Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,469 |
+G |
intergenic (+36/‑197) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,466 | 1 | . | G | 99.2%
| 439.5
/ ‑3.5
| 122 | intergenic (+33/‑200) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (62/59); total (63/59) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01 |
Only 100 of 124 total aligned reads displayed.
ACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGAAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008400‑4008551
|
ctgtgCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc < 1:382962/89‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc < 1:3063491/90‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc < 1:383176/90‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc > 1:5705746/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc < 2:3723597/90‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGc > 2:4734852/4‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa > 1:919547/3‑93 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCa > 1:3351464/3‑93 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAg < 2:3709804/92‑1 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGt < 1:1253718/93‑1 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTg > 1:5812512/1‑93 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTg > 1:5812511/1‑93 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTg < 2:3612738/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTgc > 1:5478868/1‑92 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTgcg > 1:3730112/1‑91 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCgcacc > 1:791574/3‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCC‑GGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:4251499/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAgg > 1:4227871/1‑92 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc < 1:66123/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc < 1:66125/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:3585612/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:956820/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGGGCgcaccacc > 2:750975/1‑91 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 2:1296504/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 1:5755649/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg < 1:1641550/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg < 2:4859662/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc < 2:4767506/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc > 2:1235294/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTc > 2:4079945/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 2:2915928/93‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 2:1727595/89‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:704227/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 1:1618191/91‑1 (MQ=255)
ggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATccc > 1:3588741/2‑93 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 2:5240537/1‑93 (MQ=255)
ggACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa < 2:2313950/92‑1 (MQ=255)
gACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg > 2:2100642/1‑93 (MQ=255)
gcGGGAGGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc < 1:838114/92‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc < 2:3468199/93‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc > 2:1601140/1‑93 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt < 2:5184845/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 2:586952/1‑93 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 1:3757978/1‑93 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg < 2:5056962/93‑2 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 2:1862944/1‑92 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGcggga > 1:2704025/1‑89 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:2900952/1‑91 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 1:5895954/1‑91 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:3647649/1‑91 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaa < 1:4396292/93‑4 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag < 2:1949765/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag < 2:2234078/93‑5 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg < 1:3115706/93‑1 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg > 2:264074/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 1:632002/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 1:6046519/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 2:3514420/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa < 2:5551018/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:3436527/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:1384626/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 1:5366060/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg > 2:5156872/1‑93 (MQ=255)
cgCCGAAATGCTGTAGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg > 2:3286360/1‑93 (MQ=255)
ccGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa < 2:3808357/93‑1 (MQ=255)
cGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc < 1:3296422/93‑1 (MQ=255)
gAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGGAGTGATTGGTACt > 2:2659482/1‑93 (MQ=255)
gAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:1276274/1‑93 (MQ=255)
gAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:5539366/1‑93 (MQ=255)
gAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:4442388/1‑93 (MQ=255)
aaaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa > 2:5876015/1‑93 (MQ=255)
aaaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGATGGAAGTGATTGGTACTa < 1:265504/93‑1 (MQ=255)
agtGCGGTCGATGG‑CGGGGAAAGGCTGCATTAGGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 1:1881282/91‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 1:3216533/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 2:4648038/1‑93 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 1:5666223/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 2:421874/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 2:421873/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 2:1327626/1‑93 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa < 2:2880811/93‑1 (MQ=255)
tGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg > 2:4451836/1‑93 (MQ=255)
tGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg > 1:1075907/1‑93 (MQ=255)
cTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:4431194/93‑1 (MQ=255)
cTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc > 1:3893941/1‑93 (MQ=255)
cTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc > 2:326993/1‑93 (MQ=255)
tGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:110057/1‑93 (MQ=255)
tGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 2:4618886/1‑93 (MQ=255)
tGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 2:1670387/1‑93 (MQ=255)
tGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:267177/1‑93 (MQ=255)
ttCGATGG‑TGGGGAAAGGCTGCATGATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 2:4922589/92‑1 (MQ=255)
gTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 2:265824/93‑1 (MQ=255)
gTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 2:776132/93‑1 (MQ=255)
tCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac < 2:2862580/93‑1 (MQ=255)
tCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac > 2:1778771/1‑93 (MQ=255)
tCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac > 1:4265501/1‑93 (MQ=255)
cGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg < 1:1943809/93‑1 (MQ=255)
gATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 2:1259547/93‑1 (MQ=255)
gATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga > 2:1246233/1‑93 (MQ=255)
gATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga > 2:896219/1‑93 (MQ=255)
aTGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac > 2:4246710/1‑93 (MQ=255)
|
ACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGAAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008400‑4008551
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCGCTGGAAGGCTGGCGAACT‑G‑GCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCC > NC_000913/4008382‑4008559
|
ggaagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGG‑‑G < SRR4302532.3588865/72‑1 (MQ=56)
aagcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGG‑‑GAA < SRR4302532.3738520/74‑1 (MQ=55)
agcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGG‑‑AAA > SRR4302532.1197779/20‑94 (MQ=54)
gcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGG‑‑AAA‑G < SRR4302532.2764236/76‑1 (MQ=53)
gcggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGG‑‑AAA‑G < SRR4302532.613910/76‑1 (MQ=53)
cggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaagg < SRR4302532.2286362/77‑7 (MQ=57)
cggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaagg < SRR4302532.2140993/77‑7 (MQ=57)
cgggggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaagg < SRR4302532.4887476/77‑7 (MQ=57)
ggtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggc > SRR4302532.1771334/17‑87 (MQ=57)
gtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggct < SRR4302532.2849785/79‑9 (MQ=57)
gtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggct > SRR4302532.1212566/16‑86 (MQ=57)
gtggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggct < SRR4302532.5178023/79‑9 (MQ=57)
tggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggctg < SRR4302532.5274917/80‑10 (MQ=57)
ggggaagagaatgtggcaaaaagaaagagggtttgtattgcgttggGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggct < SRR4302532.6311407/48‑9 (MQ=60)
ggcgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggctgt > SRR4302532.3248642/14‑84 (MQ=57)
cgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCAT > SRR4302532.5145083/12‑94 (MQ=49)
cgaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCAT > SRR4302532.1245930/12‑94 (MQ=49)
gaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATT > SRR4302532.1237836/11‑94 (MQ=49)
gaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATT < SRR4302532.2566703/84‑1 (MQ=49)
gaagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATT > SRR4302532.2730081/11‑94 (MQ=49)
aagaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTA > SRR4302532.2000233/10‑94 (MQ=48)
agaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggctgcattag > SRR4302532.3073806/9‑79 (MQ=57)
agaaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTAT > SRR4302532.4741730/9‑94 (MQ=48)
agaaactcG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTAT < SRR4302532.3198624/86‑1 (MQ=48)
aaactgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGG < SRR4302532.39465/88‑1 (MQ=51)
ACTGG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302532.5904681/1‑94 (MQ=53)
ACTGG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302532.999497/1‑94 (MQ=53)
ctgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCA < SRR4302532.396566/91‑1 (MQ=57)
ctgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCA < SRR4302532.3164682/91‑1 (MQ=57)
ctgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCA > SRR4302532.3463357/4‑94 (MQ=57)
ctgG‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCA > SRR4302532.951019/4‑94 (MQ=57)
CT‑GTGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCA < SRR4302532.396342/94‑1 (MQ=53)
G‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTG > SRR4302532.6014428/1‑94 (MQ=60)
G‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTG > SRR4302532.6014427/1‑94 (MQ=60)
G‑GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTG < SRR4302532.1295677/94‑1 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGC > SRR4302532.5668836/1‑94 (MQ=60)
cgtcagcctgttggattgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggcattattatgggcagtgcg > SRR4302532.5690057/30‑69 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302532.754969/1‑92 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302532.3855428/1‑92 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302532.3526348/1‑92 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc > SRR4302532.4312237/1‑91 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302532.818676/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC < SRR4302532.6082149/91‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCC‑GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGC > SRR4302532.4394370/1‑94 (MQ=57)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcaccagg > SRR4302532.4369800/1‑85 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302532.989488/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302532.3705561/1‑94 (MQ=60)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302532.68503/94‑1 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302532.68505/94‑1 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG > SRR4302532.5955987/1‑94 (MQ=57)
GAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGT < SRR4302532.1697145/94‑1 (MQ=57)
cggattgtattgcgtttgGTGACGGGATGAAAGACGCCGCAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGGGCACCCGCGACT > SRR4302532.2444430/19‑94 (MQ=38)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG < SRR4302532.6121455/94‑1 (MQ=60)
GATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA < SRR4302532.556573/94‑1 (MQ=60)
GATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA < SRR4302532.2941688/94‑1 (MQ=60)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGgaaaggttgcattatgggtcgtgtgcaccagcgtcttga > SRR4302532.5005597/1‑55 (MQ=57)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAA > SRR4302532.2841059/1‑94 (MQ=60)
TTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA > SRR4302532.6176156/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC < SRR4302532.612956/94‑1 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302532.2768266/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302532.3053668/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC < SRR4302532.1188625/94‑1 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTAGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302532.764013/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC < SRR4302532.4797587/94‑1 (MQ=60)
tgcgtttgggGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGCACGCACCAGCGTCTGGAAGACCTT > SRR4302532.4437451/11‑94 (MQ=46)
GCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC > SRR4302532.5473089/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302532.465466/1‑94 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302532.1672949/94‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302532.2629585/94‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC > SRR4302532.3708782/1‑94 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG > SRR4302532.5942023/1‑94 (MQ=60)
GCGGGAGGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT < SRR4302532.866860/94‑1 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302532.3884390/1‑94 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCggga > SRR4302532.2794903/1‑90 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑GA > SRR4302532.6100133/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAG < SRR4302532.4545861/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGT < SRR4302532.3860643/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaagg > SRR4302532.5622897/1‑89 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA > SRR4302532.654059/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA < SRR4302532.3219091/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA < SRR4302532.3219090/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA > SRR4302532.6255297/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG > SRR4302532.5552052/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG < SRR4302532.1431018/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG < SRR4302532.3551671/94‑1 (MQ=60)
ACGCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCCCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGG > SRR4302532.1567350/1‑94 (MQ=60)
GCCGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTA < SRR4302532.4907532/94‑1 (MQ=60)
CGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACT < SRR4302532.3406113/94‑1 (MQ=60)
CGAAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACT > SRR4302532.1318972/1‑94 (MQ=60)
AAATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGATGG‑AAGTGATTGGTACTAA < SRR4302532.274699/94‑1 (MQ=60)
AGTGCGGTCGATGG‑C‑GGGGAAAG‑GCTGCATTAGGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.1943645/94‑1 (MQ=55)
AATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.5863735/94‑1 (MQ=60)
AATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.3323340/94‑1 (MQ=60)
ATGCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATG > SRR4302532.1112014/1‑94 (MQ=60)
GCTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCC > SRR4302532.4025301/1‑94 (MQ=60)
CTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG > SRR4302532.113855/1‑94 (MQ=60)
CTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG < SRR4302532.4582177/94‑1 (MQ=60)
CTGTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG > SRR4302532.276432/1‑94 (MQ=60)
GTCGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGAC > SRR4302532.4409077/1‑94 (MQ=60)
CGATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGA < SRR4302532.2008440/94‑1 (MQ=60)
ATGG‑C‑GGGGAAAT‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACG < SRR4302532.4211934/94‑1 (MQ=60)
ATGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACG > SRR4302532.1186906/1‑94 (MQ=60)
TGG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGC < SRR4302532.1597536/94‑1 (MQ=60)
GG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑CAGTGATTGGTACTAATGCCGACGACGCG > SRR4302532.453132/1‑94 (MQ=60)
GG‑C‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GTAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302532.5227900/94‑1 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCC < SRR4302532.2429934/94‑1 (MQ=60)
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GCGCTGGAAGGCTGGCGAACT‑G‑GCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCC > NC_000913/4008382‑4008559
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
