Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,573,700	+C	intergenic (+403/+997)	yhgN → / ← gntK	hypothetical protein/gluconokinase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,573,700	1	.	C	100.0%	678.3 / NA	190	intergenic (+403/+997)	yhgN/gntK	hypothetical protein/gluconokinase 2
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (95/95); total (95/95)

Only 100 of 207 total aligned reads displayed.

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG  >  NC_000913/3573608‑3573786

aaCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACg                                                                                         >  2:5358852/1‑93 (MQ=255)

 aCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgc                                                                                        <  2:3963732/93‑2 (MQ=255)

 aCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgc                                                                                        >  1:3194371/1‑92 (MQ=255)

 aCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgc                                                                                        <  1:19019/93‑2 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     >  1:3970865/1‑89 (MQ=255)

       tACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGcc                                                                                  >  2:5562886/1‑93 (MQ=255)

       tACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGCTAACGCTTCGcc                                                                                  >  1:2316885/1‑93 (MQ=255)

        aCGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGccc                                                                                 >  1:3712155/1‑93 (MQ=255)

         cGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCa                                                                                <  1:2982018/93‑1 (MQ=255)

         cGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCa                                                                                <  1:5239306/93‑1 (MQ=255)

         cGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCa                                                                                >  2:5789897/1‑93 (MQ=255)

          ggTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAg                                                                               <  2:2499802/93‑1 (MQ=255)

           gTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGt                                                                              <  1:2332292/93‑1 (MQ=255)

             ggCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGc                                                                            <  1:621427/93‑1 (MQ=255)

             ggCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGc                                                                            <  2:2809611/93‑1 (MQ=255)

              gCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGcc                                                                           <  2:4542155/93‑1 (MQ=255)

               cAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCg                                                                          <  2:2572393/93‑1 (MQ=255)

                 gAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGa                                                                        <  1:2559752/93‑1 (MQ=255)

                   aCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCCTCGCCCAGTGCCGGAcc                                                                      >  2:5499124/1‑93 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    <  2:376217/93‑1 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    >  2:2322320/1‑93 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   >  2:2036868/1‑93 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   >  1:5182669/1‑93 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   >  1:1592170/1‑93 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   >  2:3517301/1‑93 (MQ=255)

                          atgatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCa                                                               >  1:1632957/1‑93 (MQ=255)

                           tgatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCag                                                              <  2:1491956/93‑1 (MQ=255)

                            gatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCaga                                                             <  2:2076492/93‑1 (MQ=255)

                            gatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCaga                                                             >  1:1833023/1‑93 (MQ=255)

                            gatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCaga                                                             >  2:1009615/1‑93 (MQ=255)

                             atgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCagag                                                            <  2:4631339/93‑1 (MQ=255)

                             atgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCagag                                                            >  1:477709/1‑93 (MQ=255)

                              tgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGt                                                           >  1:2378328/1‑93 (MQ=255)

                                cgcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCa                                                         <  2:4410619/93‑1 (MQ=255)

                                   aCTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAAcc                                                      <  1:5015310/93‑1 (MQ=255)

                                     tGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAg                                                    >  2:336522/1‑93 (MQ=255)

                                         gCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAcc                                                >  1:1452704/1‑93 (MQ=255)

                                         gCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAcc                                                >  2:1285757/1‑93 (MQ=255)

                                         gCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAcc                                                >  2:4898756/1‑93 (MQ=255)

                                         gCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAcc                                                <  1:2831816/93‑1 (MQ=255)

                                           tGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTg                                              <  2:3998774/93‑1 (MQ=255)

                                           tGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTg                                              >  1:2530875/1‑93 (MQ=255)

                                            gCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGt                                             >  1:4651413/1‑93 (MQ=255)

                                             ccAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGtt                                            <  2:2840854/93‑1 (MQ=255)

                                             ccAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGtt                                            >  2:836294/1‑93 (MQ=255)

                                              cAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGttt                                           <  2:4801545/93‑1 (MQ=255)

