Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,905,202	T→C	D2G (GAC→GGC)	phoU ←	PhoU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,905,202	0	T	C	100.0%	1051.3 / NA	283	D2G (GAC→GGC)	phoU	PhoU
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (144/139); total (144/139)

Only 100 of 288 total aligned reads displayed.

ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGT  >  NC_000913/3905112‑3905291

accaTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGccc                                                                                         >  1:4676131/1‑93 (MQ=255)

accaTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGccc                                                                                         <  2:4683473/93‑1 (MQ=255)

accaTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGccc                                                                                         >  2:4671625/1‑93 (MQ=255)

 ccaTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCa                                                                                        >  2:1773447/1‑93 (MQ=255)

 ccaTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCa                                                                                        >  1:2714046/1‑93 (MQ=255)

  caTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAt                                                                                       <  1:5268876/93‑1 (MQ=255)

  caTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAt                                                                                       <  2:4230104/93‑1 (MQ=255)

   aTGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATa                                                                                      <  2:4499386/93‑1 (MQ=255)

    tGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATaa                                                                                     <  1:3885060/93‑1 (MQ=255)

       cgccCATGGTCATCACCGGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGc                                                                                  <  2:1117479/93‑1 (MQ=255)

         cccATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCAc                                                                                <  2:6133602/93‑1 (MQ=255)

           cATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTc                                                                              <  1:28648/93‑1 (MQ=255)

            aTGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTcc                                                                             <  2:2530976/93‑1 (MQ=255)

             tGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCt                                                                            >  1:1371578/1‑93 (MQ=255)

              ggTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTg                                                                           <  2:3594271/93‑1 (MQ=255)

                   tcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCa                                                                      >  2:4136534/1‑93 (MQ=255)

                   tcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCa                                                                      >  1:6635860/1‑93 (MQ=255)

                   tcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCa                                                                      >  1:3277427/1‑93 (MQ=255)

                   tcaCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCa                                                                      >  1:4906047/1‑93 (MQ=255)

                    caCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCaa                                                                     <  1:623631/93‑1 (MQ=255)

                     cccTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAc                                                                    <  2:5163323/92‑1 (MQ=255)

                     cccTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAc                                                                    <  2:3065005/92‑1 (MQ=255)

                     aCCTGCGTGCTGATACGTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAc                                                                    <  1:1053581/93‑1 (MQ=255)

                     aCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAc                                                                    >  1:5435084/1‑93 (MQ=255)

                      ccTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAcc                                                                   >  2:6048811/1‑93 (MQ=255)

                       cTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCg                                                                  <  1:4214829/93‑1 (MQ=255)

                       cTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCg                                                                  <  1:1636493/93‑1 (MQ=255)

                        tgcgtgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGt                                                                 >  2:1200609/1‑93 (MQ=255)

                          cgttcgGATACTTTCCAGTGCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACGGCCCATAACGCACTCCTGAATCAACCGTaa                                                               <  2:5791984/93‑1 (MQ=255)

                           gtgcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAAc                                                              <  1:4444707/93‑1 (MQ=255)

                             gcgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGa                                                            >  1:2238965/1‑93 (MQ=255)

                              cgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGAc                                                           <  2:2867274/93‑1 (MQ=255)

                              cgGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGAc                                                           <  2:2978965/93‑1 (MQ=255)

                                gATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCg                                                         >  2:5317738/1‑93 (MQ=255)

                                gATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCg                                                         >  2:3146662/1‑93 (MQ=255)

                                 aTACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCgg                                                        <  2:2702528/93‑1 (MQ=255)

                                  tACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTTAGACTGCCCATAACGCACTCCTGAATCCACCGTAACCACCGGt                                                       >  2:4857250/1‑93 (MQ=255)

                                    cTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGa                                                     <  2:720931/93‑1 (MQ=255)

                                     tttCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGAt                                                    >  2:2804925/1‑93 (MQ=255)

                                       tCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGt                                                  >  2:24535/1‑93 (MQ=255)

                                         cAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAg                                                <  1:2541695/93‑1 (MQ=255)

                                         cAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAg                                                <  2:6244324/93‑1 (MQ=255)

