Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,537,405 |
+GC |
intergenic (+61/‑394) |
b3407 → / → feoA |
hypothetical protein/ferrous iron transport protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,537,404 | 1 | . | C | 100.0%
| 743.2
/ NA
| 210 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (100/110); total (100/110) |
| * | NC_000913 | 3,537,404 | 2 | . | G | 100.0%
| 743.0
/ NA
| 210 | intergenic (+60/‑395) | b3407/feoA | hypothetical protein/ferrous iron transport protein A |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (100/110); total (100/110) |
Only 100 of 223 total aligned reads displayed.
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
||
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑c < 2:447363/93‑1 (MQ=255)
cgcTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑c < 1:5286850/93‑1 (MQ=255)
cTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑cgc < 2:5028082/93‑3 (MQ=255)
ggcAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTg < 1:3354424/93‑1 (MQ=38)
cAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGc < 1:5620444/93‑1 (MQ=37)
cAATGGGAAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGc < 2:1429567/93‑1 (MQ=37)
aaTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCa > 1:5170770/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaa > 2:3476575/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaa > 2:3180887/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaa > 2:5660918/1‑93 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaa < 2:4345682/93‑1 (MQ=37)
aTGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaa > 1:682374/1‑93 (MQ=37)
tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaac > 2:5309415/1‑93 (MQ=37)
tGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaac > 1:4347092/1‑93 (MQ=37)
gggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAAATTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGGaacg > 1:459355/1‑93 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGTTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacga < 1:2616029/93‑1 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacga > 1:5077125/1‑93 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacga > 2:24101/1‑93 (MQ=37)
ggCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacga > 2:3441875/1‑93 (MQ=37)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacgaa < 1:798121/93‑1 (MQ=38)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacgaa < 1:3281990/93‑1 (MQ=37)
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacgaa < 2:2927979/93‑1 (MQ=38)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacgaac > 1:4922903/1‑93 (MQ=37)
cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacgaac < 2:354690/93‑1 (MQ=37)
aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCaacgaacg > 2:3618386/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGc > 2:5860271/1‑93 (MQ=37)
aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGc > 1:5716726/1‑93 (MQ=37)
aacaCGTTAAACGCGCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGcc < 2:4330066/90‑1 (MQ=25)
aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGcc < 1:4750676/93‑1 (MQ=37)
aaaCGTTAACCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCt < 1:1850463/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCt > 2:1026243/1‑93 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCt > 2:3354975/1‑93 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCt < 1:1119326/93‑1 (MQ=37)
aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCt < 1:4594771/93‑1 (MQ=37)
aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTg > 2:1251271/1‑93 (MQ=37)
gtaaaaCGCCCTTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGcc < 1:1446408/90‑1 (MQ=25)
ttAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCt < 1:5240140/93‑1 (MQ=37)
tAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTg < 1:3668540/93‑1 (MQ=37)
attcGCCCGTACTGGCCTACGGTTCGTATTTGCACGATATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTGGCCCGa > 1:5493614/4‑93 (MQ=21)
aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGAc > 1:3148921/1‑93 (MQ=38)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACa < 1:2563187/93‑1 (MQ=37)
aCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTCGCCTGACa > 1:4827028/1‑93 (MQ=37)
ccccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTCACATa < 1:2092264/92‑1 (MQ=37)
cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaa < 2:6027164/93‑1 (MQ=37)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa > 2:4852685/1‑93 (MQ=38)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa < 2:5528975/93‑1 (MQ=37)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa > 2:750530/1‑93 (MQ=38)
ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaa > 1:2352926/1‑93 (MQ=38)
cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa < 2:1826088/93‑1 (MQ=37)
gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg < 1:1626188/93‑1 (MQ=37)
tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGt < 2:4585664/93‑1 (MQ=37)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg > 2:3998498/1‑93 (MQ=37)
aCTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg < 2:831931/93‑1 (MQ=37)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc < 2:1063538/93‑1 (MQ=37)
cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc > 1:4411616/1‑93 (MQ=37)
tGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc > 2:4175126/1‑93 (MQ=37)
ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg < 1:169777/93‑1 (MQ=37)
ggCCTACGGTTCGAATTTGCACGAAATCATAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg > 2:394628/1‑93 (MQ=38)
gCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg > 1:5852215/1‑93 (MQ=38)
gCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg < 1:1887480/93‑1 (MQ=37)
gCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg > 2:5137737/1‑93 (MQ=38)
tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgaga > 1:2997306/1‑93 (MQ=38)
aCGGTTTGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 2:1011971/93‑1 (MQ=37)
aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa < 2:5783659/93‑1 (MQ=37)
ggTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata < 2:4130753/93‑1 (MQ=37)
gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat < 1:268056/93‑1 (MQ=37)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc < 2:892032/93‑1 (MQ=37)
ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtc < 1:3892657/93‑1 (MQ=37)
tCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtct > 2:3752002/1‑93 (MQ=38)
cGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc < 2:1373785/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 2:5438628/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 2:676215/93‑1 (MQ=37)
gAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTcc < 2:2095278/93‑1 (MQ=37)
aaTTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCg < 2:369657/93‑1 (MQ=37)
tGCAGGAAAGGGTAGGGCAGATAGGGCCT‑‑CCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAt < 1:1232609/93‑1 (MQ=255)
tGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAt < 1:2411557/93‑1 (MQ=38)
gCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtt > 2:4886693/1‑93 (MQ=38)
aCGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAtttt < 2:5746260/93‑1 (MQ=38)
cGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttttt < 2:1762415/93‑1 (MQ=38)
gAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa < 1:2212357/93‑1 (MQ=38)
gAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTa < 1:2798749/93‑1 (MQ=38)
aaaTCGTAGGACAGATAAGGCGTCGACG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAt < 1:4494802/93‑1 (MQ=37)
aTCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc < 2:301591/93‑1 (MQ=38)
tCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc > 1:605439/1‑93 (MQ=38)
tCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc > 1:3975061/1‑93 (MQ=38)
tCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc > 1:3083943/1‑93 (MQ=38)
gTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTTTTctcc > 1:1197968/1‑90 (MQ=37)
gTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac < 2:2848195/93‑1 (MQ=38)
gTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac > 2:5495642/1‑93 (MQ=38)
gTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac < 1:2474206/93‑1 (MQ=38)
gTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac < 1:2307559/93‑1 (MQ=38)
gTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac < 1:1138669/93‑1 (MQ=38)
tAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca > 1:413429/1‑93 (MQ=38)
tAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcaca < 1:3451684/93‑1 (MQ=38)
gaaGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCa < 1:3584488/91‑1 (MQ=38)
aGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa < 1:5675702/93‑1 (MQ=38)
gATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc > 1:5912889/1‑93 (MQ=39)
aTAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACt > 1:4652218/1‑93 (MQ=39)
aaGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCa > 1:4662936/1‑93 (MQ=39)
aGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat < 2:1992872/93‑1 (MQ=39)
||
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA > NC_000913/3537312‑3537487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537312‑3537498
|
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑C < SRR4302532.5223310/94‑1 (MQ=60)
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑CG > SRR4302532.2236278/1‑94 (MQ=60)
CGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑CG < SRR4302532.5469223/94‑1 (MQ=60)
CGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCCAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCAT < SRR4302532.894909/94‑1 (MQ=60)
CGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTG > SRR4302532.4742021/1‑94 (MQ=60)
GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGTCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGG < SRR4302532.4084938/94‑1 (MQ=60)
GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGG < SRR4302532.3466417/94‑1 (MQ=60)
GGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGG < SRR4302532.6065643/94‑1 (MQ=60)
GCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGC < SRR4302532.3479489/94‑1 (MQ=60)
GCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGC > SRR4302532.3436461/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCA > SRR4302532.5348857/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCA > SRR4302532.254234/1‑94 (MQ=60)
CAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCA < SRR4302532.5815467/94‑1 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAA > SRR4302532.705820/1‑94 (MQ=60)
AATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAA > SRR4302532.6131585/1‑94 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAAC < SRR4302532.3240568/94‑1 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAAC > SRR4302532.5715117/1‑94 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAAC > SRR4302532.4494008/1‑94 (MQ=60)
ATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAAC > SRR4302532.1261414/1‑94 (MQ=60)
TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTATGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACG > SRR4302532.5659341/1‑94 (MQ=60)
TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACG > SRR4302532.475334/1‑94 (MQ=60)
TGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAAATTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGGAACG > SRR4302532.475333/1‑94 (MQ=60)
GGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGA > SRR4302532.5251672/1‑94 (MQ=60)
GGCAAAAAACGTTAAACGCCCGTACTGGCCTACGTTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAA < SRR4302532.2703573/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAAC > SRR4302532.5091997/1‑94 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAAC < SRR4302532.3391171/94‑1 (MQ=60)