                                               aGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTg                                          <  1:3692138/93‑1 (MQ=255)

                                               aGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTg                                          >  2:4961522/1‑93 (MQ=255)

                                               aGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTg                                          <  1:2150622/93‑1 (MQ=255)

                                                gCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGGTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGa                                         >  1:328649/1‑93 (MQ=255)

                                                 cACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGaa                                        <  1:4426604/93‑1 (MQ=255)

                                                 cACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGaa                                        <  2:594187/93‑1 (MQ=255)

                                                   cGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAaca                                      >  2:2358881/1‑93 (MQ=255)

                                                    gAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAacac                                     <  2:4198314/93‑1 (MQ=255)

                                                    gAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAacac                                     >  2:1157698/1‑93 (MQ=255)

                                                    gAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAAACAGCACCTGTTTGAacac                                     >  1:3772590/1‑93 (MQ=255)

                                                     aaGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcg                                    >  2:3835263/1‑93 (MQ=255)

                                                      aGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgc                                   <  2:582957/93‑1 (MQ=255)

                                                      aGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgc                                   <  1:1166904/93‑1 (MQ=255)

                                                      aGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgc                                   <  1:3668407/93‑1 (MQ=255)

                                                         aGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgccgc                                <  1:474277/93‑1 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               <  2:5299938/93‑1 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               >  1:5086579/1‑93 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               <  2:4074442/93‑1 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               <  1:5745838/93‑1 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               <  2:3898080/93‑1 (MQ=255)

                                                           gTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCTAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGccgccc                              <  2:4993374/93‑1 (MQ=255)

                                                           gTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGccgccc                              <  2:1629556/93‑1 (MQ=255)

                                                            tGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGccgcccg                             <  2:3132989/93‑1 (MQ=255)

                                                             gATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCTGAGTCAACCAGCACCTGTTTGAACACGccgcccgc                            >  1:2892176/1‑93 (MQ=255)

                                                             gATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGccgcccgc                            >  1:1095446/1‑93 (MQ=255)

                                                              aTAGAAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCa                           <  1:549102/93‑1 (MQ=255)

                                                                aGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAcc                         >  1:4235205/1‑93 (MQ=255)

                                                                  cAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCaa                       <  2:5712145/93‑1 (MQ=255)

                                                                  cAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCaa                       <  2:1150295/93‑1 (MQ=255)

                                                                  cAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCaa                       <  2:243880/93‑1 (MQ=255)

                                                                   aaTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAt                      <  1:704034/93‑1 (MQ=255)

                                                                     tCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCa                    >  1:5582490/1‑93 (MQ=255)

                                                                        gCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACca                 >  1:3454472/1‑93 (MQ=255)

                                                                         cAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcag                <  1:830125/93‑1 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              <  2:546975/93‑1 (MQ=255)

                                                                            gCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagcag             >  2:2930148/1‑93 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCGAGTGCCGGACCTACACCAGAGGCAAGCAGCACCCGGTAGAATACGCCGCCCCCACCAATCACCACCAGaa           >  2:1221937/1‑93 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCCATCACCAGCAGaa           >  1:798081/1‑93 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagcagca           >  1:2120632/1‑91 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGaa           <  2:1178104/93‑1 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGaa           >  2:19699/1‑93 (MQ=255)

                                                                               cATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAt          <  2:1099560/93‑1 (MQ=255)

                                                                                aTGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATg         <  2:1883196/93‑1 (MQ=255)

                                                                                aTGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATg         >  1:2801014/1‑93 (MQ=255)

                                                                                aTGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATg         >  1:1594145/1‑93 (MQ=255)

                                                                                aTGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATg         <  2:6115443/93‑1 (MQ=255)

                                                                                    cGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcc     <  2:4055744/93‑1 (MQ=255)

                                                                                    cGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcc     >  1:6001599/1‑93 (MQ=255)

                                                                                     ggTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATccc    <  1:1326935/93‑1 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   >  1:3588603/1‑93 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   <  1:772797/93‑1 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   >  1:4880898/1‑93 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   >  2:647746/1‑93 (MQ=255)