                                           gTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtc                                              <  2:4563544/93‑1 (MQ=255)

                                           gTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGCGATGTAGtc                                              >  2:6369084/1‑93 (MQ=255)

                                             tCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtctt                                            <  1:655302/93‑1 (MQ=255)

                                             tCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtctt                                            <  2:2652707/93‑1 (MQ=255)

                                              cGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGtcttc                                           <  2:124473/93‑1 (MQ=255)

                                                gCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtg                                         >  1:1443321/1‑93 (MQ=255)

                                                 cGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgt                                        <  2:5476689/93‑1 (MQ=255)

                                                 cGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATAAACCGTAACGACCGGTGATGTAGTCTTCtgt                                        <  2:2230021/93‑1 (MQ=255)

                                                  gTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtt                                       >  2:1857904/1‑93 (MQ=255)

                                                  gTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtt                                       <  2:217640/93‑1 (MQ=255)

                                                  gTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtt                                       >  2:3703236/1‑93 (MQ=255)

                                                   ttGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgttt                                      <  1:741732/93‑1 (MQ=255)

                                                     gAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttgt                                    <  2:4352274/93‑1 (MQ=255)

                                                     gAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttgt                                    <  2:5635437/93‑1 (MQ=255)

                                                     gAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttgt                                    <  2:4946266/93‑1 (MQ=255)

                                                     gAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttgt                                    >  1:2558860/1‑93 (MQ=255)

                                                      aaCTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttgtt                                   >  2:5954483/1‑93 (MQ=255)

                                                      aaCTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCtgtttgtt                                   >  2:3278791/1‑93 (MQ=255)

                                                       aCTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTgtttgttt                                  >  1:34704/1‑93 (MQ=255)

                                                         tGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTttct                                <  1:5796027/93‑1 (MQ=255)

                                                         tGGCCGAAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTttct                                <  1:498761/93‑1 (MQ=255)

                                                          ggCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTttctt                               <  2:5283233/93‑1 (MQ=255)

                                                          ggCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTttctt                               <  1:587887/93‑1 (MQ=255)

                                                             cGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGc                            >  1:5576954/1‑93 (MQ=255)

                                                             cGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGc                            <  1:2386857/93‑1 (MQ=255)

                                                              ggAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCt                           >  2:378879/1‑93 (MQ=255)

                                                              ggAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCt                           >  2:3871481/1‑93 (MQ=255)

                                                              ggAAAGATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCt                           >  1:4325691/1‑93 (MQ=255)

                                                              gaaaaTATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCt                           <  2:1315652/91‑1 (MQ=255)

                                                                aaaTATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTgg                         >  1:4423321/1‑93 (MQ=255)

                                                                 aaTATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGc                        <  1:2091513/93‑1 (MQ=255)

                                                                   tatGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCtt                      <  2:6588424/93‑1 (MQ=255)

                                                                   tatGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCtt                      <  1:3595373/93‑1 (MQ=255)

                                                                   tatGTTTATTAAGATTGAGACTACCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCtt                      <  1:853750/93‑1 (MQ=255)

                                                                      ttttATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGt                   <  2:3425614/92‑1 (MQ=255)

                                                                      gTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGt                   <  2:5992098/93‑1 (MQ=255)

                                                                      gTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGt                   <  2:5883229/93‑1 (MQ=255)

                                                                       tttATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTg                  <  2:1489236/93‑1 (MQ=255)

                                                                         tattaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGaa                >  1:5688314/1‑93 (MQ=255)

                                                                         tattaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGaa                >  1:406910/1‑93 (MQ=255)

                                                                         tattaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGaa                >  1:4760492/1‑93 (MQ=255)

                                                                          attaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAc               >  1:767986/1‑93 (MQ=255)

                                                                          attaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAc               <  2:2319973/93‑1 (MQ=255)

                                                                           ttaAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACa              >  2:1008261/1‑93 (MQ=255)

                                                                            taAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAg             <  2:4359535/93‑1 (MQ=255)

                                                                             aaGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGa            <  1:6114776/93‑1 (MQ=255)

