94‑1 (MQ=60)

                                    CTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAA                                                          >  SRR4302532.1950893/1‑94 (MQ=60)

                                    CTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAA                                                          >  SRR4302532.5575818/1‑94 (MQ=60)

                                    CTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAA                                                          <  SRR4302532.1401799/94‑1 (MQ=60)

                                     TAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAAT                                                         <  SRR4302532.4014154/94‑1 (MQ=60)

                                      agtaaacaaaAATAAGCTTTGGTGAACCGGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCAGCTAAGTAAGAGAACAATG                                                        <  SRR4302532.4187798/84‑1 (MQ=60)

                                      AGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATG                                                        <  SRR4302532.2837374/94‑1 (MQ=60)

                                       GTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGA                                                       <  SRR4302532.2731338/94‑1 (MQ=60)

                                       GTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGA                                                       >  SRR4302532.3454403/1‑94 (MQ=60)

                                        TTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAA                                                      <  SRR4302532.1504684/94‑1 (MQ=60)

                                        TTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAA                                                      >  SRR4302532.5045881/1‑94 (MQ=60)

                                        TTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAA                                                      >  SRR4302532.3915374/1‑94 (MQ=60)

                                          CATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACA                                                    <  SRR4302532.2445203/94‑1 (MQ=60)

                                          CATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACA                                                    >  SRR4302532.2367862/1‑94 (MQ=60)

                                           ATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAG                                                   <  SRR4302532.1039447/94‑1 (MQ=60)

                                           ATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAG                                                   <  SRR4302532.4083648/94‑1 (MQ=60)

                                            TCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGA                                                  >  SRR4302532.1588896/1‑94 (MQ=60)

                                            TCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGA                                                  >  SRR4302532.1588897/1‑94 (MQ=60)

                                             CACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGAT                                                 >  SRR4302532.2663917/1‑94 (MQ=60)

                                              ACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATA                                                <  SRR4302532.6110743/94‑1 (MQ=60)

                                               CAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATAT                                               <  SRR4302532.1105243/94‑1 (MQ=60)

                                               CAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATAT                                               >  SRR4302532.4412693/1‑94 (MQ=60)

                                               CAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATAT                                               <  SRR4302532.1584685/94‑1 (MQ=60)

                                                AATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATT                                              <  SRR4302532.4735822/94‑1 (MQ=60)

                                                 ATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTA                                             >  SRR4302532.6070779/1‑94 (MQ=60)

                                                  TAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAA                                            <  SRR4302532.1741305/94‑1 (MQ=60)

                                                   AAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAAT                                           <  SRR4302532.698077/94‑1 (MQ=60)

                                                   AAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAAT                                           >  SRR4302532.5281263/1‑94 (MQ=60)

                                                    AGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATA                                          <  SRR4302532.1973381/94‑1 (MQ=60)

                                                    AGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATA                                          <  SRR4302532.3987847/94‑1 (MQ=60)

                                                     GCTTTGTTGAACCCGTCAAGAGCATGTTTAGTGGCAGAAGGTGCAGGGGACCAGGGTCTACCTAAGTAAGATAACATTGAACAGATATGAATAA                                         >  SRR4302532.4926405/1‑94 (MQ=32)

                                                     GCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAA                                         <  SRR4302532.3724999/94‑1 (MQ=60)

                                                     GCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAA                                         <  SRR4302532.2488428/94‑1 (MQ=60)

                                                     GCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAA                                         <  SRR4302532.1247922/94‑1 (MQ=60)

                                                      CTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAAT                                        <  SRR4302532.1584510/94‑1 (MQ=60)

                                                      CTTTGGTGAACCCGGCAAGAGCACGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAAT                                        <  SRR4302532.4626134/94‑1 (MQ=60)

                                                       TTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATT                                       >  SRR4302532.4710505/1‑94 (MQ=60)

                                                       TTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATT                                       <  SRR4302532.5549134/94‑1 (MQ=60)

                                                       TTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATT                                       >  SRR4302532.5838736/1‑94 (MQ=60)

                                                        TTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTT                                      <  SRR4302532.1213112/94‑1 (MQ=60)

                                                          GGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTG                                    <  SRR4302532.3971444/94‑1 (MQ=60)

                                                          GGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTG                                    <  SRR4302532.2274360/94‑1 (MQ=60)

                                                           GTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGC                                   >  SRR4302532.6207833/1‑94 (MQ=60)