                                                                                       ttAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCccg  <  2:3543068/93‑1 (MQ=255)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG  >  NC_000913/3573608‑3573786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AAACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTTG  >  NC_000913/3573607‑3573793

AAACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG                                                                                                 <  SRR4302532.1894615/94‑1 (MQ=60)

AAACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG                                                                                                 <  SRR4302532.1535404/94‑1 (MQ=60)

 AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑C                                                                                               >  SRR4302532.3300441/1‑94 (MQ=60)

 AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑C                                                                                               >  SRR4302532.5044330/1‑94 (MQ=60)

  ACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑CT                                                                                              <  SRR4302532.19790/94‑1 (MQ=60)

  ACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑CT                                                                                              >  SRR4302532.4761578/1‑94 (MQ=60)

    AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCTATGCCGGTTAACGCTT‑C                                                                                            <  SRR4302532.181273/94‑1 (MQ=60)

    AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑C                                                                                            >  SRR4302532.4104630/1‑94 (MQ=60)

       CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGCTAACGCTT‑CGCC                                                                                         >  SRR4302532.2394004/1‑94 (MQ=60)

        TACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCC                                                                                        >  SRR4302532.3836756/1‑94 (MQ=60)

          CGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAG                                                                                      <  SRR4302532.5419946/94‑1 (MQ=60)

          CGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAG                                                                                      <  SRR4302532.3080636/94‑1 (MQ=60)

            GTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTG                                                                                    <  SRR4302532.2409977/94‑1 (MQ=60)

              GGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCC                                                                                  <  SRR4302532.643110/94‑1 (MQ=60)

                CAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGG                                                                                >  SRR4302532.330632/1‑94 (MQ=60)

                 AGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGA                                                                               <  SRR4302532.4846548/94‑1 (MQ=60)

                 AGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGA                                                                               >  SRR4302532.838521/1‑94 (MQ=60)

                  GAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGAC                                                                              <  SRR4302532.2645144/94‑1 (MQ=60)

                      CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTAC                                                                          >  SRR4302532.1646067/1‑94 (MQ=60)

                      CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTAC                                                                          >  SRR4302532.5361193/1‑94 (MQ=60)

                      CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTAC                                                                          <  SRR4302532.2094784/94‑1 (MQ=60)

                        TGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGC                                                                        >  SRR4302532.145964/1‑94 (MQ=60)

                        TGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGCTAACGCTT‑CGCCCAGTGCCGGACCTACGC                                                                        >  SRR4302532.4098075/1‑94 (MQ=60)

                         GAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCC                                                                       >  SRR4302532.4905741/1‑94 (MQ=60)

                          AATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCA                                                                      >  SRR4302532.1688230/1‑94 (MQ=60)

                            TGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGA                                                                    >  SRR4302532.1893986/1‑94 (MQ=60)

                             GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAG                                                                   >  SRR4302532.494368/1‑94 (MQ=60)

                             GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAG                                                                   <  SRR4302532.2400822/94‑1 (MQ=60)

                              ATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGT                                                                  >  SRR4302532.2457583/1‑94 (MQ=60)

                               TGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTC                                                                 <  SRR4302532.3055782/94‑1 (MQ=60)

                                GCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCA                                                                <  SRR4302532.6139363/94‑1 (MQ=60)

                                GCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCA                                                                <  SRR4302532.1526143/94‑1 (MQ=60)

                                   CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                             >  SRR4302532.1647140/1‑94 (MQ=60)

                                   CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                             <  SRR4302532.287593/94‑1 (MQ=60)

                                    ACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCA                                                            <  SRR4302532.3208807/94‑1 (MQ=60)

                                    ACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCA                                                            <  SRR4302532.5187245/94‑1 (MQ=60)

                                    ACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCA                                                            <  SRR4302532.5187244/94‑1 (MQ=60)

                                      TGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGC                                                          >  SRR4302532.5785000/1‑94 (MQ=60)

                                      TGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGC                                                          >  SRR4302532.3828869/1‑94 (MQ=60)

