Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	521	238.2	12299412	96.0%	11807435	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,905,202	T→C	D2G (GAC→GGC)	phoU ←	PhoU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,905,202	0	T	C	98.9%	1006.6 / ‑2.1	283	D2G (GAC→GGC)	phoU	PhoU
Reads supporting (aligned to +/- strand): ref base T (3/0); new base C (143/135); total (148/135)
Fisher's exact test for biased strand distribution p-value = 2.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.60e-01

Only 100 of 293 total aligned reads displayed.

ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGT  >  NC_000913/3905112‑3905291

accaTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGccc                                                                                         >  1:4175263/1‑93 (MQ=255)

 ccaTGCCGACCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCa                                                                                        >  1:1629658/1‑93 (MQ=255)

  caTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAt                                                                                       <  2:5162707/93‑1 (MQ=255)

   aTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATa                                                                                      <  2:4857973/93‑1 (MQ=255)

    tGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATaa                                                                                     <  1:2420896/93‑1 (MQ=255)

    tGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATaa                                                                                     <  1:4681278/93‑1 (MQ=255)

    tGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATaa                                                                                     >  1:710718/1‑93 (MQ=255)

    tGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATaa                                                                                     <  2:3252519/93‑1 (MQ=255)

    tGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATaa                                                                                     <  2:4832775/93‑1 (MQ=255)

        gccCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCa                                                                                 <  2:552984/93‑1 (MQ=255)

          ccATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACt                                                                               >  1:5391134/1‑93 (MQ=255)

           cATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTc                                                                              >  1:4270313/1‑93 (MQ=255)

           cATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTc                                                                              >  2:5400236/1‑93 (MQ=255)

            aTGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTcc                                                                             >  1:2963986/1‑93 (MQ=255)

             tGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCt                                                                            <  2:5222137/93‑1 (MQ=255)

             tGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCt                                                                            >  1:2528249/1‑93 (MQ=255)

             tGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCt                                                                            >  1:2858906/1‑93 (MQ=255)

              ggTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTg                                                                           >  2:4598725/1‑93 (MQ=255)

               gTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGa                                                                          <  1:2766926/93‑1 (MQ=255)

                tcatcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGaa                                                                         >  2:699971/1‑93 (MQ=255)

                tcatcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGaa                                                                         <  2:1830952/93‑1 (MQ=255)

                  atcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATc                                                                       <  1:4812625/93‑1 (MQ=255)

                  atcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATc                                                                       >  2:2736111/1‑93 (MQ=255)

                  atcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATc                                                                       >  1:2099234/1‑93 (MQ=255)

                    caCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCaa                                                                     <  1:3224694/93‑1 (MQ=255)

                    caCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCaa                                                                     >  2:5331607/1‑93 (MQ=255)

                     aCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAc                                                                    >  2:2515481/1‑93 (MQ=255)

                       cTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCg                                                                  <  2:875594/93‑1 (MQ=255)

                          cgtgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTaa                                                               <  2:2393855/93‑1 (MQ=255)

                          cgtgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTaa                                                               <  1:1105533/93‑1 (MQ=255)

                          cgtgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTaa                                                               <  2:4393197/93‑1 (MQ=255)

                            tgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACg                                                             >  1:1057593/1‑93 (MQ=255)

                            tgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACg                                                             >  2:2602037/1‑93 (MQ=255)

                               ggATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGAcc                                                          <  1:358791/93‑1 (MQ=255)

                                gATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCg                                                         >  1:2266742/1‑93 (MQ=255)

                                gATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCg                                                         <  2:1023970/93‑1 (MQ=255)

                                gATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCg                                                         >  1:513573/1‑93 (MQ=255)

                                  tACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGt                                                       <  2:1966588/93‑1 (MQ=255)

                                   aCTTTCCAGTTAGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTg                                                      >  1:1336291/1‑93 (MQ=255)

                                     tttCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAt                                                    >  1:588979/1‑93 (MQ=255)

                                     tttCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAt                                                    <  1:5833603/93‑1 (MQ=255)

                                      ttCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATg                                                   >  1:1802391/1‑93 (MQ=255)

                                      gtCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATg                                                   <  1:5460314/92‑1 (MQ=255)

                                       tCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGt                                                  <  1:6144092/93‑1 (MQ=255)

                                        ccAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTa                                                 >  1:3778625/1‑93 (MQ=255)

