Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
3,938,587 |
+TGC |
coding (220/546 nt) |
yiePs ← |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3938584 | 0 (0.000) | 272 (1.200)
+TGC |
130/172 |
0.0 |
100% |
coding (223/546 nt) |
yiePs |
hypothetical protein |
| ? | NC_000913 |
3938585 = |
0 (0.000) | coding (222/546 nt) |
yiePs |
hypothetical protein |
Only 100 of 280 total aligned reads displayed.
ATCCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3938493‑3938584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGG > NC_000913/3938585‑3938676
|||
ATCCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTT > 1:696524/1‑93
ATCCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTT > 1:1772998/1‑93
TCCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTG > 2:4104729/1‑93
CCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGC < 1:4268322/93‑1
CAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATCGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCT > 1:2300358/1‑93
GCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC > 2:3746375/1‑93
GCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC > 1:3265566/1‑93
GTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCA > 1:5628390/1‑93
ACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAG > 1:5221767/1‑93
ACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAG < 1:6108369/93‑1
CGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAtg > 2:4289887/1‑91
GCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCA < 1:888354/93‑1
CGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAG > 2:3186852/1‑93
GAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGG < 1:3158533/93‑1
GAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGG < 1:1056064/93‑1
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGC < 2:4938631/93‑1
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGC < 2:2840336/93‑1
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGC < 1:2641454/93‑1
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCCGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGC > 1:491922/1‑93
AAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCT > 2:5922075/1‑93
AAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCT > 2:265461/1‑93
AGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTT > 1:3552161/1‑93
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAGCGTATTGAGATGCGCTTTCTGTTCAGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTG > 2:824500/1‑93
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTG > 2:1123592/1‑93
TTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGC > 1:2554841/1‑93
CTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGG < 2:5681442/93‑1
CTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGG < 2:3105133/93‑1
CTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGGGCCAAGCGTTGCTGCCAGTATGCAGGCTTTCGG > 1:1550585/1‑93
TCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGC > 1:1600122/1‑93
TTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCA > 2:2243416/1‑93
TTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTGTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCA < 1:4026214/93‑1
TAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCCACCGTTGCTGCCCGTCGGCAGGCTTGCGGCGCCcg > 2:3377997/1‑91
AATTCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGTGGTGCCAACCGTTGCTGCCAGTAGGCAGGCCTGCGGCGCCAGA > 1:5490297/1‑93
TGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACA > 1:487720/1‑93
GCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAG < 2:3943618/93‑1
GCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAG > 2:2777349/1‑93
GCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAG > 2:3262347/1‑93
CCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGA < 1:371766/93‑1
GCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATA < 1:2740846/93‑1
CATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACG > 2:5023129/1‑93
CATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACG > 2:3426285/1‑93
TTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCA > 1:4440107/1‑93
TCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATA < 2:237096/93‑1
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAA > 2:3218606/1‑93
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAA < 1:3940106/93‑1
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAA < 2:1956963/93‑1
GGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAAC > 1:3367594/1‑93
GCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACC > 2:4706834/1‑93
CCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCA > 1:5671762/1‑93
CATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAG > 1:995887/1‑93
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGA > 1:5027222/1‑93
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGA > 2:1362120/1‑93
TTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAA < 2:57665/93‑1
TAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAA < 2:5152014/93‑1
TAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAA < 1:5165635/93‑1
AACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAG < 1:3399976/93‑1
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGTCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGT > 1:2975949/1‑93
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGT < 1:3573268/93‑1
GTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGCAAGTGA > 2:2534799/1‑93
GTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGA < 2:5257713/93‑1
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT < 1:5737750/93‑1
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT < 2:1867996/93‑1
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT > 2:2061399/1‑93
