Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,573,700	+C	intergenic (+403/+997)	yhgN → / ← gntK	hypothetical protein/gluconokinase 2

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,573,700	1	.	C	100.0%	966.3 / NA	263	intergenic (+403/+997)	yhgN/gntK	hypothetical protein/gluconokinase 2
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (134/129); total (134/129)

Only 100 of 288 total aligned reads displayed.

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG  >  NC_000913/3573608‑3573786

 aCAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgc                                                                                        >  1:2800703/1‑92 (MQ=255)

  cAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgct                                                                                       <  2:5899198/93‑3 (MQ=255)

   aGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgctt                                                                                      <  1:102955/93‑4 (MQ=255)

   aGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgctt                                                                                      <  2:5336581/93‑4 (MQ=255)

   aGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgctt                                                                                      <  1:2578377/93‑4 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     <  1:6366874/93‑5 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     <  1:5581317/93‑5 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     <  1:6129950/93‑5 (MQ=255)

    ggCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACgcttc                                                                                     <  1:245877/93‑5 (MQ=255)

      cTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGc                                                                                   <  1:2346232/93‑1 (MQ=255)

        aCGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGccc                                                                                 >  2:1399936/1‑93 (MQ=255)

         cGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCa                                                                                <  1:3052218/93‑1 (MQ=255)

           gTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGCTAACGCTTCGCCCAGt                                                                              >  1:925541/1‑93 (MQ=255)

            tGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTg                                                                             <  2:5425499/93‑1 (MQ=255)

            tGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTg                                                                             >  1:545181/1‑93 (MQ=255)

             ggCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGc                                                                            >  2:1664752/1‑93 (MQ=255)

             ggCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGGTAACGCTTCGCCCAGTGc                                                                            >  2:5929505/1‑93 (MQ=255)

              gCAGAGCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGcc                                                                           <  2:946054/93‑1 (MQ=255)

              gCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGcc                                                                           <  1:5535969/93‑1 (MQ=255)

               cAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCg                                                                          <  1:4334444/93‑1 (MQ=255)

                aGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCgg                                                                         >  2:3427905/1‑93 (MQ=255)

                 gAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGa                                                                        <  2:1470730/93‑1 (MQ=255)

                  aaCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAc                                                                       >  1:2931595/1‑93 (MQ=255)

                  aaCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAc                                                                       <  1:3180690/93‑1 (MQ=255)

                   aCCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGAcc                                                                      <  1:6629048/93‑1 (MQ=255)

                    cccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCt                                                                     >  2:3266857/1‑93 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGTCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    <  2:213993/93‑1 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    <  2:175797/93‑1 (MQ=255)

                     ccTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTa                                                                    >  2:4840397/1‑93 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   <  2:3718127/93‑1 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   <  2:4727781/93‑1 (MQ=255)

                      cTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTAc                                                                   <  2:6634106/93‑1 (MQ=255)

                       tGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACg                                                                  >  1:4010488/1‑93 (MQ=255)

                       tGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACg                                                                  >  1:4824530/1‑93 (MQ=255)

                         aaTGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGcc                                                                <  2:1154168/93‑1 (MQ=255)

                           tgatgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCag                                                              >  2:5646263/1‑93 (MQ=255)

                             atgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCagag                                                            >  1:4545419/1‑93 (MQ=255)

                             atgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCagag                                                            <  2:6191580/93‑1 (MQ=255)

                             atgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCagag                                                            >  1:5293814/1‑93 (MQ=255)

                              tgCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGt                                                           >  2:1871650/1‑93 (MQ=255)

                               gcgcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTc                                                          <  1:3575486/93‑1 (MQ=255)

                               gcgcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTc                                                          <  1:376833/93‑1 (MQ=255)

                                 gcACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCaa                                                        <  1:1691022/93‑1 (MQ=255)

                                  cACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAAc                                                       >  2:3536191/1‑93 (MQ=255)

                                   aCTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAAcc                                                      <  2:3340855/93‑1 (MQ=255)

                                   aCTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAAcc                                                      >  1:4214338/1‑93 (MQ=255)

                                    cTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCa                                                     <  1:1353568/93‑1 (MQ=255)

                                      gCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGc                                                   <  1:5091927/93‑1 (MQ=255)

                                      gCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGc                                                   <  1:4460219/93‑1 (MQ=255)

                                       cAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCa                                                  >  2:4304220/1‑93 (MQ=255)