                                        ccAGGTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTa                                                 <  1:3433128/93‑1 (MQ=255)

                                         cAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAg                                                >  2:4647466/1‑93 (MQ=255)

                                          aGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGt                                               >  2:1412885/1‑93 (MQ=255)

                                           gTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtc                                              <  2:78556/93‑1 (MQ=255)

                                           gTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtc                                              >  2:1574386/1‑93 (MQ=255)

                                           gTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtc                                              >  2:5798127/1‑93 (MQ=255)

                                           gTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtc                                              >  2:3692860/1‑93 (MQ=255)

                                             tCGGCGTTGAACTTACCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtctt                                            >  2:2825904/1‑93 (MQ=255)

                                              cGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtcttc                                           <  2:3048128/93‑1 (MQ=255)

                                              cGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtcttc                                           <  1:3983901/93‑1 (MQ=255)

                                              cGGCGTTGAACTGACCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtcttc                                           <  1:59931/93‑1 (MQ=255)

                                               ggCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtcttct                                          <  2:6092480/93‑1 (MQ=255)

                                               ggCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtcttct                                          >  1:5518572/1‑93 (MQ=255)

                                                gCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtg                                         >  2:4007282/1‑93 (MQ=255)

                                                 cGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgt                                        >  1:3171860/1‑93 (MQ=255)

                                                  gTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtt                                       <  1:2927078/93‑1 (MQ=255)

                                                  gTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtt                                       >  1:385106/1‑93 (MQ=255)

                                                   ttGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgttt                                      >  1:1871901/1‑93 (MQ=255)

                                                   ttGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgttt                                      >  1:3560099/1‑93 (MQ=255)

                                                    tGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttg                                     <  2:2211515/93‑1 (MQ=255)

                                                       aCTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTgtttgttt                                  <  2:2151829/93‑1 (MQ=255)

                                                       aCTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTgtttgttt                                  <  2:2075917/93‑1 (MQ=255)

                                                         tGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTttct                                <  1:333351/93‑1 (MQ=255)

                                                          ggCCGGAAATATGTTTATTAAGATTGAGGCTGCCCATAACGCGCTCCTGAATCAACCGTAACGGCCGGTGATGTAGTCTTCTGTTTGTttctt                               <  2:3372805/93‑1 (MQ=255)

                                                            ccGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCg                             <  1:4437675/93‑1 (MQ=255)

                                                            ccGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCg                             <  2:4910753/93‑1 (MQ=255)

                                                             ctgAAATATGTTTATTAAGATTGAGACTGCACATAACGCACTCCTGAATCAGCCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGc                            <  1:1234892/91‑1 (MQ=255)

                                                             cGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGc                            >  2:2965217/1‑93 (MQ=255)

                                                             cGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGc                            >  1:2195211/1‑93 (MQ=255)

                                                              ggAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCt                           >  1:1151648/1‑93 (MQ=255)

                                                               gAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTg                          <  2:2583229/93‑1 (MQ=255)

                                                               gAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTg                          >  1:1529498/1‑93 (MQ=255)

                                                                aaaTATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTgg                         >  1:4768613/1‑93 (MQ=255)

                                                                  atatGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCt                       >  2:4174007/1‑93 (MQ=255)

                                                                   tatGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCtt                      <  1:10392/93‑1 (MQ=255)

                                                                     tGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTgg                    >  1:4123143/1‑93 (MQ=255)

                                                                     tGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTgg                    >  1:4945451/1‑93 (MQ=255)

                                                                     tGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGCAGTCTTCTGTTTGTTTCTTCTGTGGCTTgg                    >  2:126388/1‑93 (MQ=255)

                                                                       tttATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTg                  >  2:4719647/1‑93 (MQ=255)

                                                                       tttATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTg                  >  2:1349040/1‑93 (MQ=255)

                                                                       tttATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCAGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTg                  >  2:3867996/1‑93 (MQ=255)

                                                                         tattaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGaa                <  2:1119209/93‑1 (MQ=255)

                                                                         tattaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGaa                <  1:3529135/93‑1 (MQ=255)

                                                                          attaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAc               <  2:5863812/93‑1 (MQ=255)

                                                                            taAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAg             >  2:6145552/1‑93 (MQ=255)

                                                                             aaGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGa            >  1:4562267/1‑93 (MQ=255)