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAAC < SRR4302532.825408/94‑1 (MQ=60)
AAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑CCACGCCGCATCTGGCAACGAACG < SRR4302532.1379930/94‑1 (MQ=60)
AAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGC > SRR4302532.5915896/1‑94 (MQ=60)
AAAACCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCC < SRR4302532.3696114/94‑1 (MQ=60)
AAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCC > SRR4302532.4765737/1‑94 (MQ=60)
AAAACGTTAAACGCCCTTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCT < SRR4302532.3320023/94‑1 (MQ=60)
AAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCT < SRR4302532.4913085/94‑1 (MQ=60)
AAACGTTAACCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTT < SRR4302532.1911877/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTT < SRR4302532.4751409/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTT < SRR4302532.4901264/94‑1 (MQ=60)
AAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTT < SRR4302532.1156710/94‑1 (MQ=60)
ACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGC > SRR4302532.2453986/1‑94 (MQ=60)
CGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCC > SRR4302532.2683293/1‑94 (MQ=60)
CGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCC > SRR4302532.5371115/1‑94 (MQ=60)
GTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCT > SRR4302532.5967376/1‑94 (MQ=60)
GTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCT < SRR4302532.2731584/94‑1 (MQ=60)
GTAAAACGCCCTTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCT < SRR4302532.1495179/94‑1 (MQ=60)
TTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302532.5420801/94‑1 (MQ=60)
TAAAACGCCCGTACGGGCCTAGGGTTCGAATTTGCAGGAAATCGTAGGGAAGATAAGGCTT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTG < SRR4302532.5622659/94‑1 (MQ=60)
aattCGCCCGTACTGGCCTACGGTTCGTATTTGCACGATATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTGGCCCGA > SRR4302532.5684117/5‑94 (MQ=60)
TAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGA < SRR4302532.3791767/94‑1 (MQ=60)
TAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGA < SRR4302532.3791768/94‑1 (MQ=60)
TAAACGCCCGTACTGGCCTACGGTTCGAAATTGCACGAAATCGTAGGGCAGATAAGGCGG‑‑GCACGCCGCATCTGGCCACGAACGCCTTGTCTGA > SRR4302532.5827991/1‑94 (MQ=60)
AAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGAC > SRR4302532.3253394/1‑94 (MQ=60)
AACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTCGCCTGACA > SRR4302532.4993207/1‑94 (MQ=60)
ACGCCCGTACTGGCTTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAT < SRR4302532.3890305/94‑1 (MQ=60)
ACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAT < SRR4302532.2648725/94‑1 (MQ=60)
CCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTCACATAA < SRR4302532.2162053/94‑1 (MQ=60)
CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAA > SRR4302532.2431438/1‑94 (MQ=60)
CCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAA < SRR4302532.4373713/94‑1 (MQ=60)
CCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAA > SRR4302532.5428439/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT > SRR4302532.3061686/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT > SRR4302532.1640589/1‑94 (MQ=60)
GTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGT < SRR4302532.1681239/94‑1 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGGAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATACAAGTG > SRR4302532.1619394/1‑94 (MQ=60)
TACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTG > SRR4302532.3291593/1‑94 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC > SRR4302532.5308773/1‑94 (MQ=60)
ACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGC > SRR4302532.4561906/1‑94 (MQ=60)
CTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCC < SRR4302532.699337/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACTAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302532.4642066/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302532.2815550/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG < SRR4302532.1820243/94‑1 (MQ=60)
TGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCG > SRR4302532.5899452/1‑94 (MQ=60)
GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGG > SRR4302532.6055209/1‑94 (MQ=60)
GGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGG < SRR4302532.175464/94‑1 (MQ=60)
GCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGA < SRR4302532.1950059/94‑1 (MQ=60)
CCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAG > SRR4302532.78944/1‑94 (MQ=60)
CTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGA > SRR4302532.3096324/1‑94 (MQ=60)
TACGGTTCGAATTTGCACGAAGTCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAA < SRR4302532.4149709/94‑1 (MQ=60)
CGGTTCGAATTTGCACGAATTCGTAGGGTATATAAGGCGT‑‑TCACGCCACATCTGGAAACGAACGCCTTGCCTGTCATAAAAGTGCCGGAGAATA < SRR4302532.5232725/94‑1 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA > SRR4302532.967159/1‑94 (MQ=60)
CGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATA < SRR4302532.2008313/94‑1 (MQ=60)
GGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAT > SRR4302532.5971441/1‑94 (MQ=60)
gttcaagtcTGCACGAAATCTTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTCCCTGACATAAAAGTTCCGGAGAATATC < SRR4302532.5224738/85‑1 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC > SRR4302532.1192265/1‑94 (MQ=60)
GTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATC < SRR4302532.277341/94‑1 (MQ=60)
TTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCT < SRR4302532.4023980/94‑1 (MQ=60)
TCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTC > SRR4302532.4561504/1‑94 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCcggggagatattc > SRR4302532.1253632/1‑81 (MQ=60)
CGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCC < SRR4302532.3147035/94‑1 (MQ=60)
TTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAT > SRR4302532.1168219/1‑94 (MQ=60)
TTGCACGAAACCGTGGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAT < SRR4302532.2531867/94‑1 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT < SRR4302532.2491774/94‑1 (MQ=60)
TGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT > SRR4302532.2798342/1‑94 (MQ=60)
tgcaggaaagggtagggcagatagggcctccacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATT < SRR4302532.1273853/60‑1 (MQ=60)
cagaaaagcggAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT < SRR4302532.1713312/83‑1 (MQ=60)
CACGAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTT < SRR4302532.5135530/94‑1 (MQ=60)
ccgaaattctgagggaagatagggcttccacgCCGCATCGGGCAACGACCGCCTTCCCTGACATAAAAGTGCCGG‑GAATATCTCCGGCATTTTT < SRR4302532.2562466/62‑1 (MQ=49)
GAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT < SRR4302532.2892545/94‑1 (MQ=60)
GAAATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTAT < SRR4302532.2285872/94‑1 (MQ=60)
AAATCGTAGGACAGATAAGGCGTCGACG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATT < SRR4302532.4648246/94‑1 (MQ=60)
ATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302532.626591/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302532.4108963/1‑94 (MQ=60)
ATCGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCC > SRR4302532.3185959/1‑94 (MQ=60)
accggtaggacattgaagatgttcacgCCGCATCTGGCAACGAACGCGTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTC < SRR4302532.3704765/67‑1 (MQ=60)
CGTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTtttctcc > SRR4302532.1238025/1‑87 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302532.232105/94‑1 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302532.4993146/94‑1 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302532.2384307/94‑1 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA > SRR4302532.427825/1‑94 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302532.2556602/94‑1 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302532.2556603/94‑1 (MQ=60)
GTAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACA < SRR4302532.1176633/94‑1 (MQ=60)
TAGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAG < SRR4302532.3567289/94‑1 (MQ=60)
AGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGC > SRR4302532.2427272/1‑94 (MQ=60)
AGGGCAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGC > SRR4302532.5076759/1‑94 (MQ=60)
GAAGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAA < SRR4302532.3704396/94‑1 (MQ=60)
AGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTTCACAGCCAAAC > SRR4302532.4784924/1‑94 (MQ=60)
AGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC < SRR4302532.5873784/94‑1 (MQ=60)
AGATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAC > SRR4302532.6117659/1‑94 (MQ=60)
aaaaaaagccctccacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAA < SRR4302532.4803751/77‑1 (MQ=60)
GATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT > SRR4302532.4810829/1‑94 (MQ=60)
CATAAGGCGT‑‑TCACGCCGCGTCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATTTCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302532.1923618/94‑1 (MQ=60)
ATAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTC > SRR4302532.3834063/1‑94 (MQ=60)
aataaggcgtccacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACT < SRR4302532.4816992/79‑1 (MQ=60)
TAAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCA > SRR4302532.4821925/1‑94 (MQ=60)
AAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT < SRR4302532.2117087/94‑1 (MQ=60)
AAGGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCAT < SRR4302532.4542890/94‑1 (MQ=60)
AGGCGG‑‑TCACGCCGCATCTGGCAACGAACGCCTTGTCTGACATAAAAGTGCCGGAAAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATA < SRR4302532.5206257/94‑1 (MQ=60)
GGCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAA > SRR4302532.5092516/1‑94 (MQ=60)
GCGT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAAT < SRR4302532.6153824/94‑1 (MQ=60)
GT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCACACTCATAATAT > SRR4302532.543983/1‑94 (MQ=60)
GT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302532.699500/1‑94 (MQ=60)
GT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302532.5172619/1‑94 (MQ=60)
GT‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATAT > SRR4302532.439962/1‑94 (MQ=60)
T‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302532.5135790/94‑1 (MQ=60)
T‑‑TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302532.369274/94‑1 (MQ=60)
tccacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302532.3159099/88‑1 (MQ=60)
tacacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATA < SRR4302532.5799766/88‑1 (MQ=60)
tcacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAT < SRR4302532.371673/89‑1 (MQ=60)
cacgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATT < SRR4302532.3972573/90‑1 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302532.5977733/94‑1 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC < SRR4302532.1050213/94‑1 (MQ=60)
CG‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCAGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCC > SRR4302532.5870398/1‑94 (MQ=60)
acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGGATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC < SRR4302532.531810/91‑1 (MQ=60)
acgCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTC < SRR4302532.531811/91‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302532.6237893/94‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302532.290503/94‑1 (MQ=60)
G‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCG < SRR4302532.4951737/94‑1 (MQ=60)
CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > SRR4302532.5158718/1‑94 (MQ=60)
CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > SRR4302532.1007361/1‑94 (MQ=60)
|
GCGCTGGCGGCGGCAATGGGCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGT‑‑TCA‑‑CCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGG > NC_000913/3537312‑3537498
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
