Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,959,281 |
G→A |
E330E (GAG→GAA) |
rep → |
rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,959,281 | 0 | G | A | 99.5%
| 799.3
/ ‑5.0
| 218 | E330E (GAG→GAA) | rep | rep helicase |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (112/104); total (113/105) |
| Fisher's exact test for biased strand distribution p-value = 4.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.51e-01 |
Only 100 of 221 total aligned reads displayed.
GCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAA > NC_000913/3959191‑3959370
|
gTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGa > 1:477603/1‑93 (MQ=255)
tCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAt > 1:2544758/1‑93 (MQ=255)
tCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAt < 2:3540831/93‑1 (MQ=255)
tCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAt > 1:3514747/1‑93 (MQ=255)
tCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAt > 1:2528838/1‑93 (MQ=255)
cTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATc > 2:4459604/1‑93 (MQ=255)
gTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGc > 1:947240/1‑93 (MQ=255)
gTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGc > 1:4885507/1‑93 (MQ=255)
ttCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGcc > 1:2928046/1‑93 (MQ=255)
ctcCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCa > 2:1089190/1‑93 (MQ=255)
ccGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATc > 2:3431735/1‑93 (MQ=255)
gAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCAc > 1:3078695/1‑93 (MQ=255)
aCTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACtt > 1:5105157/1‑93 (MQ=255)
cTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTc > 2:2513834/1‑93 (MQ=255)
cTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTc > 2:566319/1‑93 (MQ=255)
gggTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGt > 1:3043888/1‑93 (MQ=255)
gTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCa > 1:5999390/1‑93 (MQ=255)
ttATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCaa < 2:5867940/93‑1 (MQ=255)
ttATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCaa < 1:463899/93‑1 (MQ=255)
ttATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCaa < 1:4877585/93‑1 (MQ=255)
aTGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATa < 1:5563972/93‑1 (MQ=255)
aTGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATa > 1:4467734/1‑93 (MQ=255)
aTGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATa < 2:5900178/93‑1 (MQ=255)
gcgcGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATaaaa > 1:1037537/1‑93 (MQ=255)
gcgcGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATaaaa < 2:624090/93‑1 (MQ=255)
gcgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACg > 2:319306/1‑93 (MQ=255)
cgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGc < 2:1764367/93‑1 (MQ=255)
cgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGc < 2:3624879/93‑1 (MQ=255)
cgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGc > 1:3102720/1‑93 (MQ=255)
ggAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCa < 1:3837008/93‑1 (MQ=255)
ggAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCa > 1:1964978/1‑93 (MQ=255)
gAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAg < 2:2131001/93‑1 (MQ=255)
gAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAg < 2:3978443/93‑1 (MQ=255)
gAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAg > 1:4751568/1‑93 (MQ=255)
gAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAg < 2:5043216/93‑1 (MQ=255)
gAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAg < 1:482350/93‑1 (MQ=255)
cTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTAc > 1:773437/1‑93 (MQ=255)
cTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTAc < 2:3444080/93‑1 (MQ=255)
cTAAAAGAATTAAGCGCGAATAACGAAGAACATGAGGCTGAGGGCGTTAATGGCGAACTGATGCCCCATCACTTCGTCAATAAAACGCAgcaa > 2:800717/1‑90 (MQ=255)
aaaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACaaa > 1:4390450/1‑93 (MQ=255)
aaaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACaaa > 2:4042052/1‑93 (MQ=255)
aaaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACaaa < 1:5577308/93‑1 (MQ=255)
aaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAg > 1:6102937/1‑93 (MQ=255)
aaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATAACTTCGTCAATAAAACGCAGTACaaaa > 2:1529083/1‑92 (MQ=255)
atcaTTGAGCGCGGATAGCGCAGTGCATGCGTCTGTGCGCGTTACTGGCAAACTGATCGCCCATCACTTCCTCAATAAAACGCAGTACAAAgc < 2:597851/90‑2 (MQ=255)
aGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGa < 2:305991/93‑1 (MQ=255)
aGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGa < 1:4509227/93‑1 (MQ=255)
aGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGa > 2:5285495/1‑93 (MQ=255)
gTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAt > 1:1059270/1‑93 (MQ=255)
tATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACCAAGAtt > 2:1346169/1‑93 (MQ=255)
tATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAtt > 1:677663/1‑93 (MQ=255)
tATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAtt > 2:208659/1‑93 (MQ=255)
tATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAtt < 1:5064109/93‑1 (MQ=255)
aTTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTa < 2:931703/93‑1 (MQ=255)
aTTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTa > 1:5234186/1‑93 (MQ=255)
ttAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAc < 2:614465/93‑1 (MQ=255)
ttAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAc < 1:1930576/93‑1 (MQ=255)
aGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGcc > 1:5790405/1‑93 (MQ=255)
cgAATAACGACGAACATGAGGCTGACCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTc < 1:2570518/93‑1 (MQ=255)
cgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCAttt > 2:4258213/1‑92 (MQ=255)
cgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTc < 1:4613198/93‑1 (MQ=255)
aaTAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCtt < 1:4132438/93‑1 (MQ=255)
aTAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCttt < 1:5914247/93‑1 (MQ=255)
tAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTa < 1:5397594/93‑1 (MQ=255)
aaCGAAGAACATGAGGCTGAGCGCGTTACTGGCCAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAt < 1:5935652/93‑1 (MQ=255)
gaagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgc > 2:2656834/1‑93 (MQ=255)
aagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgcg > 2:282422/1‑93 (MQ=255)
aagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgcg < 2:2177350/93‑1 (MQ=255)
aagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgcg < 1:2666532/93‑1 (MQ=255)
aagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgcg < 2:2459970/93‑1 (MQ=255)
agaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCgg > 2:4817365/1‑93 (MQ=255)
agaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTAACAAGATTACGCCATTCTTTATCGCgg > 2:3733857/1‑93 (MQ=255)
gaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGt < 2:1451426/93‑1 (MQ=255)
aCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTaa > 2:2102552/1‑93 (MQ=255)
cATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAc > 2:2382915/1‑93 (MQ=255)
cATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAc > 1:4093706/1‑93 (MQ=255)
aTGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAcc < 1:442862/93‑1 (MQ=255)
aTGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAcc < 2:3598109/93‑1 (MQ=255)
tGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCa > 2:4107612/1‑93 (MQ=255)
gAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCAt < 2:4214893/93‑1 (MQ=255)
gCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAg < 1:1818019/93‑1 (MQ=255)
cTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGt < 1:4704098/93‑1 (MQ=255)
cTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGt > 2:5754171/1‑93 (MQ=255)
cTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGt < 1:3456434/93‑1 (MQ=255)
tGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTc > 2:3124887/1‑93 (MQ=255)
gAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTcg > 1:5055877/1‑93 (MQ=255)
aGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTcgc > 1:1231497/1‑93 (MQ=255)
gcgcGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTCACCAACAGTcgcg > 1:1707953/1‑93 (MQ=255)
gcgcGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTcgcg > 2:5534956/1‑93 (MQ=255)
gcgcGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTcgcg > 1:1518182/1‑93 (MQ=255)
cgcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCgg < 1:1337902/93‑1 (MQ=255)
gcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCggg < 2:3774748/93‑1 (MQ=255)
gTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgtg > 2:1006375/1‑93 (MQ=255)
ttACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgtgt > 2:595764/1‑93 (MQ=255)
ttACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgtgt > 2:2245058/1‑93 (MQ=255)
aCTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGttt < 2:4723633/93‑1 (MQ=255)
aCTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGttt > 2:6049859/1‑93 (MQ=255)
tGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGa > 2:4646822/1‑93 (MQ=255)
ggCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGaa > 1:2288396/1‑93 (MQ=255)
cGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGaaaa < 1:2086246/93‑1 (MQ=255)
|
GCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAA > NC_000913/3959191‑3959370
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > NC_000913/3959188‑3959374
|
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAA > SRR4302532.2595731/1‑94 (MQ=60)
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAA > SRR4302532.6170600/1‑94 (MQ=60)
AAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAAC < SRR4302532.3368644/94‑1 (MQ=60)
AGCGTCTGTCCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACT < SRR4302532.5437106/94‑1 (MQ=60)
GCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTG < SRR4302532.4770647/94‑1 (MQ=60)
CGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGA > SRR4302532.494257/1‑94 (MQ=60)
GTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT > SRR4302532.3632426/1‑94 (MQ=60)
GTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT > SRR4302532.388267/1‑94 (MQ=60)
GTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT > SRR4302532.2629632/1‑94 (MQ=60)
GTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT > SRR4302532.2613222/1‑94 (MQ=60)
CTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCG < SRR4302532.3625238/94‑1 (MQ=60)
TGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGC > SRR4302532.979647/1‑94 (MQ=60)
TGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGC > SRR4302532.4412109/1‑94 (MQ=60)
TGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGC > SRR4302532.5053446/1‑94 (MQ=60)
GTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCC > SRR4302532.3025447/1‑94 (MQ=60)
TTCTCCGGACTGGGATATGGCGCGGAGCTAAAAGTATTAAGAGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTAGCGAACTGATCACCC > SRR4302532.4468214/1‑94 (MQ=60)
CGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCAC > SRR4302532.3180440/1‑94 (MQ=60)
CGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCAC > SRR4302532.4246671/1‑94 (MQ=60)
CGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCAC > SRR4302532.1375488/1‑94 (MQ=60)
GAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACT < SRR4302532.62958/94‑1 (MQ=60)
AACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTT > SRR4302532.5280663/1‑94 (MQ=60)
ACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTC > SRR4302532.2145917/1‑94 (MQ=60)
TGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGT > SRR4302532.3144338/1‑94 (MQ=60)
GGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCA > SRR4302532.6206595/1‑94 (MQ=60)
TTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAAT < SRR4302532.4563281/94‑1 (MQ=60)
TTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAAT < SRR4302532.480054/94‑1 (MQ=60)
TTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAAT < SRR4302532.5045282/94‑1 (MQ=60)
TATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCTCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATA < SRR4302532.299061/94‑1 (MQ=60)
TATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATA > SRR4302532.4620054/1‑94 (MQ=60)
ATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAA < SRR4302532.5292137/94‑1 (MQ=60)
ATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAA < SRR4302532.5757166/94‑1 (MQ=60)
GGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAA > SRR4302532.1072538/1‑94 (MQ=60)
GCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAAC < SRR4302532.1776559/94‑1 (MQ=60)
GCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGC > SRR4302532.3205619/1‑94 (MQ=60)
CGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCA > SRR4302532.2030244/1‑94 (MQ=60)
CGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCA > SRR4302532.5058759/1‑94 (MQ=60)
GGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAG > SRR4302532.1630754/1‑94 (MQ=60)
GGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAG > SRR4302532.4914028/1‑94 (MQ=60)
GGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAG < SRR4302532.3966553/94‑1 (MQ=60)
GGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAG < SRR4302532.4792693/94‑1 (MQ=60)
GAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGT < SRR4302532.499180/94‑1 (MQ=60)
GAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGT > SRR4302532.1886272/1‑94 (MQ=60)
AGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGACCATCACTTCGTCAATAAAACGCAGTA > SRR4302532.1492037/1‑94 (MQ=60)
GCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTAC > SRR4302532.2515579/1‑94 (MQ=60)
GCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTAC > SRR4302532.800101/1‑94 (MQ=60)
GCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTAC > SRR4302532.800103/1‑94 (MQ=60)
CTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACA > SRR4302532.5965553/1‑94 (MQ=60)
AAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAA > SRR4302532.4539718/1‑94 (MQ=60)
AAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAG < SRR4302532.5770944/94‑1 (MQ=60)
AAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAG > SRR4302532.6313544/1‑94 (MQ=60)
AGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAT < SRR4302532.4663187/94‑1 (MQ=60)
AGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAT < SRR4302532.6075667/94‑1 (MQ=60)
AGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAT > SRR4302532.1094961/1‑94 (MQ=60)
GTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATT > SRR4302532.700970/1‑94 (MQ=60)
GTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATT > SRR4302532.5244696/1‑94 (MQ=60)
GTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATT < SRR4302532.5047273/94‑1 (MQ=60)
TATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTA < SRR4302532.5987934/94‑1 (MQ=60)
TATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTA < SRR4302532.5238005/94‑1 (MQ=60)
TATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTA > SRR4302532.5414682/1‑94 (MQ=60)
ATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCGATAAAACGCAGTACAAAGATTAC > SRR4302532.4640626/1‑94 (MQ=60)
ATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAC > SRR4302532.5292609/1‑94 (MQ=60)
ATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAC < SRR4302532.523958/94‑1 (MQ=60)
ATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAC < SRR4302532.3583579/94‑1 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG < SRR4302532.2771238/94‑1 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG < SRR4302532.1994833/94‑1 (MQ=60)
AAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCC > SRR4302532.5991730/1‑94 (MQ=60)
CGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAACGATTACCCCATT > SRR4302532.3348816/1‑94 (MQ=60)
CGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATT > SRR4302532.1744035/1‑94 (MQ=60)
CGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATT < SRR4302532.6340383/94‑1 (MQ=60)
CGAATAACGACGAACATGAGGCTGACCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT < SRR4302532.2656341/94‑1 (MQ=60)
CGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT < SRR4302532.4770500/94‑1 (MQ=60)
CAAATAACGAAGAGAGTGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT < SRR4302532.2656340/94‑1 (MQ=60)
GAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTT > SRR4302532.4997965/1‑94 (MQ=60)
AATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTT < SRR4302532.4271072/94‑1 (MQ=60)
ATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTA < SRR4302532.6119046/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302532.2322533/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302532.5584615/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302532.4823465/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302532.6134134/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302532.2260169/94‑1 (MQ=60)
AACGAAGAACATGAGGCTGAGCGCGTTACTGGCCAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATC < SRR4302532.6141069/94‑1 (MQ=60)
GAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCG < SRR4302532.557866/94‑1 (MQ=60)
AAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGG < SRR4302532.2756034/94‑1 (MQ=60)
AAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGG < SRR4302532.2667764/94‑1 (MQ=60)
AAGAACATGAGGCCGAGCGCGTTACTGGCGAACTGATCGCCCAGCACTTCGTCAACAAAACGCAGTACAAAGATTACGCCATCCACTATCGCGG > SRR4302532.5679448/1‑94 (MQ=60)
AGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGT > SRR4302532.4724527/1‑94 (MQ=60)
ACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAC > SRR4302532.4231135/1‑94 (MQ=60)
ACATGAGGCTGAGCGCGTTACTGGCGAACTGATAGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTCAC > SRR4302532.49054/1‑94 (MQ=60)
CATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACC > SRR4302532.932670/1‑94 (MQ=60)
ATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCA < SRR4302532.458179/94‑1 (MQ=60)
ATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCA < SRR4302532.1237227/94‑1 (MQ=60)
AGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCA < SRR4302532.2014315/94‑1 (MQ=60)
GGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAG < SRR4302532.1090615/94‑1 (MQ=60)
GGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCCTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAG < SRR4302532.4507610/94‑1 (MQ=60)
GCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGT < SRR4302532.1878622/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTGAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC < SRR4302532.3181193/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC < SRR4302532.5024185/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC < SRR4302532.3572184/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC < SRR4302532.4864587/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC > SRR4302532.3030481/1‑94 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAACATCAGTC > SRR4302532.6164205/1‑94 (MQ=60)
TGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCG > SRR4302532.5229403/1‑94 (MQ=60)
GAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGC > SRR4302532.1272700/1‑94 (MQ=60)
GAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGC > SRR4302532.3157629/1‑94 (MQ=60)
AGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTCACCAACAGTCGCG > SRR4302532.1765532/1‑94 (MQ=60)
AGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCG > SRR4302532.1569458/1‑94 (MQ=60)
CGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGG < SRR4302532.1382642/94‑1 (MQ=60)
CGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGG > SRR4302532.2623427/1‑94 (MQ=60)
GCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGT < SRR4302532.2650669/94‑1 (MQ=60)
CGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTG < SRR4302532.992304/94‑1 (MQ=60)
CGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTG > SRR4302532.3393430/1‑94 (MQ=60)
CGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTG < SRR4302532.695436/94‑1 (MQ=60)
GTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGGGT > SRR4302532.417464/1‑94 (MQ=60)
TTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTT > SRR4302532.4984905/1‑94 (MQ=60)
ACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAGCGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTG < SRR4302532.5765249/94‑1 (MQ=60)
CTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGA < SRR4302532.4592557/94‑1 (MQ=60)
TGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAA > SRR4302532.2364344/1‑94 (MQ=60)
GGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAA < SRR4302532.4930678/94‑1 (MQ=60)
CGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGTAAAA > SRR4302532.4397187/1‑94 (MQ=60)
CGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAA < SRR4302532.2155809/94‑1 (MQ=60)
GAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAAT < SRR4302532.825972/94‑1 (MQ=60)
GAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAAT < SRR4302532.1031691/94‑1 (MQ=60)
ACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > SRR4302532.5167408/1‑94 (MQ=60)
ACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > SRR4302532.3049246/1‑94 (MQ=60)
|
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > NC_000913/3959188‑3959374
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