                                                                              aGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGAt           >  1:3427881/1‑93 (MQ=255)

                                                                              aGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGAt           <  1:3562161/93‑1 (MQ=255)

                                                                               gATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATc          >  2:2006243/1‑93 (MQ=255)

                                                                               gATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATc          <  1:1926667/93‑1 (MQ=255)

                                                                                aTTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCg         >  1:604570/1‑93 (MQ=255)

                                                                                   gagaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTcc      >  1:3724553/1‑93 (MQ=255)

                                                                                   gagaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTcc      >  2:482394/1‑93 (MQ=255)

                                                                                    agaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCg     >  2:1526963/1‑93 (MQ=255)

                                                                                    agaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCg     <  1:2969396/93‑1 (MQ=255)

                                                                                     gaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCgt    <  1:3035195/93‑1 (MQ=255)

                                                                                     gaCTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCgt    >  2:671900/1‑93 (MQ=255)

                                                                                       cTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCgtgt  >  1:2823445/1‑93 (MQ=255)

ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGT  >  NC_000913/3905112‑3905291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  NC_000913/3905109‑3905295

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGC                                                                                               <  SRR4302547.6280460/94‑1 (MQ=60)

 CCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCC                                                                                              >  SRR4302547.2622857/1‑94 (MQ=60)

  CACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCC                                                                                             >  SRR4302547.525430/1‑94 (MQ=60)

  CACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCC                                                                                             >  SRR4302547.4772982/1‑94 (MQ=60)

   ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCA                                                                                            >  SRR4302547.2768528/1‑94 (MQ=60)

   ACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCA                                                                                            >  SRR4302547.6344507/1‑94 (MQ=60)

    CCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAT                                                                                           <  SRR4302547.5607877/94‑1 (MQ=60)

     CATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATA                                                                                          <  SRR4302547.5377427/94‑1 (MQ=60)

     CATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATA                                                                                          >  SRR4302547.500936/1‑94 (MQ=60)

      ATGCCTCACATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAA                                                                                         <  SRR4302547.5854435/94‑1 (MQ=60)

       TGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAAC                                                                                        >  SRR4302547.3238759/1‑94 (MQ=60)

       TGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAAC                                                                                        >  SRR4302547.721015/1‑94 (MQ=60)

       TGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAAC                                                                                        <  SRR4302547.3964090/94‑1 (MQ=60)

        GCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACG                                                                                       >  SRR4302547.2375972/1‑94 (MQ=60)

        GCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCAGAAATATGTTTATTAAGATTGAGACTGCCCATAGCG                                                                                       <  SRR4302547.2919185/94‑1 (MQ=60)

         CCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGC                                                                                      >  SRR4302547.3877690/1‑94 (MQ=60)

         CCGCCCATGGTCATCACCTGCGTGCGGATACTTACCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGC                                                                                      <  SRR4302547.5213422/94‑1 (MQ=60)

           GCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCAC                                                                                    <  SRR4302547.1464942/94‑1 (MQ=60)

            CCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACT                                                                                   <  SRR4302547.5990074/94‑1 (MQ=60)

            CCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACT                                                                                   >  SRR4302547.4798955/1‑94 (MQ=60)

              CATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCC                                                                                 <  SRR4302547.29168/94‑1 (MQ=60)

              CATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCC                                                                                 <  SRR4302547.4402260/94‑1 (MQ=60)

               ATGTTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                <  SRR4302547.3653126/94‑1 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                >  SRR4302547.1399095/1‑94 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                >  SRR4302547.3659499/1‑94 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                <  SRR4302547.5996081/94‑1 (MQ=60)

               ATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCT                                                                                <  SRR4302547.4299689/94‑1 (MQ=60)

                agataataacataaatgatgattCTTTCAAGTTCGGCGTTTAAAGGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCAAAACGCACTCCTG                                                                               <  SRR4302547.3904835/71‑1 (MQ=46)

                TGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGGCGGAAATATGGTTATTAAGATTGAGACTGCACATAACGCACTCCTG                                                                               >  SRR4302547.2657373/1‑94 (MQ=60)

                 GGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGA                                                                              >  SRR4302547.2202826/1‑94 (MQ=60)