                                                                              aGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGAt           <  2:3487160/93‑1 (MQ=255)

                                                                              aGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGAt           <  2:5947563/93‑1 (MQ=255)

                                                                               aaTTGAGACGGCCCATAACGCACGCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATc          <  1:4050728/92‑1 (MQ=255)

                                                                                aTTGAGACTGCCCATAGCGCACTCCTGAATCAACCGTAACGACCGGTCATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCg         <  2:6015085/93‑1 (MQ=255)

                                                                                 ttGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGt        >  1:2031662/1‑93 (MQ=255)

                                                                                  tGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTTATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTc       <  2:1447324/93‑1 (MQ=255)

                                                                                    agaCTGACCATAACGCAATCCTGAATCAACCGTAACGAACGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCg     >  1:3396046/1‑93 (MQ=255)

                                                                                     gaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCgt    <  1:325497/93‑1 (MQ=255)

                                                                                     gaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCgt    >  2:5002807/1‑93 (MQ=255)

ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGT  >  NC_000913/3905112‑3905291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  NC_000913/3905109‑3905295

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGC                                                                                               >  SRR4302532.2276522/1‑94 (MQ=60)

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGC                                                                                               >  SRR4302532.4745093/1‑94 (MQ=60)

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGC                                                                                               <  SRR4302532.5262067/94‑1 (MQ=60)

 CCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCC                                                                                              >  SRR4302532.2813991/1‑94 (MQ=60)

 CCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCC                                                                                              >  SRR4302532.3573221/1‑94 (MQ=60)

  CACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCC                                                                                             <  SRR4302532.4229602/94‑1 (MQ=60)

  CACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCC                                                                                             >  SRR4302532.4315291/1‑94 (MQ=60)

  CACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTCATTAAGATTGAGACTGCCC                                                                                             >  SRR4302532.5673037/1‑94 (MQ=60)

   ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTTGGCGTTGACCTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCA                                                                                            >  SRR4302532.3971628/1‑94 (MQ=60)

   ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCA                                                                                            >  SRR4302532.2932814/1‑94 (MQ=60)

   ACCATGCCGACCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCA                                                                                            >  SRR4302532.1684824/1‑94 (MQ=60)

    CCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAT                                                                                           <  SRR4302532.3013717/94‑1 (MQ=60)

    CCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAT                                                                                           <  SRR4302532.3011299/94‑1 (MQ=60)

     CATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATA                                                                                          <  SRR4302532.1625433/94‑1 (MQ=60)

      ATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAA                                                                                         >  SRR4302532.735005/1‑94 (MQ=60)

       TGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAAC                                                                                        <  SRR4302532.2501371/94‑1 (MQ=60)

       TGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAAC                                                                                        <  SRR4302532.4840917/94‑1 (MQ=60)

       TGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAAC                                                                                        >  SRR4302532.4384984/1‑94 (MQ=60)

       TGCCCCCCATTGGCATCCCCTGCGTGCCGATTCTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGGTTATTAAGATTGAGACTGCCCATAAC                                                                                        <  SRR4302532.4205818/94‑1 (MQ=60)

         CCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGC                                                                                      <  SRR4302532.4943363/94‑1 (MQ=60)

         CCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGC                                                                                      <  SRR4302532.6176660/94‑1 (MQ=60)

          CGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCA                                                                                     >  SRR4302532.5267847/1‑94 (MQ=60)

            CCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACT                                                                                   >  SRR4302532.4244330/1‑94 (MQ=60)

            CCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACT                                                                                   >  SRR4302532.5577911/1‑94 (MQ=60)

            CCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACT                                                                                   >  SRR4302532.5274590/1‑94 (MQ=60)

             CCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTC                                                                                  >  SRR4302532.3318338/1‑94 (MQ=60)

             CCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTC                                                                                  >  SRR4302532.4414098/1‑94 (MQ=60)

             CCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGATTATTAAGATTGAGACTGCCCATAACGCACTC                                                                                  >  SRR4302532.4414099/1‑94 (MQ=60)

              CATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCC                                                                                 <  SRR4302532.2067648/94‑1 (MQ=60)

              CATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCC                                                                                 >  SRR4302532.3062147/1‑94 (MQ=60)

              CATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCC                                                                                 >  SRR4302532.3443242/1‑94 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                >  SRR4302532.1159291/1‑94 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                >  SRR4302532.2954510/1‑94 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                <  SRR4302532.5036843/94‑1 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                <  SRR4302532.1873202/94‑1 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                >  SRR4302532.2612610/1‑94 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                >  SRR4302532.113764/1‑94 (MQ=60)

