Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,959,281 |
G→A |
E330E (GAG→GAA) |
rep → |
rep helicase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,959,281 | 0 | G | A | 100.0%
| 1008.8
/ NA
| 264 | E330E (GAG→GAA) | rep | rep helicase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (125/139); total (125/139) |
Only 100 of 270 total aligned reads displayed.
GCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAA > NC_000913/3959191‑3959370
|
gTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGa > 1:3483114/1‑93 (MQ=255)
gTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGa < 2:4944818/93‑1 (MQ=255)
gTCTGTTCTCCGAACT‑GGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAt > 1:5621969/1‑93 (MQ=255)
cTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGATCGCGTTACTGGCGAACTGATc < 1:1382250/93‑1 (MQ=255)
tGTTCTCCGAACTGGGTTATGGAGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCg < 2:2365329/93‑1 (MQ=255)
gTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGc > 1:2301003/1‑93 (MQ=255)
ttCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGcc < 2:1546960/93‑1 (MQ=255)
tctcCGAACTCGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGccc > 1:2556689/1‑93 (MQ=255)
ctcCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCa > 2:3377308/1‑93 (MQ=255)
ccGTACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATc < 2:3836521/93‑1 (MQ=255)
ccGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGGGCGTTACTGGCGAACTGATCGCCCATc > 1:1699661/1‑93 (MQ=255)
ccGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATc < 2:362819/93‑1 (MQ=255)
aaCTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACt > 1:732272/1‑93 (MQ=255)
cTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGATCGCGTTACTGGCGAACTGATCGCCCATCACTTc < 1:976966/93‑1 (MQ=255)
cTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTc < 1:1113879/93‑1 (MQ=255)
cTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTc < 2:525440/93‑1 (MQ=255)
gggTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGt < 1:5222293/93‑1 (MQ=255)
gTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCa > 1:338996/1‑93 (MQ=255)
ttATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCaa < 2:623591/93‑1 (MQ=255)
aTGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATa < 2:2136308/93‑1 (MQ=255)
aTGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATa > 2:3244256/1‑93 (MQ=255)
ggCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATaaa > 2:1256435/1‑93 (MQ=255)
cgcgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAAc < 1:5003244/93‑1 (MQ=255)
cgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGc < 1:5827308/93‑1 (MQ=255)
cgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGc < 2:1905321/93‑1 (MQ=255)
cgGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGc > 2:6502323/1‑93 (MQ=255)
ggAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCa < 2:6215583/93‑1 (MQ=255)
ggAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCa < 2:2275838/93‑1 (MQ=255)
ggAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCa > 1:2819533/1‑93 (MQ=255)
gAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAg < 2:1817768/93‑1 (MQ=255)
aGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGt > 1:6019600/1‑93 (MQ=255)
aGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGt < 2:16877/93‑1 (MQ=255)
aGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGt > 2:943026/1‑93 (MQ=255)
gCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTa < 2:2565421/93‑1 (MQ=255)
tAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACa > 2:6331655/1‑93 (MQ=255)
tAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACa > 2:6018880/1‑93 (MQ=255)
tAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACa > 1:1293273/1‑93 (MQ=255)
aaaaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACaa < 1:4357060/93‑1 (MQ=255)
aaaaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACaa > 2:4299110/1‑93 (MQ=255)
aaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAg < 1:3191294/93‑1 (MQ=255)
aaGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAg > 2:737684/1‑93 (MQ=255)
aGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGa < 1:6354241/93‑1 (MQ=255)
gTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAt > 1:1201219/1‑93 (MQ=255)
gTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAt < 2:4178647/93‑1 (MQ=255)
gTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAt > 2:5650834/1‑93 (MQ=255)
gTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAt < 1:2069068/93‑1 (MQ=255)
tATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAtt > 1:6283492/1‑93 (MQ=255)
tATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAtt < 1:863495/93‑1 (MQ=255)
aTTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTa > 2:4489131/1‑93 (MQ=255)
ttAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAc < 1:1569520/93‑1 (MQ=255)
tAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGTCCATCACTTAGTCAATAAAACGCAGTACAAAGATTACg > 2:2864056/1‑93 (MQ=255)
tAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACg > 1:6087997/1‑93 (MQ=255)
gcgcGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCa > 1:2992064/1‑93 (MQ=255)
gcgcGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCa > 1:3741561/1‑93 (MQ=255)
gcgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCAtt < 1:6222907/93‑1 (MQ=255)
gcgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCAtt < 2:2201535/93‑1 (MQ=255)
ccgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCAtt < 1:5799978/92‑1 (MQ=255)
cgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTc < 1:1422038/93‑1 (MQ=255)
cgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTc < 2:3535362/93‑1 (MQ=255)
cgAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTc < 2:3181692/93‑1 (MQ=255)
gAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCt > 1:2694092/1‑93 (MQ=255)
gAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCt < 2:1600470/93‑1 (MQ=255)
aaTAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCtt < 1:2516127/93‑1 (MQ=255)
aaTAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCtt < 2:2998844/93‑1 (MQ=255)
aaTAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCtt > 2:3293338/1‑93 (MQ=255)
tAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTa < 2:5415447/93‑1 (MQ=255)
tAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTa > 1:2949637/1‑93 (MQ=255)
aaCGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAt > 2:6486905/1‑93 (MQ=255)
aaCGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAt > 2:1051032/1‑93 (MQ=255)
cGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcg < 2:5134096/93‑1 (MQ=255)
gaagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgc < 1:6546901/93‑1 (MQ=255)
gaagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgc < 2:4086592/93‑1 (MQ=255)
aagaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATcgcg > 2:4000156/1‑93 (MQ=255)
gaaCATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGt > 1:1667608/1‑93 (MQ=255)
cATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAc < 1:5715935/93‑1 (MQ=255)
aTGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAcc > 2:3064637/1‑93 (MQ=255)
tGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCa > 1:4147884/1‑93 (MQ=255)
aGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATc > 1:4027489/1‑93 (MQ=255)
aGGCTGAGCGCGTTACTGGCGAACTGATAGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATc > 1:2246034/1‑93 (MQ=255)
ggCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCa > 1:4814400/1‑93 (MQ=255)
ggCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCa < 1:1985338/93‑1 (MQ=255)
cTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGt < 1:503497/93‑1 (MQ=255)
cTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGt < 1:5306815/93‑1 (MQ=255)
tGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTc > 1:5169028/1‑93 (MQ=255)
gAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTcg > 1:3681876/1‑93 (MQ=255)
aGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTcgc > 1:3908920/1‑93 (MQ=255)
cgcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCgg < 2:4767039/93‑1 (MQ=255)
cgcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCgg < 2:1298003/93‑1 (MQ=255)
cgcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCgg < 1:2043030/93‑1 (MQ=255)
gcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCggg < 2:4353990/93‑1 (MQ=255)
gcgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCggg < 1:3593010/93‑1 (MQ=255)
cgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgt > 2:4860640/1‑93 (MQ=255)
cgTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgt > 1:3203424/1‑93 (MQ=255)
gTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATGAGTCGCGGatg > 1:5492106/1‑93 (MQ=255)
gTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgtg > 2:5816164/1‑93 (MQ=255)
gTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgtg > 1:2023931/1‑93 (MQ=255)
tACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGgtggt > 2:3898716/1‑91 (MQ=255)
aCTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGttt < 2:4781180/93‑1 (MQ=255)
tGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGa > 2:2293504/1‑93 (MQ=255)
tGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGa > 1:1913052/1‑93 (MQ=255)
|
GCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAA > NC_000913/3959191‑3959370
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > NC_000913/3959188‑3959374
|
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAA > SRR4302547.1600320/1‑94 (MQ=60)
AAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAAC > SRR4302547.2974048/1‑94 (MQ=60)
AAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAAC < SRR4302547.1228566/94‑1 (MQ=60)
AAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAAC < SRR4302547.3281637/94‑1 (MQ=60)
AGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACT < SRR4302547.2107790/94‑1 (MQ=60)
AGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACT < SRR4302547.818298/94‑1 (MQ=60)
AGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACT > SRR4302547.4032432/1‑94 (MQ=60)
CGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGA > SRR4302547.3554168/1‑94 (MQ=60)
CGTCTGTTCTCCGAACT‑GGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT > SRR4302547.5737992/1‑94 (MQ=60)
GTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT < SRR4302547.3626774/94‑1 (MQ=60)
GTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGAT > SRR4302547.3855359/1‑94 (MQ=60)
TCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATC < SRR4302547.1253489/94‑1 (MQ=60)
TCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATC < SRR4302547.4189279/94‑1 (MQ=60)
TCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATC < SRR4302547.5996225/94‑1 (MQ=60)
CTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGATCGCGTTACTGGCGAACTGATCG < SRR4302547.1409942/94‑1 (MQ=60)
CTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCG < SRR4302547.5143384/94‑1 (MQ=60)
CTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCG < SRR4302547.725702/94‑1 (MQ=60)
TGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGC > SRR4302547.2347632/1‑94 (MQ=60)
TGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGC < SRR4302547.5607308/94‑1 (MQ=60)
TTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCC < SRR4302547.6511883/94‑1 (MQ=60)
TTCTCCGAACTCGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCC > SRR4302547.2608318/1‑94 (MQ=60)
TCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTTGCGACCTGATCGCCCA > SRR4302547.1748972/1‑94 (MQ=60)
TCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCA < SRR4302547.998315/94‑1 (MQ=60)
TCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCA > SRR4302547.5527339/1‑94 (MQ=60)
CTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGTCGAACTGATCGCCCAT < SRR4302547.375649/94‑1 (MQ=60)
TCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGGGCGTTACTGGCGAACTGATCGCCCATC > SRR4302547.1733068/1‑94 (MQ=60)
TCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATC < SRR4302547.4163686/94‑1 (MQ=60)
CCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCA > SRR4302547.3265831/1‑94 (MQ=60)
GAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACT < SRR4302547.3023164/94‑1 (MQ=60)
GAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACT > SRR4302547.745948/1‑94 (MQ=60)
AACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTT < SRR4302547.1954113/94‑1 (MQ=60)
CTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGATCGCGTTACTGGCGAACTGATCGCCCATCACTTCG < SRR4302547.995966/94‑1 (MQ=60)
CTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCG < SRR4302547.1136310/94‑1 (MQ=60)
CTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCG < SRR4302547.2254947/94‑1 (MQ=60)
CTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGCTACTGGCGAACTGATCGCCCATCACTTCG > SRR4302547.5414290/1‑94 (MQ=60)
GGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTC < SRR4302547.5329755/94‑1 (MQ=60)
GGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCA < SRR4302547.5446180/94‑1 (MQ=60)
GGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCA > SRR4302547.345300/1‑94 (MQ=60)
GGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCA < SRR4302547.471861/94‑1 (MQ=60)
GTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAA > SRR4302547.143583/1‑94 (MQ=60)
TTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAAT > SRR4302547.2061107/1‑94 (MQ=60)
TATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATA > SRR4302547.780230/1‑94 (MQ=60)
ATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAA > SRR4302547.6243266/1‑94 (MQ=60)
GGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAA > SRR4302547.1709172/1‑94 (MQ=60)
GGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAA > SRR4302547.6255653/1‑94 (MQ=60)
CGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACG < SRR4302547.5106659/94‑1 (MQ=60)
CGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACG < SRR4302547.4103688/94‑1 (MQ=60)
CGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACG > SRR4302547.1959133/1‑94 (MQ=60)
CGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCA < SRR4302547.5947903/94‑1 (MQ=60)
CGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCA > SRR4302547.2875936/1‑94 (MQ=60)
GGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAG > SRR4302547.2082545/1‑94 (MQ=60)
GGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAG > SRR4302547.5932349/1‑94 (MQ=60)
GAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGT > SRR4302547.6144531/1‑94 (MQ=60)
GAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACGGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGT < SRR4302547.2575508/94‑1 (MQ=60)
AGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTA > SRR4302547.727794/1‑94 (MQ=60)
AGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTA > SRR4302547.5034575/1‑94 (MQ=60)
CTACAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTAGCGAACTGATCGCACATCACTTACTCAATAAAACGCAGGACA > SRR4302547.2471645/1‑94 (MQ=60)
CTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACA > SRR4302547.3711011/1‑94 (MQ=60)
CTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACA > SRR4302547.1319300/1‑94 (MQ=60)
AAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAA < SRR4302547.4446557/94‑1 (MQ=60)
AAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAA < SRR4302547.2084708/94‑1 (MQ=60)
AAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAA > SRR4302547.5799649/1‑94 (MQ=60)
AAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGA < SRR4302547.3254884/94‑1 (MQ=60)
AGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAT > SRR4302547.2366250/1‑94 (MQ=60)
AGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAT > SRR4302547.1225467/1‑94 (MQ=60)
AGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGAT < SRR4302547.6486693/94‑1 (MQ=60)
GTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATT < SRR4302547.2110357/94‑1 (MQ=60)
GTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATT > SRR4302547.6414038/1‑94 (MQ=60)
GTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATT > SRR4302547.635700/1‑94 (MQ=60)
TATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTA < SRR4302547.880008/94‑1 (MQ=60)
ATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAC < SRR4302547.5995689/94‑1 (MQ=60)
ATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTAC > SRR4302547.6552422/1‑94 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG < SRR4302547.513195/94‑1 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG < SRR4302547.5840300/94‑1 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG > SRR4302547.6214288/1‑94 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG < SRR4302547.1600778/94‑1 (MQ=60)
TTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACG < SRR4302547.3141002/94‑1 (MQ=60)
AGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCA > SRR4302547.3817943/1‑94 (MQ=60)
AGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCA > SRR4302547.3051584/1‑94 (MQ=60)
GCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCAT < SRR4302547.4234009/94‑1 (MQ=60)
CGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATT < SRR4302547.567591/94‑1 (MQ=60)
GCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTC < SRR4302547.6352141/94‑1 (MQ=60)
CCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTC < SRR4302547.5919966/94‑1 (MQ=60)
CGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT > SRR4302547.2748180/1‑94 (MQ=60)
CGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT < SRR4302547.896318/94‑1 (MQ=60)
CGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT > SRR4302547.2250320/1‑94 (MQ=60)
CGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCT < SRR4302547.1450514/94‑1 (MQ=60)
GAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTT > SRR4302547.1582133/1‑94 (MQ=60)
AATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTT < SRR4302547.2566995/94‑1 (MQ=60)
ATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTA > SRR4302547.3008376/1‑94 (MQ=60)
ATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTA > SRR4302547.1667639/1‑94 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302547.6388154/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302547.6181267/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302547.202963/94‑1 (MQ=60)
TAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTAT < SRR4302547.3745048/94‑1 (MQ=60)
AACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATC < SRR4302547.4905418/94‑1 (MQ=60)
AACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATC < SRR4302547.2810218/94‑1 (MQ=60)
GAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCG < SRR4302547.186600/94‑1 (MQ=60)
GAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCG < SRR4302547.6683156/94‑1 (MQ=60)
GAAGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCG < SRR4302547.255920/94‑1 (MQ=60)
AGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGT > SRR4302547.1700481/1‑94 (MQ=60)
AGAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGT < SRR4302547.3274409/94‑1 (MQ=60)
GAACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTA > SRR4302547.2605870/1‑94 (MQ=60)
AACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAGACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAA > SRR4302547.3832899/1‑94 (MQ=60)
AACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAA > SRR4302547.326897/1‑94 (MQ=60)
ACATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAAC > SRR4302547.5279713/1‑94 (MQ=60)
CATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACC < SRR4302547.5833981/94‑1 (MQ=60)
CATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACC < SRR4302547.3497186/94‑1 (MQ=60)
ATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCA > SRR4302547.4232352/1‑94 (MQ=60)
ATGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCA < SRR4302547.362126/94‑1 (MQ=60)
TGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCAT < SRR4302547.3033169/94‑1 (MQ=60)
TGAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCAT > SRR4302547.645501/1‑94 (MQ=60)
GAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATC > SRR4302547.4109311/1‑94 (MQ=60)
GAGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATC > SRR4302547.3265652/1‑94 (MQ=60)
GAGGCTGAGCGCGTTACTGGCGAACTGATCGCCAATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTACCCCTC > SRR4302547.1362928/1‑94 (MQ=60)
GAGGCTGAGCGCGTTACTGGCGAACTGATAGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATC > SRR4302547.2291350/1‑94 (MQ=60)
AGGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCA > SRR4302547.4914175/1‑94 (MQ=60)
GGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAG < SRR4302547.2024760/94‑1 (MQ=60)
GGCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAG > SRR4302547.1639988/1‑94 (MQ=60)
GCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGT < SRR4302547.2900802/94‑1 (MQ=60)
GCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGT < SRR4302547.2876293/94‑1 (MQ=60)
GCTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGT < SRR4302547.841365/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC > SRR4302547.5275461/1‑94 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC < SRR4302547.5416276/94‑1 (MQ=60)
CTGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTC < SRR4302547.512660/94‑1 (MQ=60)
TGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCG > SRR4302547.1364165/1‑94 (MQ=60)
TGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCG > SRR4302547.3757042/1‑94 (MQ=60)
TGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCG > SRR4302547.1566242/1‑94 (MQ=60)
TGAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCG > SRR4302547.5922068/1‑94 (MQ=60)
GAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTCCAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTAGC > SRR4302547.2103742/1‑94 (MQ=60)
GAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGC < SRR4302547.5293488/94‑1 (MQ=60)
GAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGC < SRR4302547.5108260/94‑1 (MQ=60)
GAGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGC > SRR4302547.3988417/1‑94 (MQ=60)
AGCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCG > SRR4302547.5058982/1‑94 (MQ=60)
GCGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGG < SRR4302547.2651838/94‑1 (MQ=60)
CGCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGG < SRR4302547.2083784/94‑1 (MQ=60)
GCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGT < SRR4302547.1211902/94‑1 (MQ=60)
GCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGT > SRR4302547.3267310/1‑94 (MQ=60)
GCGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGT < SRR4302547.3666294/94‑1 (MQ=60)
CGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATGAGTCGCGGATG > SRR4302547.5605509/1‑94 (MQ=60)
CGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTG > SRR4302547.2064238/1‑94 (MQ=60)
CGTTACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTG < SRR4302547.1295643/94‑1 (MQ=60)
TACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTT < SRR4302547.2322616/94‑1 (MQ=60)
TACTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGGAACCCTCAGTCGCGGGggttg > SRR4302547.3968673/1‑89 (MQ=60)
CTGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGA > SRR4302547.1950905/1‑94 (MQ=60)
TGGCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAA > SRR4302547.2873838/1‑94 (MQ=60)
GCGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAA > SRR4302547.5757248/1‑94 (MQ=60)
CGAACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAA > SRR4302547.5796911/1‑94 (MQ=60)
AACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATT > SRR4302547.2823260/1‑94 (MQ=60)
ACTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > SRR4302547.6053106/1‑94 (MQ=60)
|
AAAGCGTCTGTTCTCCGAACTGGGTTATGGCGCGGAGCTAAAAGTATTAAGCGCGAATAACGAAGAACATGAGGCTGAGCGCGTTACTGGCGAGCTGATCGCCCATCACTTCGTCAATAAAACGCAGTACAAAGATTACGCCATTCTTTATCGCGGTAACCATCAGTCGCGGGTGTTTGAAAAATTC > NC_000913/3959188‑3959374
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