                                       cAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCa                                                  <  2:475720/93‑1 (MQ=255)

                                       cAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCa                                                  <  2:1204720/93‑1 (MQ=255)

                                         gCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAcc                                                <  1:3699135/93‑1 (MQ=255)

                                         gCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCAcc                                                <  2:4657325/93‑1 (MQ=255)

                                           tGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTg                                              >  1:4884046/1‑93 (MQ=255)

                                            gCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCCGt                                             >  2:2735637/1‑93 (MQ=255)

                                              cAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGttt                                           <  1:6049326/93‑1 (MQ=255)

                                                 cACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCTAGAGTCAACCAGCACCTGTTTGaa                                        <  1:2147835/93‑1 (MQ=255)

                                                 cACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGaa                                        >  1:4723984/1‑93 (MQ=255)

                                                  aCGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAac                                       >  2:2439096/1‑93 (MQ=255)

                                                    gAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAacac                                     >  2:3030832/1‑93 (MQ=255)

                                                    gAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAacac                                     <  1:1521378/93‑1 (MQ=255)

                                                     aaGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcg                                    <  2:5273741/93‑1 (MQ=255)

                                                      aGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgc                                   >  2:1005322/1‑93 (MQ=255)

                                                      aGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgc                                   >  2:1575383/1‑93 (MQ=255)

                                                       gCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgcc                                  >  2:5199175/1‑93 (MQ=255)

                                                       gCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGGCAACCAGCACCTGTTTGAACAcgcc                                  >  2:361664/1‑93 (MQ=255)

                                                         aGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACAcgccgc                                >  2:4780375/1‑93 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               <  1:5263996/93‑1 (MQ=255)

                                                          ggTGATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACgccgcc                               <  2:548370/93‑1 (MQ=255)

                                                             gATAGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGccgcccgc                            <  2:4064724/93‑1 (MQ=255)

                                                                aGCAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCAcc                         >  1:656091/1‑93 (MQ=255)

                                                                  cAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCaa                       >  2:2465346/1‑93 (MQ=255)

                                                                  cAATCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCaa                       >  2:3733799/1‑93 (MQ=255)

                                                                   aaTCGGCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAt                      <  2:2493142/93‑1 (MQ=255)

                                                                       ggCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAcc                  <  2:4212622/93‑1 (MQ=255)

                                                                       ggCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAcc                  <  2:5315087/93‑1 (MQ=255)

                                                                        gCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACca                 >  2:5839604/1‑93 (MQ=255)

                                                                        gCAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACca                 >  2:6019436/1‑93 (MQ=255)

                                                                         cAGTCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcag                <  1:4672371/93‑1 (MQ=255)

                                                                         cAGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcag                >  2:4437858/1‑93 (MQ=255)

                                                                          aGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagc               >  1:574993/1‑93 (MQ=255)

                                                                          aGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagc               >  2:387297/1‑93 (MQ=255)

                                                                          aGGCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagc               >  2:2915822/1‑93 (MQ=255)

                                                                           ggCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagca              <  2:2559190/93‑1 (MQ=255)

                                                                            gCCCATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACcagcag             <  2:6097739/93‑1 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGaa           <  2:1720248/93‑1 (MQ=255)

                                                                              ccATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGaa           >  2:6480877/1‑93 (MQ=255)

                                                                               cATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAt          <  1:2080369/93‑1 (MQ=255)

                                                                               cATGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAt          <  1:2309585/93‑1 (MQ=255)

                                                                                aTGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATg         >  2:436361/1‑93 (MQ=255)

                                                                                 tGCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGa        <  2:760934/93‑1 (MQ=255)

                                                                                  gCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAt       <  1:1213007/93‑1 (MQ=255)

                                                                                  gCCGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAt       <  2:2245647/93‑1 (MQ=255)

                                                                                    cGGTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcc     >  1:3303246/1‑93 (MQ=255)

                                                                                     ggTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATccc    <  1:77603/93‑1 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   >  1:185814/1‑93 (MQ=255)

                                                                                      gTTAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATcccc   >  2:22137/1‑93 (MQ=255)

                                                                                       ttAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCccg  >  1:1964418/1‑93 (MQ=255)

                                                                                       ttAACGCTTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCccg  <  2:4006706/93‑1 (MQ=255)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG  >  NC_000913/3573608‑3573786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGG  >  NC_000913/3573608‑3573790

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑C                                                                                           >  SRR4302547.6169594/1‑94 (MQ=60)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑C                                                                                           >  SRR4302547.563798/1‑94 (MQ=60)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑C                                                                                           >  SRR4302547.2856780/1‑94 (MQ=60)

 ACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑CT                                                                                          <  SRR4302547.1907803/94‑1 (MQ=60)

 ACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑CT                                                                                          <  SRR4302547.1459112/94‑1 (MQ=60)

  CAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGctt                                                                                           <  SRR4302547.6735323/94‑4 (MQ=60)

   AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTC                                                                                         <  SRR4302547.104838/94‑1 (MQ=60)

   AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTC                                                                                         <  SRR4302547.2630405/94‑1 (MQ=60)

   AGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTC                                                                                         <  SRR4302547.4778089/94‑1 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCG                                                                                        <  SRR4302547.6499701/94‑1 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCG                                                                                        <  SRR4302547.6257105/94‑1 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCG                                                                                        <  SRR4302547.250471/94‑1 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCG                                                                                        >  SRR4302547.5363376/1‑94 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCG                                                                                        >  SRR4302547.3967719/1‑94 (MQ=60)

    GGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCG                                                                                        <  SRR4302547.5696442/94‑1 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCC                                                                                      >  SRR4302547.5549901/1‑94 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCC                                                                                      <  SRR4302547.2017346/94‑1 (MQ=60)

      CTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCC                                                                                      <  SRR4302547.2393788/94‑1 (MQ=60)

       TACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCC                                                                                     <  SRR4302547.5790024/94‑1 (MQ=60)

        ACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCA                                                                                    <  SRR4302547.3145443/94‑1 (MQ=60)

        ACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCA                                                                                    <  SRR4302547.1373219/94‑1 (MQ=60)

         CGGTGTCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAG                                                                                   <  SRR4302547.1611772/94‑1 (MQ=60)

         CGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCTGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAG                                                                                   <  SRR4302547.3874904/94‑1 (MQ=60)

         CGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAG                                                                                   <  SRR4302547.3112975/94‑1 (MQ=60)

          GGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGT                                                                                  <  SRR4302547.2912420/94‑1 (MQ=60)

          GGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGT                                                                                  >  SRR4302547.2589650/1‑94 (MQ=60)

          GGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGCTAACGC‑TTCGCCCAGT                                                                                  >  SRR4302547.943418/1‑94 (MQ=60)

           GTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTG                                                                                 >  SRR4302547.555020/1‑94 (MQ=60)

            TGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGC                                                                                >  SRR4302547.2879861/1‑94 (MQ=60)

             GGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCC                                                                               <  SRR4302547.3174933/94‑1 (MQ=60)

              GCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCA                                                                              <  SRR4302547.5650216/94‑1 (MQ=60)

               CAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGG                                                                             <  SRR4302547.4423611/94‑1 (MQ=60)

                AGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGA                                                                            >  SRR4302547.4322958/1‑94 (MQ=60)

                 GAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGAC                                                                           >  SRR4302547.2990023/1‑94 (MQ=60)

                  AACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACC                                                                          >  SRR4302547.41900/1‑94 (MQ=60)

                  AACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACC                                                                          <  SRR4302547.3244080/94‑1 (MQ=60)

                   ACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCT                                                                         <  SRR4302547.6767044/94‑1 (MQ=60)

                     CCTGGATGATGCGCACTGCAGCTGCCAGCACGAAGCAGTTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTAC                                                                       <  SRR4302547.5667579/94‑1 (MQ=60)

                     CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTAC                                                                       <  SRR4302547.5055985/94‑1 (MQ=60)

                     CCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTAC                                                                       >  SRR4302547.2238956/1‑94 (MQ=60)

                      CTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACG                                                                      >  SRR4302547.4092004/1‑94 (MQ=60)

                      CTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACG                                                                      >  SRR4302547.4924538/1‑94 (MQ=60)

                      CTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCACTGCCGGACCTACG                                                                      >  SRR4302547.4953283/1‑94 (MQ=60)

                        GAATGATGCGCACTGCAGCTGCCAGCACGACGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCC                                                                    <  SRR4302547.1713913/94‑1 (MQ=60)

                         AATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCA                                                                   <  SRR4302547.2086030/94‑1 (MQ=60)

                          ATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAG                                                                  >  SRR4302547.3383431/1‑94 (MQ=60)

                            GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAG                                                                <  SRR4302547.6180968/94‑1 (MQ=60)

                            GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAG                                                                >  SRR4302547.4639399/1‑94 (MQ=60)

                            GATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAG                                                                >  SRR4302547.5403032/1‑94 (MQ=60)

