Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,469 |
+G |
intergenic (+36/‑197) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,466 | 1 | . | G | 100.0%
| 539.9
/ NA
| 145 | intergenic (+33/‑200) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (78/67); total (78/67) |
Only 100 of 147 total aligned reads displayed.
AACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008399‑4008551
|
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATggg < 1:6583209/89‑1 (MQ=255)
actgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATggg < 2:2992138/89‑1 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc > 1:4536471/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc > 1:2280110/4‑93 (MQ=255)
ctgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGc < 2:4408754/90‑1 (MQ=255)
tgggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCa > 2:713210/3‑93 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAg > 2:3677025/2‑93 (MQ=255)
gggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAg < 2:2523121/92‑1 (MQ=255)
ggCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGt > 2:6397383/1‑93 (MQ=255)
gCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTg < 1:2520996/93‑1 (MQ=255)
cTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgc < 2:795572/93‑2 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgcg > 2:1902341/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgcg > 2:3897677/1‑91 (MQ=255)
tACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTgcg > 2:3111292/1‑91 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGGAAG‑G‑CTGGATTATGGGCAGTGCgcacc > 1:5604860/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacc > 2:5136573/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacc > 2:5720606/3‑93 (MQ=255)
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCgcacc > 2:3643001/3‑93 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAg < 1:5836693/93‑1 (MQ=255)
cTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAg < 1:4041548/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 1:866450/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 1:4922669/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc < 1:5078385/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGc > 2:2011403/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg < 2:410613/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg > 1:4902761/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCg > 2:3864395/1‑93 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc < 2:4593789/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc < 1:5924210/93‑1 (MQ=255)
aGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTc > 1:1838594/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCt > 2:4017896/1‑93 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 1:1056897/89‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 2:5152570/89‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt > 2:6403989/5‑93 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATc < 2:335385/90‑1 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATc > 2:175197/4‑93 (MQ=255)
ttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATc < 2:929718/90‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:2541985/91‑1 (MQ=255)
ggtgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATGATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATccc < 2:2522323/92‑1 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 2:5674995/1‑93 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 1:2185073/1‑93 (MQ=255)
tgACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATCATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGa > 2:6247931/1‑93 (MQ=255)
gANGGGATGAACGACGCCGAANNGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg < 2:2435353/93‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc < 2:1770585/93‑1 (MQ=255)
aCGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGc > 2:931356/1‑93 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt < 1:737491/93‑1 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 1:3896910/1‑92 (MQ=255)
ggATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gg > 1:5501570/1‑92 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:1986235/1‑91 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:5522726/1‑91 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:3644748/1‑91 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaa < 1:302638/93‑4 (MQ=255)
aTGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaa < 2:5301800/93‑4 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag > 2:2414163/1‑89 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag < 1:1068601/93‑5 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTg > 2:2852590/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa > 1:1174402/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGa < 2:5431799/93‑1 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt < 1:3177658/93‑1 (MQ=255)
cgacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAt > 2:3203999/1‑93 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCCCCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 2:6547914/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:871684/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 1:2244435/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAtt < 2:3756621/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 2:4805245/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTg < 2:6052003/93‑1 (MQ=255)
cgCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTgg < 2:5347832/93‑1 (MQ=255)
gCCGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGt > 1:1206236/1‑93 (MQ=255)
ccGAAATGCTGTCGATGGCG‑GGGAAA‑GTCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTa > 2:303501/1‑93 (MQ=255)
cGAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTAc < 1:460624/93‑1 (MQ=255)
gAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:1199901/1‑93 (MQ=255)
gAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 1:1742587/1‑93 (MQ=255)
gAAATGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACt > 2:608246/1‑93 (MQ=255)
aaaTGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTa > 1:5147812/1‑93 (MQ=255)
aaTGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTaa > 1:535230/1‑93 (MQ=255)
aTGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTagt > 2:1366886/1‑91 (MQ=255)
aTGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:3317426/93‑1 (MQ=255)
aTGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAAt < 2:2542082/93‑1 (MQ=255)
tGCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATg < 1:6184572/93‑1 (MQ=255)
gCTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGc < 1:2924265/93‑1 (MQ=255)
cTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc < 1:3534800/93‑1 (MQ=255)
cTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc > 1:1743840/1‑93 (MQ=255)
cTGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGcc > 2:6133468/1‑93 (MQ=255)
tGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 2:371689/1‑93 (MQ=255)
tGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:6401371/1‑93 (MQ=255)
tGTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg > 1:4101900/1‑93 (MQ=255)
cgTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcg < 1:506992/92‑1 (MQ=255)
gTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:4260896/93‑1 (MQ=255)
gTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 2:4865780/93‑1 (MQ=255)
gTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:5663612/93‑1 (MQ=255)
gTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga > 2:1185427/1‑93 (MQ=255)
gTCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcga < 1:3422428/93‑1 (MQ=255)
tCGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgac < 2:3028737/93‑1 (MQ=255)
cGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg < 1:3548998/93‑1 (MQ=255)
cGATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacg > 1:523193/1‑93 (MQ=255)
gATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga < 2:5635097/93‑1 (MQ=255)
gATGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCcgacga > 2:1573723/1‑93 (MQ=255)
aTGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 2:1135102/93‑1 (MQ=255)
aTGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac > 1:5701826/1‑93 (MQ=255)
aTGGCG‑GGGAAAGG‑CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCgacgac < 2:841724/93‑1 (MQ=255)
|
AACTGGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGAAA‑G‑CTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGAC > NC_000913/4008399‑4008551
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGC > NC_000913/4008381‑4008558
|
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG > SRR4302547.2253529/24‑94 (MQ=57)
tggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG > SRR4302547.1736818/24‑94 (MQ=57)
ggaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑G > SRR4302547.3170620/23‑94 (MQ=56)
gaagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GA < SRR4302547.227250/73‑1 (MQ=56)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA > SRR4302547.3693213/21‑94 (MQ=55)
aagcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑GAA < SRR4302547.2110905/74‑1 (MQ=55)
gcggtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCG‑GGG‑‑AAA‑G < SRR4302547.6469044/76‑1 (MQ=53)
cggtggcgacgaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaagg > SRR4302547.6596780/18‑88 (MQ=57)
cggtggcgaagaacctgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaagg < SRR4302547.2484794/77‑7 (MQ=57)
gtggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggct < SRR4302547.94796/79‑9 (MQ=57)
tggcgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGgaaaggctg > SRR4302547.5281506/15‑85 (MQ=57)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCAT > SRR4302547.150802/12‑94 (MQ=49)
cgaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCAT > SRR4302547.3029754/12‑94 (MQ=49)
gaagaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATT < SRR4302547.1565438/84‑1 (MQ=49)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTAT > SRR4302547.317162/9‑94 (MQ=48)
agaaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTAT < SRR4302547.1464405/86‑1 (MQ=48)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAT‑GCTGCATTATGG > SRR4302547.6655329/7‑94 (MQ=51)
aaactgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGG > SRR4302547.1461169/7‑94 (MQ=51)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGG < SRR4302547.2488394/94‑1 (MQ=50)
AACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGG > SRR4302547.416958/1‑94 (MQ=50)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302547.4630228/1‑94 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGC > SRR4302547.2326261/1‑94 (MQ=53)
ACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGC < SRR4302547.6720289/94‑1 (MQ=53)
tgGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAG > SRR4302547.2282460/3‑94 (MQ=58)
G‑GGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGT < SRR4302547.2451268/94‑1 (MQ=60)
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGC < SRR4302547.2571947/94‑1 (MQ=60)
CTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcg > SRR4302547.5390136/1‑92 (MQ=60)
TACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgc > SRR4302547.337459/1‑91 (MQ=60)
ACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgca < SRR4302547.4871808/94‑5 (MQ=60)
agcctgaaggtctgtattgcgtttggtgtcggggTGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGcgcgcc > SRR4302547.6218006/35‑88 (MQ=54)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGG‑‑AAG‑GCTGGATTATGGGCAGTGCGCACC > SRR4302547.5720488/4‑94 (MQ=50)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGG‑‑AAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302547.6054993/4‑94 (MQ=60)
gcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCA < SRR4302547.3407643/92‑1 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG < SRR4302547.6362301/94‑1 (MQ=60)
