Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,007,907 |
+GG |
intergenic (+109/‑11) |
pldB → / → b4555 |
lysophospholipase L(2)/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,007,907 | 1 | . | G | 92.2%
| 733.2
/ 49.2
| 218 | intergenic (+109/‑11) | pldB/b4555 | lysophospholipase L(2)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (7/10); new base G (98/103); total (105/113) |
| Fisher's exact test for biased strand distribution p-value = 6.19e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
| * | NC_000913 | 4,007,907 | 2 | . | G | 92.2%
| 720.3
/ 49.2
| 218 | intergenic (+109/‑11) | pldB/b4555 | lysophospholipase L(2)/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (7/10); new base G (97/103); total (105/113) |
| Fisher's exact test for biased strand distribution p-value = 6.20e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01 |
Only 100 of 241 total aligned reads displayed.
GTTGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GC‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACC > NC_000913/4007815‑4007995
||
gttgttGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCg‑‑c‑‑g‑‑c‑‑gc > 2:2852694/1‑93 (MQ=255)
ttgttgCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCg‑‑c‑‑g‑‑c‑‑gcg > 2:5355088/1‑92 (MQ=255)
ttgttgCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCg‑‑c‑‑g‑‑c‑‑gcg < 2:5382382/93‑2 (MQ=255)
ttgCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCg‑‑c‑‑g‑‑c‑‑gcggca < 1:2409349/93‑5 (MQ=255)
ttgCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCg‑‑c‑‑g‑‑c‑‑gcggca > 2:5628778/1‑89 (MQ=255)
cTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACt > 1:5650964/1‑93 (MQ=255)
cTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACt > 1:2729426/1‑93 (MQ=255)
tGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACtt > 2:4326864/1‑93 (MQ=255)
tGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACtt > 1:4770032/1‑93 (MQ=255)
gATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACttt < 2:1008892/93‑1 (MQ=255)
tttAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTtgt > 1:2507896/1‑93 (MQ=255)
tttAGATGGCACGTTAATTTCTCCCGAGCATACGTTATCACCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTtgg > 1:1517712/1‑92 (MQ=255)
tAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTgtgt < 2:2680729/93‑1 (MQ=255)
tAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTgtgt > 2:4567741/1‑93 (MQ=255)
tAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTgtgt < 2:3092772/93‑1 (MQ=255)
aGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGtt > 2:705389/1‑93 (MQ=255)
gATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGttt > 1:1930036/1‑93 (MQ=255)
aTGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTg < 1:687378/93‑1 (MQ=255)
aTGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTg < 1:5307627/93‑1 (MQ=255)
tGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGc > 2:5198404/1‑93 (MQ=255)
gCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGa < 1:5043115/93‑1 (MQ=255)
cACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGAc < 2:569028/93‑1 (MQ=255)
cGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCg > 1:5443982/1‑93 (MQ=255)
cGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCg < 2:545551/93‑1 (MQ=255)
gTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCgg > 1:345489/1‑93 (MQ=255)
gTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCgg > 1:1433611/1‑93 (MQ=255)
ttACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGgt < 1:6062132/93‑1 (MQ=255)
tACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGgtc > 1:5031950/1‑93 (MQ=255)
aCTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGgtcg > 1:1013704/1‑93 (MQ=255)
cTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGgtcgt < 2:2237971/93‑1 (MQ=255)
cTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGgtcgt < 1:3768692/93‑1 (MQ=255)
tttCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGgtcgtc > 2:3369756/1‑93 (MQ=255)
tttCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGACATCAACTTTGTGTTTGCGACCGgtcgtc > 1:5392803/1‑93 (MQ=255)
ttCTCCCGACCATACGTTTTCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTca > 1:2887989/1‑93 (MQ=255)
tctcCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTcac < 2:2296746/93‑1 (MQ=255)
tcCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCGCCC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTcaccg > 2:1491889/1‑92 (MQ=255)
cccGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTcaccac < 2:2111790/93‑1 (MQ=255)
ccGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACg < 2:4767832/93‑1 (MQ=255)
cGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTAGTGTTTGCGACCGGGCGTCACCACGt > 1:5489590/1‑93 (MQ=255)
gACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGtt < 1:4930589/93‑1 (MQ=255)
gACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGtt > 1:1204093/1‑93 (MQ=255)
aCCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTg > 2:1653441/1‑93 (MQ=255)
ccATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGa < 1:4343567/93‑1 (MQ=255)
ccATACGTTATCCACTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑CGGGG‑‑CATCAACTTTGTGTCTGCGACCGGTCGTCACCACGTTGa < 1:460414/93‑1 (MQ=255)
cGTTATCCCATTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTgg < 2:4175267/93‑1 (MQ=255)
gTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTggg < 1:2992981/93‑1 (MQ=255)
ttATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTgggg > 2:2582432/1‑93 (MQ=255)
ttATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTgggg > 2:3864478/1‑93 (MQ=255)
tATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGc > 1:1161352/1‑93 (MQ=255)
aTCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCa > 2:4783699/1‑93 (MQ=255)
tCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCaa > 2:409587/1‑93 (MQ=255)
ccccTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGaaaa > 1:3222974/1‑93 (MQ=255)
ccccTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCaaa < 2:5557182/93‑1 (MQ=255)
ccccTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCaaa < 2:4941312/93‑1 (MQ=255)
ccccTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCaaa < 2:836463/93‑1 (MQ=255)
cccTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAAt < 1:2100006/93‑1 (MQ=255)
cTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTc > 1:3671966/1‑93 (MQ=255)
tACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTcgc < 1:4652842/93‑1 (MQ=255)
tACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTcgc < 1:5968217/93‑1 (MQ=255)
cGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGa < 2:160920/93‑1 (MQ=255)
gCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGAt < 2:3740822/93‑1 (MQ=255)
ccAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATa > 1:3477861/1‑93 (MQ=255)
cAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATaa < 2:1078968/93‑1 (MQ=255)
cAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATaa > 1:788575/1‑93 (MQ=255)
cAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATaa < 2:382801/93‑1 (MQ=255)
aaaGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAAt > 1:583053/1‑93 (MQ=255)
aaGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATc > 2:1706846/1‑93 (MQ=255)
aGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCt < 2:3933317/93‑1 (MQ=255)
gAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTg > 1:5229002/1‑93 (MQ=255)
gAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTg < 1:5907996/93‑1 (MQ=255)
aaaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTgg < 1:1549342/93‑1 (MQ=255)
aaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGga > 2:3284101/1‑93 (MQ=255)
aaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGga < 2:2044645/93‑1 (MQ=255)
aaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGga < 1:4536281/93‑1 (MQ=255)
aaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGga < 2:105218/93‑1 (MQ=255)
aaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGga > 1:5347294/1‑93 (MQ=255)
aaCTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGga > 2:3302979/1‑93 (MQ=255)
tctGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGAt > 1:5081484/1‑93 (MQ=255)
tGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTa < 1:4083431/93‑1 (MQ=255)
gAAGCTGCTCACCG‑‑C‑‑GCAC‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTaa < 1:5475936/93‑1 (MQ=255)
gAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTaa < 2:3234756/93‑1 (MQ=255)
aaGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAg < 1:2554444/93‑1 (MQ=255)
aGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGCTAATCTGGAGATTAAGt > 2:1310580/1‑93 (MQ=255)
aGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGt < 2:4639733/93‑1 (MQ=255)
aGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAAATCGCGATAATCTGGAGATTAAGt > 1:4301358/1‑93 (MQ=255)
aGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTGTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGt < 2:5950835/93‑1 (MQ=255)
gctgctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTc > 2:769262/1‑93 (MQ=255)
gctgctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTc > 2:5270429/1‑93 (MQ=255)
gctgctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTc < 2:143704/93‑1 (MQ=255)
ctgctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGCTTAAGTCt > 2:1563447/1‑93 (MQ=255)
ctgctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCt < 1:1001325/93‑1 (MQ=255)
tgctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCtt > 2:4821017/1‑93 (MQ=255)
gctCACCG‑‑CGGG‑‑C‑‑GG‑‑CATCAAATTTGTGTTTGCGACCGGTAGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTa > 1:1086467/1‑93 (MQ=255)
gctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTa < 2:5422841/93‑1 (MQ=255)
gctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTa < 1:3326616/93‑1 (MQ=255)