                 GGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGA                                                                              >  SRR4302547.766328/1‑94 (MQ=60)

                  GTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAA                                                                             <  SRR4302547.2597416/94‑1 (MQ=60)

                   TCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAAT                                                                            <  SRR4302547.4953654/94‑1 (MQ=60)

                    CATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATC                                                                           >  SRR4302547.6023376/1‑94 (MQ=60)

                    CATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATC                                                                           >  SRR4302547.6722992/1‑94 (MQ=60)

                     ATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCA                                                                          >  SRR4302547.3343121/1‑94 (MQ=60)

                     ATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCA                                                                          >  SRR4302547.5007640/1‑94 (MQ=60)

                     ATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCA                                                                          >  SRR4302547.6773988/1‑94 (MQ=60)

                     ATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCA                                                                          >  SRR4302547.2050647/1‑94 (MQ=60)

                      TCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAA                                                                         >  SRR4302547.3476193/1‑94 (MQ=60)

                       CACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAC                                                                        <  SRR4302547.635152/94‑1 (MQ=60)

                       CACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAAC                                                                        >  SRR4302547.5547429/1‑94 (MQ=60)

                        CCCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACC                                                                       <  SRR4302547.1600388/94‑1 (MQ=60)

                        ACCTGCGTGCTGATACGTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACC                                                                       <  SRR4302547.1074511/94‑1 (MQ=60)

                         CCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCG                                                                      <  SRR4302547.2173019/94‑1 (MQ=60)

                          CTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGT                                                                     <  SRR4302547.1668847/94‑1 (MQ=60)

                          CTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGT                                                                     <  SRR4302547.4300857/94‑1 (MQ=60)

                           TGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTA                                                                    <  SRR4302547.1765374/94‑1 (MQ=60)

                           TGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTA                                                                    <  SRR4302547.4459618/94‑1 (MQ=60)

                              GTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACG                                                                 <  SRR4302547.4536644/94‑1 (MQ=60)

                               TGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGA                                                                >  SRR4302547.2284119/1‑94 (MQ=60)

                               TGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGA                                                                <  SRR4302547.1248575/94‑1 (MQ=60)

                                 CGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACC                                                              >  SRR4302547.4714344/1‑94 (MQ=60)

                                 CGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACC                                                              <  SRR4302547.552364/94‑1 (MQ=60)

                                  tcATACTTTCCAGTTCGGCGTTGCACTGGCCGGAAATATGTGTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCG                                                             >  SRR4302547.937617/3‑94 (MQ=60)

                                    ATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGG                                                           >  SRR4302547.5825848/1‑94 (MQ=60)

                                         TTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGT                                                      <  SRR4302547.3931627/94‑1 (MQ=60)

                                          TCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTA                                                     <  SRR4302547.860346/94‑1 (MQ=60)

                                            CAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGT                                                   <  SRR4302547.2593039/94‑1 (MQ=60)

                                             AGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTC                                                  <  SRR4302547.3577467/94‑1 (MQ=60)

                                              GTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCT                                                 <  SRR4302547.4781691/94‑1 (MQ=60)

                                              GTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCT                                                 <  SRR4302547.1546736/94‑1 (MQ=60)

                                                TCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTC                                               >  SRR4302547.3093207/1‑94 (MQ=60)

                                                TCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTC                                               <  SRR4302547.667373/94‑1 (MQ=60)

                                                 CGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCT                                              <  SRR4302547.6188443/94‑1 (MQ=60)

                                                  GGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTG                                             >  SRR4302547.1472189/1‑94 (MQ=60)

                                                  GGCGTTGAACTGGCCGGAAATATGTTTAATAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTG                                             >  SRR4302547.4099034/1‑94 (MQ=60)

                                                    CGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTT                                           >  SRR4302547.3059780/1‑94 (MQ=60)

                                                    CGTTGAACTGGCAGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTTACGACCGGTGATGTAGTCTTCTGTT                                           >  SRR4302547.522122/1‑94 (MQ=60)

                                                     GTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          >  SRR4302547.4440753/1‑94 (MQ=60)

                                                     GTGGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTT                                          <  SRR4302547.2568293/94‑1 (MQ=60)