                               GCGCCCTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGTCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCA                                                             <  SRR4302547.5217830/94‑1 (MQ=60)

                               GCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCA                                                             <  SRR4302547.3648424/94‑1 (MQ=60)

                               GCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCA                                                             <  SRR4302547.383818/94‑1 (MQ=60)

                                CGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAA                                                            >  SRR4302547.2570204/1‑94 (MQ=60)

                                 GCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAAC                                                           <  SRR4302547.1724287/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                          <  SRR4302547.2150516/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                          <  SRR4302547.4798634/94‑1 (MQ=60)

                                  CACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACC                                                          >  SRR4302547.4300353/1‑94 (MQ=60)

                                   ACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCA                                                         <  SRR4302547.2391561/94‑1 (MQ=60)

                                    CTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAG                                                        >  SRR4302547.3245264/1‑94 (MQ=60)

                                    CTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAG                                                        <  SRR4302547.1380740/94‑1 (MQ=60)

                                     TGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTCACGC‑TTCGGCCAGTGCCGGACCTACACCAGAGTCAACCAGC                                                       >  SRR4302547.988109/1‑94 (MQ=60)

                                      GCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCA                                                      <  SRR4302547.5196949/94‑1 (MQ=60)

                                      GCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCA                                                      <  SRR4302547.6451309/94‑1 (MQ=60)

                                      GCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCA                                                      <  SRR4302547.4552403/94‑1 (MQ=60)

                                        AGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACC                                                    >  SRR4302547.3868945/1‑94 (MQ=60)

                                         GCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCT                                                   <  SRR4302547.3774633/94‑1 (MQ=60)

                                         GCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCT                                                   <  SRR4302547.6670413/94‑1 (MQ=60)

                                          CTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTG                                                  >  SRR4302547.4985228/1‑94 (MQ=60)

                                            GCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTT                                                >  SRR4302547.873157/1‑94 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGGCCATGCCGGTTAACGCCTT‑GCCCAGTGCCGGACCTACGCCTGAGACAATCAGCACCTGTTT                                               >  SRR4302547.2857025/1‑94 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                               <  SRR4302547.5247307/94‑1 (MQ=60)

                                             CCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTT                                               >  SRR4302547.4115187/1‑94 (MQ=60)

                                              CAGCGCGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                              <  SRR4302547.3051216/94‑1 (MQ=60)

                                              CAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTG                                              <  SRR4302547.6174834/94‑1 (MQ=60)

                                               AGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCTCCTGTTTGA                                             >  SRR4302547.420589/1‑94 (MQ=60)

                                                GCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAA                                            >  SRR4302547.4821822/1‑94 (MQ=60)

                                                GCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAA                                            >  SRR4302547.6411515/1‑94 (MQ=60)

                                                 CACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCTAGAGTCAACCAGCACCTGTTTGAAC                                           <  SRR4302547.2190696/94‑1 (MQ=60)

                                                 CACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAAC                                           <  SRR4302547.6754791/94‑1 (MQ=60)

                                                   CGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGATCTACGCCAGAGTCAACCAGCACCTGTTTGAACAC                                         <  SRR4302547.3827709/94‑1 (MQ=60)

                                                    GAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACG                                        <  SRR4302547.1551671/94‑1 (MQ=60)

                                                      AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                      <  SRR4302547.4824510/94‑1 (MQ=60)

                                                      AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                      >  SRR4302547.5611505/1‑94 (MQ=60)

                                                      AGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCC                                      <  SRR4302547.969824/94‑1 (MQ=60)

                                                        CAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGC                                    >  SRR4302547.722135/1‑94 (MQ=60)

                                                         AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCC                                   <  SRR4302547.2644839/94‑1 (MQ=60)

                                                         AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCC                                   >  SRR4302547.2642726/1‑94 (MQ=60)

                                                         AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCC                                   <  SRR4302547.4974063/94‑1 (MQ=60)

                                                         AGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCC                                   >  SRR4302547.4421876/1‑94 (MQ=60)

                                                          GGTGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCC                                  <  SRR4302547.5372396/94‑1 (MQ=60)

                                                            TGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGC                                >  SRR4302547.3043054/1‑94 (MQ=60)

                                                            TGATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGC                                >  SRR4302547.4889254/1‑94 (MQ=60)

                                                             GATAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCA                               <  SRR4302547.4430823/94‑1 (MQ=60)

                                                               TAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACC                             >  SRR4302547.1066724/1‑94 (MQ=60)