gctCACCG‑‑C‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTa < 2:2599361/93‑1 (MQ=255)
accgcg‑‑c‑‑g‑‑c‑‑gG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATg < 1:3083372/89‑1 (MQ=255)
ccgcg‑‑c‑‑g‑‑c‑‑gG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGa < 2:697684/90‑1 (MQ=255)
cg‑‑c‑‑g‑‑c‑‑gG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTa < 1:2816241/93‑1 (MQ=255)
g‑‑c‑‑g‑‑c‑‑gg‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGTTTAc > 2:1880644/1‑93 (MQ=255)
||
GTTGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCACCG‑‑C‑‑G‑‑C‑‑GC‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACC > NC_000913/4007815‑4007995
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGTTGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GC‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACCTCCA > NC_000913/4007814‑4007999
|
GGTTGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GC < SRR4302532.3874898/94‑1 (MQ=60)
TGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCggc > SRR4302532.5928727/1‑91 (MQ=60)
TGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCggc > SRR4302532.5840149/1‑91 (MQ=60)
GTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCggca < SRR4302532.3016953/94‑5 (MQ=60)
TTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCggcat < SRR4302532.2489511/94‑6 (MQ=60)
TTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCggcac > SRR4302532.3949980/1‑89 (MQ=60)
CGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAA > SRR4302532.5762909/1‑94 (MQ=60)
GTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAAC > SRR4302532.303580/1‑94 (MQ=60)
GTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAAC > SRR4302532.1302597/1‑94 (MQ=60)
TCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACT > SRR4302532.2821200/1‑94 (MQ=60)
TCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACT > SRR4302532.5847609/1‑94 (MQ=60)
CTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTT > SRR4302532.4933845/1‑94 (MQ=60)
TGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTT > SRR4302532.3470723/1‑94 (MQ=60)
TGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTT > SRR4302532.3332712/1‑94 (MQ=60)
GATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTG > SRR4302532.6298996/1‑94 (MQ=60)
ATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGT > SRR4302532.2591553/1‑94 (MQ=60)
ATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTAAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGT > SRR4302532.1568972/1‑94 (MQ=60)
ATTTAGATGGCACGTTAATTTCTCCCGAGCATACGTTATCACCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGG > SRR4302532.1568971/1‑94 (MQ=60)
TTTTGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTATGTG > SRR4302532.5678828/1‑94 (MQ=60)
TTTAGATGGCCCGTTCCTTTCTCCCGACCATACGTTATCCCTTTCCGCAAAAGAACCTCTG‑AGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGT < SRR4302532.2763139/94‑1 (MQ=48)
TTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTG > SRR4302532.2709209/1‑94 (MQ=60)
TTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGT < SRR4302532.3675091/94‑1 (MQ=60)
TAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTT < SRR4302532.206222/94‑1 (MQ=60)
AGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTT > SRR4302532.1994269/1‑94 (MQ=60)
GATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTG < SRR4302532.4659089/94‑1 (MQ=60)
GATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTG < SRR4302532.5150703/94‑1 (MQ=60)
ATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGC < SRR4302532.710949/94‑1 (MQ=60)
ATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGC < SRR4302532.1054507/94‑1 (MQ=60)
ATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGC < SRR4302532.5491133/94‑1 (MQ=60)
GCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGAC < SRR4302532.5216118/94‑1 (MQ=60)
ACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCG > SRR4302532.297481/1‑94 (MQ=60)
ACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCG > SRR4302532.5632647/1‑94 (MQ=60)
ACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCG > SRR4302532.5557423/1‑94 (MQ=60)
CGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGG < SRR4302532.6263066/94‑1 (MQ=60)
CGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGG > SRR4302532.357450/1‑94 (MQ=60)
CGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGG > SRR4302532.1481882/1‑94 (MQ=60)
TTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTC < SRR4302532.6271461/94‑1 (MQ=60)
TTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTC > SRR4302532.5204536/1‑94 (MQ=60)
TACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCG > SRR4302532.5272563/1‑94 (MQ=60)
TACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCG < SRR4302532.954420/94‑1 (MQ=60)
TACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCG > SRR4302532.1048132/1‑94 (MQ=60)
ACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGT > SRR4302532.772526/1‑94 (MQ=60)
CTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTC < SRR4302532.3895526/94‑1 (MQ=60)
CTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTC > SRR4302532.4769939/1‑94 (MQ=60)
CTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTC > SRR4302532.5508329/1‑94 (MQ=60)
CTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGACATCAACTTTGTGTTTGCGACCGGTCGTC > SRR4302532.5579642/1‑94 (MQ=60)
TTTCTCCCGACCATACGTTTTCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCA > SRR4302532.2984479/1‑94 (MQ=60)
TTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGATCGGTCGGCA > SRR4302532.5662965/1‑94 (MQ=60)
TTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCA < SRR4302532.5526676/94‑1 (MQ=60)
CCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACG < SRR4302532.5722618/94‑1 (MQ=60)
CCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACG > SRR4302532.1785103/1‑94 (MQ=60)
CCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTAGTGTTTGCGACCGGGCGTCACCACGT > SRR4302532.5679956/1‑94 (MQ=60)
CGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTT > SRR4302532.2950922/1‑94 (MQ=60)
CGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTT > SRR4302532.1244379/1‑94 (MQ=60)
GACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTG < SRR4302532.5099899/94‑1 (MQ=60)
gcagACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGAT < SRR4302532.4490294/90‑1 (MQ=60)
CCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGAT < SRR4302532.4490295/94‑1 (MQ=60)
CCATACGTTATCCACTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑CGGGG‑‑CATCAACTTTGTGTCTGCGACCGGTCGTCACCACGTTGAT < SRR4302532.476435/94‑1 (MQ=60)
CATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATG > SRR4302532.5641105/1‑94 (MQ=60)
CATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATG > SRR4302532.5193744/1‑94 (MQ=60)
ATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGT < SRR4302532.1047430/94‑1 (MQ=60)
ATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGT < SRR4302532.5230060/94‑1 (MQ=60)
ATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGT > SRR4302532.6072232/1‑94 (MQ=60)
ATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGT > SRR4302532.4241023/1‑94 (MQ=60)
ATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGT > SRR4302532.4241022/1‑94 (MQ=60)
ATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGT > SRR4302532.119109/1‑94 (MQ=60)
ACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGG < SRR4302532.5616273/94‑1 (MQ=60)
ACGTTAACCCCTTACGCCAAAGGAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGGGTTTGCGACCGGTCGTCACCACGTTGATGTGG < SRR4302532.5208809/94‑1 (MQ=60)
CGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGG < SRR4302532.6360063/94‑1 (MQ=60)
CGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGG < SRR4302532.1396924/94‑1 (MQ=60)
CGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGG < SRR4302532.2199775/94‑1 (MQ=60)
CGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGG > SRR4302532.1159310/1‑94 (MQ=60)
GTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGG < SRR4302532.3091874/94‑1 (MQ=60)
TTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGC > SRR4302532.1200151/1‑94 (MQ=60)
TCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGAAAA > SRR4302532.3329974/1‑94 (MQ=60)
CCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAAT < SRR4302532.3657630/94‑1 (MQ=60)
CCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATT < SRR4302532.2170070/94‑1 (MQ=60)
CCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTC > SRR4302532.3795321/1‑94 (MQ=60)
CCTTACGCCAAAGAAACTCTGAAGCCGCTCGC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGATTGCGCCCGGTCGTCACCACGTTGATGTGGGGCAAATTC < SRR4302532.4940344/94‑1 (MQ=60)
TACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCG < SRR4302532.6174562/94‑1 (MQ=60)
TACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCG < SRR4302532.4811477/94‑1 (MQ=60)
CGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGAT < SRR4302532.4726819/94‑1 (MQ=60)
CGCCAAAGAAACTCTCAAGCTGCTCACAGCGC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCCGTCGTCACCACGATGATGTGGGGCAAAATCGCGAT > SRR4302532.6092657/1‑94 (MQ=60)
GCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATA > SRR4302532.3594353/1‑94 (MQ=60)
GCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATA > SRR4302532.3191959/1‑94 (MQ=60)
GCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGAGTTTGCGACCGGTCGTCACCACGTTGATGTGAGGCAAATTCGCGATA > SRR4302532.3594352/1‑94 (MQ=60)
CCAAAGATACTCTGAAGCTGCTCACTTCGC‑‑G‑‑C‑‑TG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAA < SRR4302532.613678/94‑1 (MQ=60)
CCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAA > SRR4302532.815617/1‑94 (MQ=60)
CAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACGGGTCGTCACCACGTTGATGTGGGGTAAATTCGCGATAAT > SRR4302532.5470951/1‑94 (MQ=60)
CAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAAT > SRR4302532.603382/1‑94 (MQ=60)
AGAAACTCTGAAGCTGCTCAG‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTG < SRR4302532.4146325/94‑1 (MQ=60)
AGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTG > SRR4302532.5409335/1‑94 (MQ=60)
GAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGG > SRR4302532.1017144/1‑94 (MQ=60)
GAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGG < SRR4302532.6112589/94‑1 (MQ=60)
GAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGG < SRR4302532.5088610/94‑1 (MQ=60)
AAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGA < SRR4302532.1601693/94‑1 (MQ=60)
AAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGA > SRR4302532.2526532/1‑94 (MQ=60)
AAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGA > SRR4302532.5532818/1‑94 (MQ=60)
ATCTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAG < SRR4302532.3266879/94‑1 (MQ=60)
AACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAG < SRR4302532.4691120/94‑1 (MQ=60)
ACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGA > SRR4302532.1482057/1‑94 (MQ=60)
CTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGAT > SRR4302532.5256202/1‑94 (MQ=60)
TCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATT < SRR4302532.3872495/94‑1 (MQ=60)
TGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAA < SRR4302532.4220524/94‑1 (MQ=60)
TGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAA < SRR4302532.4909432/94‑1 (MQ=60)
GAAGCTGCTCAC‑‑CGC‑‑GCAC‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAG < SRR4302532.5665805/94‑1 (MQ=60)
AAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGT < SRR4302532.2639646/94‑1 (MQ=60)
AAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGT < SRR4302532.1236094/94‑1 (MQ=60)
AAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAAATCGCGATAATCTGGAGATTAAGT > SRR4302532.4446739/1‑94 (MQ=60)
CTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTT < SRR4302532.1035411/94‑1 (MQ=60)
CTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTT > SRR4302532.1392090/1‑94 (MQ=60)
CTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTT > SRR4302532.1979662/1‑94 (MQ=60)
CTGCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTT > SRR4302532.2903618/1‑94 (MQ=60)
TGCTCAC‑‑CGCGGG‑‑C‑‑GG‑‑CATCAAATTTGTGTTTGCGACCGGTAGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTA > SRR4302532.1122857/1‑94 (MQ=60)
GCTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTAC < SRR4302532.3437545/94‑1 (MQ=60)
CTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTTGAGATTAAGTCTTACA > SRR4302532.1114910/1‑94 (MQ=60)
CTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACA < SRR4302532.5933456/94‑1 (MQ=60)
CTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACA > SRR4302532.1351169/1‑94 (MQ=60)
CTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACA < SRR4302532.250462/94‑1 (MQ=60)
CTCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGGTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACA < SRR4302532.3947234/94‑1 (MQ=60)
TCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACAT < SRR4302532.926425/94‑1 (MQ=60)
TCAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACAT < SRR4302532.4019774/94‑1 (MQ=60)
CAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATG > SRR4302532.4920891/1‑94 (MQ=60)
CAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATG < SRR4302532.2914990/94‑1 (MQ=60)
CAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATG < SRR4302532.1947159/94‑1 (MQ=60)
CAC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATG > SRR4302532.244629/1‑94 (MQ=60)
cccgCGC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGA < SRR4302532.5277678/90‑1 (MQ=60)
AC‑‑CGC‑‑G‑‑C‑‑GCGGCATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGA < SRR4302532.3185372/94‑1 (MQ=60)
CGC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTAC < SRR4302532.3566905/94‑1 (MQ=60)
CGC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTAC < SRR4302532.2910505/94‑1 (MQ=60)
GC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACC < SRR4302532.2591586/94‑1 (MQ=60)
GC‑‑G‑‑C‑‑GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACC < SRR4302532.3138381/94‑1 (MQ=60)
GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACCTCCA < SRR4302532.6113654/94‑1 (MQ=60)
GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACCTCCA > SRR4302532.1532630/1‑94 (MQ=60)
GG‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACCTCCA > SRR4302532.3035736/1‑94 (MQ=60)
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GGTTGTTGCGTCTGATTTAGATGGCACGTTACTTTCTCCCGACCATACGTTATCCCCTTACGCCAAAGAAACTCTGAAGCTGCTCAC‑‑CGC‑‑G‑‑C‑‑GC‑‑CATCAACTTTGTGTTTGCGACCGGTCGTCACCACGTTGATGTGGGGCAAATTCGCGATAATCTGGAGATTAAGTCTTACATGATTACCTCCA > NC_000913/4007814‑4007999
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