                                                      TTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATCACGCACTACTGAATCAACCGTAACGACCGGTGAGGTAGTCTTCTGTGTG                                         >  SRR4302547.3022789/1‑94 (MQ=60)

                                                      TTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTG                                         <  SRR4302547.755664/94‑1 (MQ=60)

                                                       TGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGT                                        >  SRR4302547.2610537/1‑94 (MQ=60)

                                                        GAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTT                                       >  SRR4302547.4246478/1‑94 (MQ=60)

                                                         AACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTT                                      >  SRR4302547.35335/1‑94 (MQ=60)

                                                         AACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTT                                      <  SRR4302547.3614154/94‑1 (MQ=60)

                                                          ACTGGCCGGAAATATGTTTATTAAGCTTGAGCCTGCCCATAACGCACTCCTGAATCAACCGTAACGAACGGTGATGTAGTCTTCTGTTTGTTTC                                     >  SRR4302547.1126181/1‑94 (MQ=60)

                                                          ACTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTC                                     <  SRR4302547.2369291/94‑1 (MQ=60)

                                                           CTGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCT                                    <  SRR4302547.2553144/94‑1 (MQ=60)

                                                            TGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTT                                   >  SRR4302547.6713669/1‑94 (MQ=60)

                                                            TGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTT                                   <  SRR4302547.5915920/94‑1 (MQ=60)

                                                            TGGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTT                                   >  SRR4302547.2859575/1‑94 (MQ=60)

                                                            TGGCCGAAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTT                                   <  SRR4302547.507857/94‑1 (MQ=60)

                                                             GGCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTC                                  <  SRR4302547.598500/94‑1 (MQ=60)

                                                              cgCGGAAATATCTTTATTACGAGTGAGGCTGCCCATAACGCACTCCTGACTCCACCGTACCGCCCGGTGATGTAGTCTTCTGTTTGTTTCTTCG                                 <  SRR4302547.1075673/92‑1 (MQ=49)

                                                              GCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCG                                 <  SRR4302547.6232474/94‑1 (MQ=60)

                                                              GCCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCG                                 <  SRR4302547.3386990/94‑1 (MQ=60)

                                                               CCGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGC                                >  SRR4302547.5691944/1‑94 (MQ=60)

                                                                CGGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               <  SRR4302547.2435218/94‑1 (MQ=60)

                                                                CGGAAAGATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCT                               >  SRR4302547.4414729/1‑94 (MQ=60)

                                                                 GGAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTG                              >  SRR4302547.4889282/1‑94 (MQ=60)

                                                                  GAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGG                             >  SRR4302547.4514700/1‑94 (MQ=60)

                                                                  GAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGG                             >  SRR4302547.2811453/1‑94 (MQ=60)

                                                                  GAAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGG                             >  SRR4302547.3288918/1‑94 (MQ=60)

                                                                   AAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGC                            >  SRR4302547.6243198/1‑94 (MQ=60)

                                                                   AAATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGC                            >  SRR4302547.1403917/1‑94 (MQ=60)

                                                                    AATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCT                           <  SRR4302547.2133198/94‑1 (MQ=60)

                                                                     ATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTT                          >  SRR4302547.1735573/1‑94 (MQ=60)

                                                                     ATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTT                          >  SRR4302547.2738668/1‑94 (MQ=60)

                                                                     ATATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTT                          >  SRR4302547.4564968/1‑94 (MQ=60)

                                                                      TATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTTTTTGTTTCTTAGCTGGCTTG                         <  SRR4302547.6633801/94‑1 (MQ=60)

                                                                      TATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTG                         >  SRR4302547.950313/1‑94 (MQ=60)

                                                                      TATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTG                         <  SRR4302547.3668706/94‑1 (MQ=60)

                                                                      TATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTG                         <  SRR4302547.3722197/94‑1 (MQ=60)

                                                                      TATGTTTATTAAGATTGAGACTACCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTG                         <  SRR4302547.870062/94‑1 (MQ=60)

                                                                      TATGTGTATTAAGATTGAGACTGCCCATACCGCACTCATGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTG                         <  SRR4302547.5078309/94‑1 (MQ=60)