                                      TGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGC                                                          <  SRR4302532.1683784/94‑1 (MQ=60)

                                         AGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGGGGCAACCAGCACC                                                       <  SRR4302532.3792424/94‑1 (MQ=60)

                                         AGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACC                                                       >  SRR4302532.1501675/1‑94 (MQ=60)

                                          GCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCT                                                      <  SRR4302532.2926510/94‑1 (MQ=60)

                                           CTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTG                                                     >  SRR4302532.2615319/1‑94 (MQ=60)

                                            TGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGT                                                    >  SRR4302532.4810000/1‑94 (MQ=60)

                                              CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                                  >  SRR4302532.792266/1‑94 (MQ=60)

                                               CAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                                 <  SRR4302532.5371175/94‑1 (MQ=60)

                                               CAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                                 >  SRR4302532.1931768/1‑94 (MQ=60)

                                                AGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGA                                                <  SRR4302532.3816093/94‑1 (MQ=60)

                                                AGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGA                                                <  SRR4302532.2222490/94‑1 (MQ=60)

                                                AGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGGTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGA                                                >  SRR4302532.340048/1‑94 (MQ=60)

                                                 GCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAA                                               >  SRR4302532.813510/1‑94 (MQ=60)

                                                  CACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAAC                                              <  SRR4302532.4577396/94‑1 (MQ=60)

                                                  CACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAAC                                              <  SRR4302532.4577397/94‑1 (MQ=60)

                                                    CGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAC                                            <  SRR4302532.5267004/94‑1 (MQ=60)

                                                    CGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAAACAGCACCTGTTTGAACAC                                            >  SRR4302532.3899605/1‑94 (MQ=60)

                                                      AAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGC                                          >  SRR4302532.560172/1‑94 (MQ=60)

                                                       AGCGGGTGATAGCAATCGGCAGGTGCATGCCGTTTAACGCTT‑CGCCCAGTCCCGGACCTACGCCAGAGTCAGCCAGCACCTGTTTGAACACGCC                                         <  SRR4302532.1205874/94‑1 (MQ=60)

                                                       AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                         <  SRR4302532.3791634/94‑1 (MQ=60)

                                                       AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                         <  SRR4302532.1205875/94‑1 (MQ=60)

                                                       AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCCGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                         >  SRR4302532.3800446/1‑94 (MQ=60)

                                                        GCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCG                                        <  SRR4302532.2427206/94‑1 (MQ=60)

                                                          AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCCACCAGCACCTGTTTGGACACGCCGCC                                      >  SRR4302532.3877435/1‑94 (MQ=60)

                                                          AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCC                                      >  SRR4302532.5261469/1‑94 (MQ=60)

                                                          AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCC                                      <  SRR4302532.490804/94‑1 (MQ=60)

                                                           GGTGATAGCAATCGGCGGGCCCATGCCGGGTAACGCTT‑CGCCCAGGGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGACC                                     >  SRR4302532.5692015/1‑94 (MQ=60)

                                                           GGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCC                                     <  SRR4302532.5945852/94‑1 (MQ=60)

                                                           GGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCC                                     >  SRR4302532.1030987/1‑94 (MQ=60)

                                                             TTATAGCAATCGGCAGTCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGTACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGC                                   <  SRR4302532.4495067/94‑1 (MQ=60)

                                                             TGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCTGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGC                                   >  SRR4302532.2988783/1‑94 (MQ=60)

                                                             TGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGC                                   >  SRR4302532.1132077/1‑94 (MQ=60)

                                                               ATAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAC                                 <  SRR4302532.568257/94‑1 (MQ=60)

                                                               ATAGAAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAC                                 <  SRR4302532.568256/94‑1 (MQ=60)

                                                                TAGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACC                                >  SRR4302532.4377427/1‑94 (MQ=60)

                                                                 AGCAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCA                               >  SRR4302532.3644046/1‑94 (MQ=60)

                                                                   GAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAT                             <  SRR4302532.4322596/94‑1 (MQ=60)