                  GTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAA                                                                             <  SRR4302532.2859829/94‑1 (MQ=60)

                   TCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAAT                                                                            <  SRR4302532.4138099/94‑1 (MQ=60)

                   TCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAAT                                                                            <  SRR4302532.6182124/94‑1 (MQ=60)

                    CATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATC                                                                           >  SRR4302532.2169265/1‑94 (MQ=60)

                    CATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATC                                                                           >  SRR4302532.2169264/1‑94 (MQ=60)

                    CATCACCTGCGTGCGGATACTTGCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATC                                                                           >  SRR4302532.4149847/1‑94 (MQ=60)

                     ATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCA                                                                          <  SRR4302532.4978353/94‑1 (MQ=60)

                       CACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAC                                                                        <  SRR4302532.3331734/94‑1 (MQ=60)

                          CTGCGTGCGGATACTTTCCAGTTCGGCGTTTAACTGGCCGGAAATATGTTTATTAAGTTTGAGACTGCCCATAACGCACTCCTGAATCAACCGT                                                                     >  SRR4302532.646533/1‑94 (MQ=60)

                             CGTGCGGATACTTTCGAGTTCGGCGGTGGACTGGCCGGAAATATGTTTATTAAGATTGAGACCGCCCATAACGCACTCCTGAATCAAGCGCAAC                                                                  >  SRR4302532.2558675/1‑94 (MQ=60)

                             CGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAAC                                                                  <  SRR4302532.1142491/94‑1 (MQ=60)

                              GTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACG                                                                 <  SRR4302532.4474255/94‑1 (MQ=60)

                              GTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACG                                                                 >  SRR4302532.1093239/1‑94 (MQ=60)

                              GTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACG                                                                 >  SRR4302532.1147368/1‑94 (MQ=60)

                                 CGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACC                                                              >  SRR4302532.3470430/1‑94 (MQ=60)

                                 CGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACC                                                              <  SRR4302532.3372987/94‑1 (MQ=60)

                                 CGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACC                                                              >  SRR4302532.1970584/1‑94 (MQ=60)

                                  GGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGATTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             <  SRR4302532.193364/94‑1 (MQ=60)

                                  GGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             >  SRR4302532.3951969/1‑94 (MQ=60)

                                  GGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             >  SRR4302532.5713231/1‑94 (MQ=60)

                                  GGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             <  SRR4302532.371223/94‑1 (MQ=60)

                                  GGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             >  SRR4302532.531498/1‑94 (MQ=60)

                                  GGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             >  SRR4302532.2341976/1‑94 (MQ=60)

                                    ATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCCACCGTAACGACCGGT                                                           >  SRR4302532.1203132/1‑94 (MQ=60)

                                    ATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGT                                                           <  SRR4302532.1251108/94‑1 (MQ=60)

                                    ATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGT                                                           >  SRR4302532.2154672/1‑94 (MQ=60)

                                    ATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGT                                                           <  SRR4302532.2244251/94‑1 (MQ=60)

                                    ATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGT                                                           >  SRR4302532.5607079/1‑94 (MQ=60)

                                     TACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTG                                                          <  SRR4302532.4085736/94‑1 (MQ=60)

                                     TACTTTCCAGTTAGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTG                                                          >  SRR4302532.1380987/1‑94 (MQ=60)

                                      ACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGA                                                         >  SRR4302532.5643786/1‑94 (MQ=60)

                                      ACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGA                                                         >  SRR4302532.4868420/1‑94 (MQ=60)

                                       CTTTCGAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAT                                                        <  SRR4302532.1692307/94‑1 (MQ=60)

                                       CTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAT                                                        >  SRR4302532.370647/1‑94 (MQ=60)

                                       CTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAT                                                        <  SRR4302532.3225136/94‑1 (MQ=60)

                                       CTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAT                                                        >  SRR4302532.609529/1‑94 (MQ=60)

                                       CTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTACTAAGATTGAGACTGCCCATAACGCACTCCTGTATCCAGCGTAACGACCGGGGAT                                                        >  SRR4302532.370645/1‑94 (MQ=60)

                                        TTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATG                                                       <  SRR4302532.1096065/94‑1 (MQ=60)