                                                                       ATGTTTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGG                        <  SRR4302547.3018043/94‑1 (MQ=60)

                                                                           TTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAA                    >  SRR4302547.5805771/1‑94 (MQ=60)

                                                                           TTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAA                    >  SRR4302547.4859123/1‑94 (MQ=60)

                                                                           TTATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAA                    >  SRR4302547.414460/1‑94 (MQ=60)

                                                                            TATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTATTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAC                   >  SRR4302547.5732683/1‑94 (MQ=60)

                                                                            TATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAC                   >  SRR4302547.782498/1‑94 (MQ=60)

                                                                            TATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAAC                   >  SRR4302547.6011641/1‑94 (MQ=60)

                                                                             ATTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACA                  <  SRR4302547.81319/94‑1 (MQ=60)

                                                                              TTAAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAG                 <  SRR4302547.872823/94‑1 (MQ=60)

                                                                                AAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGAT               >  SRR4302547.3497707/1‑94 (MQ=60)

                                                                                AAGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGAT               <  SRR4302547.6241625/94‑1 (MQ=60)

                                                                                 AGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATC              <  SRR4302547.3634846/94‑1 (MQ=60)

                                                                                 AGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATC              >  SRR4302547.776616/1‑94 (MQ=60)

                                                                                 AGATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATC              <  SRR4302547.5466813/94‑1 (MQ=60)

                                                                                  GATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCG             >  SRR4302547.3513395/1‑94 (MQ=60)

                                                                                  GATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCG             >  SRR4302547.615801/1‑94 (MQ=60)

                                                                                  GATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCG             <  SRR4302547.1964841/94‑1 (MQ=60)

                                                                                  GATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCG             <  SRR4302547.378614/94‑1 (MQ=60)

                                                                                   ATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGT            >  SRR4302547.1994152/1‑94 (MQ=60)

                                                                                   ATTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGC            >  SRR4302547.4516712/1‑94 (MQ=60)

                                                                                    TTGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTC           <  SRR4302547.4316900/94‑1 (MQ=60)

                                                                                     TGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCC          <  SRR4302547.4099249/94‑1 (MQ=60)

                                                                                     TGAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCC          >  SRR4302547.3800590/1‑94 (MQ=60)

                                                                                     TGAGACTGCCCATAACGCACTCCTGAACCCACCGTAACGACCGGTGATGTAGCCTTCTGTTTGTGTCTTCGCTGGCTTGGTGAACAGATCGTCC          >  SRR4302547.1513569/1‑94 (MQ=60)

                                                                                      GAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGTCTTGGTGAACAGATCGTCCG         <  SRR4302547.6592815/94‑1 (MQ=60)

                                                                                      GAGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCG         >  SRR4302547.2890799/1‑94 (MQ=60)

                                                                                       AGACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGT        <  SRR4302547.3028500/94‑1 (MQ=60)

                                                                                        GACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTG       <  SRR4302547.3095572/94‑1 (MQ=60)

                                                                                         ACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGT      >  SRR4302547.2879923/1‑94 (MQ=60)

                                                                                         ACTGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGT      >  SRR4302547.5553915/1‑94 (MQ=60)

                                                                                           TGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTG    <  SRR4302547.2262145/94‑1 (MQ=60)

                                                                                           TGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTG    >  SRR4302547.6061071/1‑94 (MQ=60)

                                                                                           TGCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGCTG    >  SRR4302547.328410/1‑94 (MQ=60)

                                                                                            GCCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGC   >  SRR4302547.823900/1‑94 (MQ=60)

                                                                                             CCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  SRR4302547.2106664/1‑94 (MQ=60)

                                                                                             CCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  SRR4302547.1746690/1‑94 (MQ=60)

TCCACCATGCCGCCCATGGTCATCACCTGCGTGCGGATACTTTCCAGTTCGGCGTTGAACTGGCCGGAAATATGTTTATTAAGATTGAGACTGTCCATAACGCACTCCTGAATCAACCGTAACGACCGGTGATGTAGTCTTCTGTTTGTTTCTTCGCTGGCTTGGTGAACAGATCGTCCGTGTTGCT  >  NC_000913/3905109‑3905295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`