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT > 2:4253024/1‑93
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT > 2:1745327/1‑93
ATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < 2:621065/93‑1
ATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCAT < 1:1488488/78‑1
ATTGAGATGCGCTTGCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < 2:3493835/93‑1
GAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGAT > 2:5534410/1‑93
GAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGAT < 2:3859243/93‑1
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA > 1:202630/1‑93
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA < 1:117041/93‑1
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA < 2:3125758/93‑1
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA < 1:4785401/93‑1
GCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCCGAAAGTGATCGATGACCTGA > 1:1916329/1‑93
GCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA > 2:3362183/1‑93
GCTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA > 1:4130874/1‑93
CTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGAT < 1:3092118/93‑1
CTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGAT < 2:4527834/93‑1
CTTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGAT < 1:5412630/93‑1
TTTCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATAAGCATAACCAGAAAGAGATCGATGACCCGATG > 1:4664010/1‑93
TCTGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAA > 2:1617266/1‑93
TGTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAG < 2:3007853/93‑1
GTTCCGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGACCGATGACCTGATGAAAGT < 2:5292945/93‑1
CGCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTt > 1:2811447/1‑92
GCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCT < 1:2337838/93‑1
GCGGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGGTCTCT > 2:1451410/1‑93
GGTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTC > 1:5532698/1‑93
GTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT < 2:591807/93‑1
GTGCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT > 2:910135/1‑93
GCCAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGT > 2:250052/1‑93
CAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCA < 2:4393922/93‑1
CAACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCA > 1:1742486/1‑93
ACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATC > 2:3549861/1‑93
ACCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATC > 2:2338928/1‑93
CCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCC < 2:4797539/93‑1
CCGTTGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCC > 2:3767981/1‑93
CGTGGCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCA < 2:504503/93‑1
GCTGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAG < 1:5925390/93‑1
CTGCCAGTAGGCAGGGTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGG < 1:1374368/93‑1
|||
ATCCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3938493‑3938584
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGG > NC_000913/3938585‑3938676
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAG > NC_000913/3938495‑3938680
|
CCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGC‑‑‑T > SRR4302532.4545620/1‑94 (MQ=60)
CCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGC‑‑‑T < SRR4302532.4412030/94‑1 (MQ=60)
CCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATCGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGC‑‑‑T > SRR4302532.2376800/1‑94 (MQ=60)
CAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtg > SRR4302532.3559711/1‑92 (MQ=60)
AGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgc > SRR4302532.3374175/1‑91 (MQ=60)
AGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgc > SRR4302532.3349814/1‑91 (MQ=60)
CGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgcca < SRR4302532.4169512/94‑6 (MQ=60)
CGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgcca > SRR4302532.5823731/1‑89 (MQ=60)
CGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGCATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgcca > SRR4302532.4351486/1‑89 (MQ=60)
GTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgccag > SRR4302532.1321559/1‑88 (MQ=60)
GTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgccag < SRR4302532.2620686/94‑7 (MQ=60)
TTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCTGCGGTGCCAACCGT‑‑‑TGCtgccagt < SRR4302532.2788707/94‑8 (MQ=60)
TTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgccagt > SRR4302532.6272314/1‑87 (MQ=60)
TTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCtgccagt < SRR4302532.199531/94‑8 (MQ=60)
CACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAG > SRR4302532.5401841/1‑94 (MQ=60)
CACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAG < SRR4302532.5854059/94‑1 (MQ=60)
CACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAG < SRR4302532.3252904/94‑1 (MQ=60)
ACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGG > SRR4302532.4775519/1‑94 (MQ=60)
ACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGG < SRR4302532.6319191/94‑1 (MQ=60)
CGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGC > SRR4302532.5699865/1‑94 (MQ=60)
GGCGAAAGTTCTCTTTTAATGTCGCCATTGCGGCCATTAACGTATTGAGATGCGCTTTCGGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCA < SRR4302532.3216835/94‑1 (MQ=60)
GGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCA < SRR4302532.5945726/94‑1 (MQ=60)
GCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAG < SRR4302532.918703/94‑1 (MQ=60)
GAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGC < SRR4302532.3263388/94‑1 (MQ=60)
GAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGC < SRR4302532.1091655/94‑1 (MQ=60)
GAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCCGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGC > SRR4302532.509108/1‑94 (MQ=60)
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCT > SRR4302532.1932697/1‑94 (MQ=60)
AAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCT < SRR4302532.2730035/94‑1 (MQ=60)
AAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTT > SRR4302532.3670999/1‑94 (MQ=60)
AAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTT > SRR4302532.3719480/1‑94 (MQ=60)
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGC < SRR4302532.2978178/94‑1 (MQ=60)
GTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGC > SRR4302532.2640053/1‑94 (MQ=60)
TTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCG > SRR4302532.5570842/1‑94 (MQ=60)
TTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCG > SRR4302532.2884275/1‑94 (MQ=60)
TTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCG < SRR4302532.4557049/94‑1 (MQ=60)
TTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTCCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCG < SRR4302532.5746874/94‑1 (MQ=60)
TCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGGGCCAAGCGTTGCTGC‑‑‑CAGTATGCAGGCTTTCGG > SRR4302532.1602998/1‑94 (MQ=60)
CTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGC > SRR4302532.1654284/1‑94 (MQ=60)
TCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCT > SRR4302532.3585299/1‑94 (MQ=60)
TTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCA < SRR4302532.537825/94‑1 (MQ=60)
TTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTGTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAG < SRR4302532.4161899/94‑1 (MQ=60)
TAATTCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGTGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCCTGCGGCGCCAGA > SRR4302532.5680690/1‑94 (MQ=60)
AATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGAC < SRR4302532.2803096/94‑1 (MQ=60)
AATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGAC < SRR4302532.4162478/94‑1 (MQ=60)
AATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGAC < SRR4302532.6346686/94‑1 (MQ=60)
ATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACA > SRR4302532.504750/1‑94 (MQ=60)
gtgctcattgcggccattatcgtatgtaggTGCGCTTTCTTTTCGGCGGTGCCACCCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGA < SRR4302532.2148947/64‑1 (MQ=40)
GCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGA > SRR4302532.703971/1‑94 (MQ=60)
CCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGAT < SRR4302532.384681/94‑1 (MQ=60)
GCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATAC < SRR4302532.2832936/94‑1 (MQ=60)
CCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACG > SRR4302532.1388306/1‑94 (MQ=60)
ATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCA > SRR4302532.84186/1‑94 (MQ=60)
ATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCA > SRR4302532.4591409/1‑94 (MQ=60)
ATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCA > SRR4302532.1025157/1‑94 (MQ=60)
ccgatcttcgggatTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATA < SRR4302532.1538714/80‑1 (MQ=60)
CGGCCATTTACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAAC > SRR4302532.5642938/1‑94 (MQ=60)
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCTGGCTTGCGGCTCCAGACAGATACGCATAAC > SRR4302532.3480173/1‑94 (MQ=60)
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAAC > SRR4302532.5611031/1‑94 (MQ=60)
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAAC > SRR4302532.3480174/1‑94 (MQ=60)
CGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAAC < SRR4302532.4072878/94‑1 (MQ=60)
GCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCA > SRR4302532.5869601/1‑94 (MQ=60)
CCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAG > SRR4302532.5529903/1‑94 (MQ=60)
CCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAG > SRR4302532.1029839/1‑94 (MQ=60)
CCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATAAGCATAACCAG > SRR4302532.4034622/1‑94 (MQ=60)
CATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGA > SRR4302532.5199653/1‑94 (MQ=60)
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAA < SRR4302532.3498906/94‑1 (MQ=60)
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAA > SRR4302532.1993272/1‑94 (MQ=60)
ATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAA > SRR4302532.6168473/1‑94 (MQ=60)
TAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAG < SRR4302532.5343476/94‑1 (MQ=60)
AACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGT < SRR4302532.3513812/94‑1 (MQ=60)
AACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGT < SRR4302532.5258970/94‑1 (MQ=60)
AACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGCTGTCAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGT > SRR4302532.3074413/1‑94 (MQ=60)
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGTCTTGCGTCTCCAGACAGATACGCATAACCAGAAAGTG < SRR4302532.317535/94‑1 (MQ=60)
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTG < SRR4302532.3692840/94‑1 (MQ=60)
ACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTG < SRR4302532.3692682/94‑1 (MQ=60)
GTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGAT > SRR4302532.6055272/1‑94 (MQ=60)
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < SRR4302532.3471703/94‑1 (MQ=60)
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < SRR4302532.2880701/94‑1 (MQ=60)
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < SRR4302532.5937514/94‑1 (MQ=60)
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC < SRR4302532.3282112/94‑1 (MQ=60)
TATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATC > SRR4302532.3691701/1‑94 (MQ=60)
ATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCG < SRR4302532.5093056/94‑1 (MQ=60)
ATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCG > SRR4302532.4158346/1‑94 (MQ=60)
TTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGA > SRR4302532.1574324/1‑94 (MQ=60)
AGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA < SRR4302532.150101/94‑1 (MQ=60)
AGATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA > SRR4302532.209537/1‑94 (MQ=60)
AGATGCGCTGTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGA < SRR4302532.1770334/94‑1 (MQ=60)
AGACGCGCTTTCTGATCAGCGGTGTCAGCCGTTGGTGC‑‑‑CAGTAGGCTGGCTTGCGGCTCCAGACAGATAAGCATAACCAGAAAGcgcgcgattg > SRR4302532.4231034/1‑84 (MQ=35)
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGAC < SRR4302532.4950183/94‑1 (MQ=60)
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGAC < SRR4302532.121057/94‑1 (MQ=60)
GATGCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTACAGACAGATAAGCATAACCAGAAAGTGATCGATGAC > SRR4302532.4287203/1‑94 (MQ=60)
GCGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTG < SRR4302532.1626353/94‑1 (MQ=60)
CGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCCGAAAGTGATCGATGACCTGA > SRR4302532.1980052/1‑94 (MQ=60)
CGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA > SRR4302532.2394115/1‑94 (MQ=60)
CGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA > SRR4302532.1980050/1‑94 (MQ=60)
CGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA > SRR4302532.5029201/1‑94 (MQ=60)
CGCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGA > SRR4302532.4269463/1‑94 (MQ=60)
GCTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACGGATATGCATAACCAGAAAATGATCGAatgactgat > SRR4302532.3809848/1‑85 (MQ=60)
GCTTTCTGTTCCGCGGGGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGGCAGATACGCATAATCAGAAAGGGATCGATGTCCTAAT > SRR4302532.1956910/1‑94 (MQ=60)
CTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATG < SRR4302532.3194600/94‑1 (MQ=60)
CTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATG < SRR4302532.5600160/94‑1 (MQ=60)
CTTTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATAAGCATAACCAGAAAGAGATCGATGACCCGATG > SRR4302532.4823024/1‑94 (MQ=60)
TTCTGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAA < SRR4302532.1605181/94‑1 (MQ=60)
CTGTTCCGCGTTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAG < SRR4302532.3814686/94‑1 (MQ=60)
TGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGT < SRR4302532.2611235/94‑1 (MQ=60)
TGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGT > SRR4302532.4826166/1‑94 (MQ=60)
TGTTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGT < SRR4302532.5910109/94‑1 (MQ=60)
TTCCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTC < SRR4302532.5316691/94‑1 (MQ=60)
CCGGGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTC < SRR4302532.1490048/94‑1 (MQ=60)
CCGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTT > SRR4302532.2905575/1‑94 (MQ=60)
CGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCT < SRR4302532.5731852/94‑1 (MQ=60)
CGCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCT > SRR4302532.1804970/1‑94 (MQ=60)
GCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTT < SRR4302532.2415729/94‑1 (MQ=60)
GCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTT < SRR4302532.2643972/94‑1 (MQ=60)
GCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTT > SRR4302532.5708722/1‑94 (MQ=60)
GCGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATAGATGACCTGATGAAAGTTCTCTT < SRR4302532.4671153/94‑1 (MQ=60)
CGGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTC > SRR4302532.5724687/1‑94 (MQ=60)
GGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT > SRR4302532.946125/1‑94 (MQ=60)
GGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT < SRR4302532.4042426/94‑1 (MQ=60)
GGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT < SRR4302532.1832048/94‑1 (MQ=60)
GGTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT > SRR4302532.5108958/1‑94 (MQ=60)
GGGGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCT < SRR4302532.5077228/94‑1 (MQ=60)
GTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTT > SRR4302532.5061358/1‑94 (MQ=60)
GTGCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTG > SRR4302532.1584846/1‑94 (MQ=60)
GCCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTC < SRR4302532.2303184/94‑1 (MQ=60)
CCAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCA > SRR4302532.1801115/1‑94 (MQ=60)
CAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCAT < SRR4302532.5912898/94‑1 (MQ=60)
CAACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCAT > SRR4302532.1193414/1‑94 (MQ=60)
AACCGTTGCTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATC > SRR4302532.2720557/1‑94 (MQ=60)
GC‑‑‑TGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGG < SRR4302532.6130567/94‑1 (MQ=60)
ttgcTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCA > SRR4302532.4953707/5‑94 (MQ=60)
C‑‑‑TGC‑‑‑CAGTAGGCAGGGTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGT < SRR4302532.1420417/94‑1 (MQ=60)
tgcTGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAG < SRR4302532.2223810/91‑1 (MQ=60)
GC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAA > SRR4302532.6141605/1‑94 (MQ=60)
C‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTTTCATCCACCAGGTAAG < SRR4302532.3239817/94‑1 (MQ=60)
C‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAG < SRR4302532.3525285/94‑1 (MQ=60)
|
CCAGCGTTCACGGCGAAAGTTCTCTTTTAATGCCGCCATTTCGGCCATTAACGTATTGAGATGCGCTTTCTGTTCCGCGGTGCCAACCGT‑‑‑TGC‑‑‑CAGTAGGCAGGCTTGCGGCTCCAGACAGATACGCATAACCAGAAAGTGATCGATGACCTGATGAAAGTTCTCTTCTGTCATCCACCAGGTAAG > NC_000913/3938495‑3938680
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