                                        TTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATG                                                       >  SRR4302532.1862567/1‑94 (MQ=60)

                                        TTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATG                                                       <  SRR4302532.6036118/94‑1 (MQ=60)

                                         TTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGT                                                      <  SRR4302532.3867141/94‑1 (MQ=60)

                                         TTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGT                                                      <  SRR4302532.3605774/94‑1 (MQ=60)

                                         GTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGT                                                      <  SRR4302532.5649623/94‑1 (MQ=60)

                                          TCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTA                                                     >  SRR4302532.3905904/1‑94 (MQ=60)

                                          TCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTA                                                     <  SRR4302532.6356016/94‑1 (MQ=60)

                                           CCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAG                                                    <  SRR4302532.3520756/94‑1 (MQ=60)

                                           CCAGGTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAG                                                    <  SRR4302532.3548156/94‑1 (MQ=60)

                                              GTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCT                                                 <  SRR4302532.2904470/94‑1 (MQ=60)

                                               TTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTT                                                <  SRR4302532.2277386/94‑1 (MQ=60)

                                                 CGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCT                                              >  SRR4302532.5710077/1‑94 (MQ=60)

                                                 CGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCT                                              <  SRR4302532.4118101/94‑1 (MQ=60)

                                                 CGGCGTTGAACTGACCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCT                                              <  SRR4302532.62089/94‑1 (MQ=60)

                                                 CGGCGTTAAACTGGCAGGAGATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTTAATCAACCGGAACGGCCGATGAGGTAGTCTTCT                                              <  SRR4302532.4255088/94‑1 (MQ=53)

                                                   GCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGT                                            >  SRR4302532.352625/1‑94 (MQ=60)

                                                   GCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGT                                            >  SRR4302532.3277203/1‑94 (MQ=60)

                                                    CGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTT                                           >  SRR4302532.398583/1‑94 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          <  SRR4302532.3661388/94‑1 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          >  SRR4302532.1933895/1‑94 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          >  SRR4302532.2357437/1‑94 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          <  SRR4302532.3024462/94‑1 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          >  SRR4302532.3679223/1‑94 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACAACCGGTGATGTAGTCTTCTGTTT                                          >  SRR4302532.3648273/1‑94 (MQ=60)

                                                     GTTGAACTGACCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          <  SRR4302532.4065915/94‑1 (MQ=60)

                                                      TTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTG                                         <  SRR4302532.145894/94‑1 (MQ=60)

                                                       TGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGT                                        >  SRR4302532.3564208/1‑94 (MQ=60)

                                                        GAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTT                                       <  SRR4302532.2414088/94‑1 (MQ=60)

                                                           CTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCT                                    >  SRR4302532.580353/1‑94 (MQ=60)

                                                           CTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCT                                    <  SRR4302532.470585/94‑1 (MQ=60)

                                                            TGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTT                                   <  SRR4302532.344915/94‑1 (MQ=60)

                                                              GCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCG                                 <  SRR4302532.2280383/94‑1 (MQ=60)

                                                              GCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCG                                 <  SRR4302532.4740105/94‑1 (MQ=60)

                                                              GCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCG                                 <  SRR4302532.438248/94‑1 (MQ=60)

                                                               CCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGC                                >  SRR4302532.2268335/1‑94 (MQ=60)

                                                               CCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGC                                <  SRR4302532.4588904/94‑1 (MQ=60)

                                                               CCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGC                                >  SRR4302532.253859/1‑94 (MQ=60)

                                                                CTGAAATATGTTTATTAAGATTGAGACTGCACATAACGCACTCCTGAATCAGCCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               <  SRR4302532.1276201/94‑1 (MQ=60)

                                                                CGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               <  SRR4302532.751777/94‑1 (MQ=60)

                                                                CGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               >  SRR4302532.1190079/1‑94 (MQ=60)

                                                                CGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               >  SRR4302532.3040510/1‑94 (MQ=60)

                                                                CGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               <  SRR4302532.6054362/94‑1 (MQ=60)

                                                                 GGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTG                              >  SRR4302532.1581162/1‑94 (MQ=60)

                                                                  GAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGG                             >  SRR4302532.3147337/1‑94 (MQ=60)

                                                                  GAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGG                             >  SRR4302532.4932253/1‑94 (MQ=60)

                                                                   AAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGC                            >  SRR4302532.1595124/1‑94 (MQ=60)

                                                                   AAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGC                            <  SRR4302532.5103545/94‑1 (MQ=60)