                                                             GAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCG                                 <  SRR4302532.5914055/94‑1 (MQ=60)

                                                             GAACCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCG                                 <  SRR4302532.1982740/94‑1 (MQ=60)

                                                                CCCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTT                              >  SRR4302532.2493292/1‑94 (MQ=60)

                                                                 CCGGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTT                             <  SRR4302532.3165581/94‑1 (MQ=60)

                                                                   GGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTC                           >  SRR4302532.576316/1‑94 (MQ=60)

                                                                   GGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTC                           >  SRR4302532.4881163/1‑94 (MQ=60)

                                                                   GGCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTC                           >  SRR4302532.5140934/1‑94 (MQ=60)

                                                                   GGCAAGAGCATGTTTAGCGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTC                           >  SRR4302532.3790727/1‑94 (MQ=60)

                                                                    GCAAGAGGATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCT                          <  SRR4302532.1490377/94‑1 (MQ=60)

                                                                    GCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCT                          >  SRR4302532.2036801/1‑94 (MQ=60)

                                                                    GCAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCT                          <  SRR4302532.5043662/94‑1 (MQ=60)

                                                                     CAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTG                         <  SRR4302532.1628428/94‑1 (MQ=60)

                                                                     CAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTG                         <  SRR4302532.3982525/94‑1 (MQ=60)

                                                                     CAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTG                         <  SRR4302532.4840805/94‑1 (MQ=60)

                                                                     CAAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTG                         >  SRR4302532.1748025/1‑94 (MQ=60)

                                                                      AAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGC                        >  SRR4302532.1747700/1‑94 (MQ=60)

                                                                      AAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGC                        >  SRR4302532.2455300/1‑94 (MQ=60)

                                                                      AAGAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGC                        >  SRR4302532.1864617/1‑94 (MQ=60)

                                                                       AGACCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCG                       >  SRR4302532.1556008/1‑94 (MQ=60)

                                                                        GAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGG                      >  SRR4302532.3055877/1‑94 (MQ=60)

                                                                        GAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGG                      >  SRR4302532.3055876/1‑94 (MQ=60)

                                                                        AAGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGG                      <  SRR4302532.1617263/94‑1 (MQ=60)

                                                                         AGCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCGCCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGG                     <  SRR4302532.4890536/94‑1 (MQ=60)

                                                                          GCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGA                    <  SRR4302532.502198/94‑1 (MQ=60)

                                                                          GCATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGA                    <  SRR4302532.579342/94‑1 (MQ=60)

                                                                           CATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGAT                   >  SRR4302532.1932454/1‑94 (MQ=60)

                                                                            ATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATC                  >  SRR4302532.5428296/1‑94 (MQ=60)

                                                                            ATGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATC                  >  SRR4302532.433518/1‑94 (MQ=60)

                                                                             TGTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCA                 >  SRR4302532.766998/1‑94 (MQ=60)

                                                                              GTTTAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCAT                >  SRR4302532.1730549/1‑94 (MQ=60)

                                                                               TTTAGTGGCAAAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATA               <  SRR4302532.5338737/94‑1 (MQ=60)

                                                                                 TAGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAAT             <  SRR4302532.2094881/94‑1 (MQ=60)

                                                                                  AGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATT            >  SRR4302532.4152335/1‑94 (MQ=60)

                                                                                  AGTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATT            >  SRR4302532.1157371/1‑94 (MQ=60)

                                                                                  AGTGGCAGAATGGGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGTACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAAGT            >  SRR4302532.3682540/1‑94 (MQ=60)

                                                                                   GTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTT           <  SRR4302532.738842/94‑1 (MQ=60)

                                                                                   GTGGCAGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCCGCGGGATCATAATTT           >  SRR4302532.5154249/1‑94 (MQ=60)

                                                                                        AGAATGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCA      >  SRR4302532.92691/1‑94 (MQ=60)

                                                                                            TGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCAGCTT  <  SRR4302532.727971/94‑1 (MQ=60)

                                                                                            TGTGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCAGCTT  <  SRR4302532.6183754/94‑1 (MQ=60)

CAGGGGCGATACCATTTACCTGAATATTATATTGACCTAGTTCATCACAATAAGCTTTGGTGAACCCGGCAAGAGCATGTTTAGTGGCAGAATATGCAGGTGACCATTGTCCACCTAAGTAAGAGAACAATGAACAGATATTAATAATTTTGCCGCTTTTCTGCGGGATCATAATTTTTGCAGCTT  >  NC_000913/2897707‑2897892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`