                                                               TAGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACC                             >  SRR4302547.668170/1‑94 (MQ=60)

                                                                AGCAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCA                            <  SRR4302547.4614517/94‑1 (MQ=60)

                                                                  CAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAT                          >  SRR4302547.2428683/1‑94 (MQ=60)

                                                                  CAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAT                          >  SRR4302547.1569712/1‑94 (MQ=60)

                                                                  CAATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAAT                          >  SRR4302547.5460823/1‑94 (MQ=60)

                                                                   AATCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATC                         >  SRR4302547.3737316/1‑94 (MQ=60)

                                                                     TCGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCAC                       >  SRR4302547.5397200/1‑94 (MQ=60)

                                                                      TGGCAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACC                      >  SRR4302547.5132893/1‑94 (MQ=60)

                                                                         GAGGCGCATGCCGGGTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGC                   <  SRR4302547.4698324/94‑1 (MQ=60)

                                                                         CAGTCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGC                   <  SRR4302547.4769129/94‑1 (MQ=60)

                                                                         CAGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGC                   >  SRR4302547.585307/1‑94 (MQ=60)

                                                                          AGGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACTCCGCCCGCACCAATCACCAGCA                  >  SRR4302547.1835989/1‑94 (MQ=60)

                                                                           GGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCCGCAG                 >  SRR4302547.1838130/1‑94 (MQ=60)

                                                                           GGCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAG                 >  SRR4302547.6678110/1‑94 (MQ=60)

                                                                            GCCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGA                >  SRR4302547.3665485/1‑94 (MQ=60)

                                                                             CCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAA               >  SRR4302547.6154828/1‑94 (MQ=60)

                                                                             CCCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAA               >  SRR4302547.1324799/1‑94 (MQ=60)

                                                                              CCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT              <  SRR4302547.4547159/94‑1 (MQ=60)

                                                                              CCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT              >  SRR4302547.3388302/1‑94 (MQ=60)

                                                                              CCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT              >  SRR4302547.5864904/1‑94 (MQ=60)

                                                                              CCATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAAT              >  SRR4302547.2132529/1‑94 (MQ=60)

                                                                               CATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG             <  SRR4302547.380648/94‑1 (MQ=60)

                                                                               CATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG             >  SRR4302547.6202822/1‑94 (MQ=60)

                                                                               CATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG             <  SRR4302547.2121857/94‑1 (MQ=60)

                                                                               CATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATG             <  SRR4302547.2356417/94‑1 (MQ=60)

                                                                                ATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGA            >  SRR4302547.4570245/1‑94 (MQ=60)

                                                                                ATGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGA            >  SRR4302547.895113/1‑94 (MQ=60)

                                                                                 TGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAT           <  SRR4302547.5402863/94‑1 (MQ=60)

                                                                                 TGCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGAT           >  SRR4302547.1401729/1‑94 (MQ=60)

                                                                                  GCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATC          >  SRR4302547.1959459/1‑94 (MQ=60)

                                                                                  GCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATC          <  SRR4302547.1237481/94‑1 (MQ=60)

                                                                                  GCCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATC          <  SRR4302547.2507567/94‑1 (MQ=60)

                                                                                   CCGGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCC         >  SRR4302547.3369758/1‑94 (MQ=60)

                                                                                     GGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC       >  SRR4302547.189310/1‑94 (MQ=60)

                                                                                     GGTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCC       <  SRR4302547.79055/94‑1 (MQ=60)

                                                                                      GTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG      <  SRR4302547.2386563/94‑1 (MQ=60)

                                                                                      GTTAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCG      >  SRR4302547.2003425/1‑94 (MQ=60)

                                                                                        TAACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCC    <  SRR4302547.6240687/94‑1 (MQ=60)

                                                                                         AACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG   <  SRR4302547.3392972/94‑1 (MQ=60)

                                                                                         AACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCG   <  SRR4302547.1440141/94‑1 (MQ=60)

                                                                                          ACGC‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGG  >  SRR4302547.4825731/1‑94 (MQ=60)

AACAGGCTACGGTGGCAGAACCCTGAATGATGCGCACTGCAGCTGCCAGCACGAAGCAGGTGATAGCAATCGGCAGGCCCATGCCGGTTAACG‑‑TTCGCCCAGTGCCGGACCTACGCCAGAGTCAACCAGCACCTGTTTGAACACGCCGCCCGCACCAATCACCAGCAGAATGATCCCCGCCGG  >  NC_000913/3573608‑3573790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`