                                                                   CAATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAT                             >  SRR4302532.3455933/1‑94 (MQ=60)

                                                                    AATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATC                            <  SRR4302532.728098/94‑1 (MQ=60)

                                                                     ATCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCA                           >  SRR4302532.5776285/1‑94 (MQ=60)

                                                                      tcgtcacacccatgcgtGTTAACG‑TTGCGCCCAGTGCCGGACCTACGCCAGAATCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAC                          <  SRR4302532.3918513/77‑1 (MQ=60)

                                                                      TCGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAC                          >  SRR4302532.2594295/1‑94 (MQ=60)

                                                                       CGGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACC                         >  SRR4302532.2213155/1‑94 (MQ=60)

                                                                        GGCAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCA                        >  SRR4302532.3570168/1‑94 (MQ=60)

                                                                          CAGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGC                      <  SRR4302532.858550/94‑1 (MQ=60)

                                                                           AGGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCA                     <  SRR4302532.1276947/94‑1 (MQ=60)

                                                                            GGCCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAG                    >  SRR4302532.5083342/1‑94 (MQ=60)

                                                                              CCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCCATCACCAGCAGAA                  >  SRR4302532.825366/1‑94 (MQ=60)

                                                                              CCCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGCA                  >  SRR4302532.2191479/1‑94 (MQ=60)

                                                                               CCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT                 >  SRR4302532.2349821/1‑94 (MQ=60)

                                                                               CCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT                 <  SRR4302532.6209153/94‑1 (MQ=60)

                                                                               CCATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGACGCCCGCACCAATCATCAGCAGAAT                 >  SRR4302532.628515/1‑94 (MQ=60)

                                                                                CATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG                >  SRR4302532.1648109/1‑94 (MQ=60)

                                                                                CATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG                >  SRR4302532.708237/1‑94 (MQ=60)

                                                                                CATGCCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG                >  SRR4302532.2894869/1‑94 (MQ=60)

                                                                                    CCGGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCC            >  SRR4302532.6208872/1‑94 (MQ=60)

                                                                                      GGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCTCCAGCAGAATGATCCCC          <  SRR4302532.4309165/94‑1 (MQ=60)

                                                                                      GGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          >  SRR4302532.3708639/1‑94 (MQ=60)

                                                                                      GGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          >  SRR4302532.5048731/1‑94 (MQ=60)

                                                                                      GGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          >  SRR4302532.2896679/1‑94 (MQ=60)

                                                                                      GGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          <  SRR4302532.1371272/94‑1 (MQ=60)

                                                                                      GGTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC          <  SRR4302532.1156407/94‑1 (MQ=60)

                                                                                       GTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG         >  SRR4302532.2979372/1‑94 (MQ=60)

                                                                                       GTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG         <  SRR4302532.2617346/94‑1 (MQ=60)

                                                                                       GTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG         <  SRR4302532.2617345/94‑1 (MQ=60)

                                                                                       GTTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG         <  SRR4302532.799455/94‑1 (MQ=60)

                                                                                        TTAACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGACTGATCCCCGC        >  SRR4302532.4343287/1‑94 (MQ=60)

                                                                                          AACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG      >  SRR4302532.1073263/1‑94 (MQ=60)

                                                                                          AACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG      >  SRR4302532.2203874/1‑94 (MQ=60)

                                                                                          AACGCTT‑CGCCCAGTCCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGACCCCGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG      <  SRR4302532.3723674/94‑1 (MQ=60)

                                                                                           ACGCTT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGG     >  SRR4302532.5591555/1‑94 (MQ=60)

                                                                                            CG‑TC‑CGCCCAGTGCCGAACCTAGGCCAGAGGCAACCAGCGGCTGTTTGAACCCGCCGCCCGCACCAATCACCAGCAGAATGATCCCCACCGGTT   <  SRR4302532.5106375/94‑1 (MQ=60)

                                                                                             C‑TT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTTG  <  SRR4302532.984810/94‑1 (MQ=60)

AAACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TT‑CGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGGTTG  >  NC_000913/3573607‑3573793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`