                                                                   AAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGC                            >  SRR4302532.220294/1‑94 (MQ=60)

                                                                   AAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGC                            <  SRR4302532.3479565/94‑1 (MQ=60)

                                                                    AATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCT                           >  SRR4302532.2656807/1‑94 (MQ=60)

                                                                     ATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTT                          >  SRR4302532.6209027/1‑94 (MQ=60)

                                                                     ATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTT                          >  SRR4302532.6078837/1‑94 (MQ=60)

                                                                      TATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTG                         <  SRR4302532.10836/94‑1 (MQ=60)

                                                                       ATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGG                        >  SRR4302532.5115187/1‑94 (MQ=60)

                                                                       ATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGG                        >  SRR4302532.4261523/1‑94 (MQ=60)

                                                                        tggttaggttgagTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTCGTGTCTGCGCTGGCGTGGT                       >  SRR4302532.5690181/14‑94 (MQ=60)

                                                                        TGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGT                       >  SRR4302532.1461924/1‑94 (MQ=60)

                                                                         GTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTG                      >  SRR4302532.336461/1‑94 (MQ=60)

                                                                         GTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTG                      >  SRR4302532.336462/1‑94 (MQ=60)

                                                                          TTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGA                     >  SRR4302532.3046254/1‑94 (MQ=60)

                                                                           tgagTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTATCGACCGGTGATGTAGTCTTCTGTTTGTGTCTTCGCTGGCTTGGTGAA                    >  SRR4302532.5677013/5‑94 (MQ=60)

                                                                           TTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAA                    >  SRR4302532.2688322/1‑94 (MQ=60)

                                                                           TTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAA                    >  SRR4302532.427468/1‑94 (MQ=60)

                                                                            TATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAC                   <  SRR4302532.492700/94‑1 (MQ=60)

                                                                            TATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAC                   <  SRR4302532.3647258/94‑1 (MQ=60)

                                                                              TTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAG                 >  SRR4302532.3693904/1‑94 (MQ=60)

                                                                              TTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAG                 >  SRR4302532.1336669/1‑94 (MQ=60)

                                                                              TTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAG                 <  SRR4302532.3294746/94‑1 (MQ=60)

                                                                              TTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAG                 <  SRR4302532.494473/94‑1 (MQ=60)

                                                                               TAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGA                <  SRR4302532.6361788/94‑1 (MQ=60)

                                                                               TAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGA                >  SRR4302532.4717898/1‑94 (MQ=60)

                                                                                 AGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATC              <  SRR4302532.548575/94‑1 (MQ=60)

                                                                                  GATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCG             <  SRR4302532.4745069/94‑1 (MQ=60)

                                                                                  AATTGAGACGGCCCATAACGCACGCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCG             <  SRR4302532.4187035/94‑1 (MQ=60)

                                                                                   ATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGT            >  SRR4302532.1329631/1‑94 (MQ=60)

                                                                                   ATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGT            >  SRR4302532.4277045/1‑94 (MQ=60)

                                                                                   ATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGT            >  SRR4302532.2099373/1‑94 (MQ=60)

                                                                                      GAGACTGACCATAACGCAATCCTGAATCAACCGTAACGAACGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCG         >  SRR4302532.3509702/1‑94 (MQ=60)

                                                                                       AGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACGGATCGTCCGT        >  SRR4302532.1815816/1‑94 (MQ=60)

                                                                                       AGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGT        >  SRR4302532.4625324/1‑94 (MQ=60)

                                                                                        GACTGCCCATAACGCTCTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTG       <  SRR4302532.952055/94‑1 (MQ=60)

                                                                                        GACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTG       >  SRR4302532.6286578/1‑94 (MQ=60)

                                                                                        GACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTG       <  SRR4302532.336789/94‑1 (MQ=60)

                                                                                          CTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTT     >  SRR4302532.3538996/1‑94 (MQ=60)

                                                                                            GCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGC   >  SRR4302532.4822649/1‑94 (MQ=60)

                                                                                             CCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  SRR4302532.2646083/1‑94 (MQ=60)

                                                                                             CCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGGGTTGCT  >  SRR4302532.384126/1‑94 (MQ=60)

                                                                                             CCCATAACGCACTCCTGAATCAACCGTAACGACCGGGGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCGGTGTTGCT  >  SRR4302532.1020532/1‑94 (MQ=60)

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  NC_000913/3905109‑3905295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`