C‑CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAG < SRR4302547.5392178/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302547.883027/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302547.5024625/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302547.5957459/94‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC < SRR4302547.4123631/94‑1 (MQ=60)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG > SRR4302547.5004293/1‑94 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG > SRR4302547.3313888/1‑94 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302547.5183144/94‑1 (MQ=57)
AAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGTCAGTGCGCACCAGCGTT > SRR4302547.1221192/1‑94 (MQ=44)
AAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTC > SRR4302547.1874931/1‑94 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302547.4432855/94‑1 (MQ=57)
AGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCT < SRR4302547.6046996/94‑1 (MQ=57)
gggtggtattgcgtttgGTGACGAGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGaatgtcaagttcggaagagc < SRR4302547.1842452/77‑21 (MQ=45)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG > SRR4302547.2076823/1‑94 (MQ=60)
tgtattgcgtttgGTGACGGTATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG < SRR4302547.4865767/81‑1 (MQ=60)
tgtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAG > SRR4302547.1805044/14‑94 (MQ=60)
gtattgcgtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGA > SRR4302547.3204810/13‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGCAAG‑GCTGCATTATGGGCAGTGCGCACCAGAGTCTGAAAGAC > SRR4302547.4030477/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302547.3631094/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC > SRR4302547.5565756/1‑94 (MQ=60)
TGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTT > SRR4302547.4729456/1‑94 (MQ=60)
GCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC > SRR4302547.1853310/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302547.6644422/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302547.1029109/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302547.4292256/1‑94 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302547.1779384/89‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302547.6373042/89‑1 (MQ=60)
gtttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAT < SRR4302547.3100901/89‑1 (MQ=60)
tttgGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATC < SRR4302547.1077919/90‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302547.5692588/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA < SRR4302547.939594/94‑1 (MQ=60)
GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGA > SRR4302547.2228876/1‑94 (MQ=60)
GACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCACCCCGAGC > SRR4302547.811310/1‑94 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G < SRR4302547.751299/94‑1 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302547.5830561/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302547.3976144/1‑94 (MQ=60)
GGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GG > SRR4302547.5615165/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAG < SRR4302547.308281/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGT < SRR4302547.1089880/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGA > SRR4302547.1198134/1‑94 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT < SRR4302547.1788185/94‑1 (MQ=60)
ACGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGAT > SRR4302547.5219323/1‑94 (MQ=60)
CGACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATT < SRR4302547.3240957/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302547.888404/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTG < SRR4302547.2289714/94‑1 (MQ=60)
CGCCGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGT > SRR4302547.1230577/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT < SRR4302547.469134/94‑1 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302547.3037007/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302547.1224111/1‑94 (MQ=60)
CGAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACT > SRR4302547.1776886/1‑94 (MQ=60)
GAAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTA > SRR4302547.5253826/1‑94 (MQ=60)
AAATGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAA > SRR4302547.544902/1‑94 (MQ=60)
TGCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGC < SRR4302547.6312935/94‑1 (MQ=60)
GCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCC < SRR4302547.2982575/94‑1 (MQ=60)
GCTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCC > SRR4302547.1778203/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302547.4185309/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302547.3699325/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG > SRR4302547.6534897/1‑94 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302547.3606970/94‑1 (MQ=60)
CTGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCG < SRR4302547.4725225/94‑1 (MQ=60)
CGTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGA < SRR4302547.516194/94‑1 (MQ=60)
GTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302547.3492111/94‑1 (MQ=60)
GTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302547.4348088/94‑1 (MQ=60)
GTCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGAC < SRR4302547.5780534/94‑1 (MQ=60)
TCGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACG > SRR4302547.532665/1‑94 (MQ=60)
CGATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGA < SRR4302547.3621421/94‑1 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC > SRR4302547.171841/1‑94 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC > SRR4302547.5819606/1‑94 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC < SRR4302547.6580736/94‑1 (MQ=60)
GATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGAC > SRR4302547.508670/1‑94 (MQ=60)
ATGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACG > SRR4302547.5767409/1‑94 (MQ=60)
TGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGC > SRR4302547.3747605/1‑94 (MQ=60)
TGGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGC > SRR4302547.4852321/1‑94 (MQ=60)
GGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302547.1856817/1‑94 (MQ=60)
GGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302547.4499608/94‑1 (MQ=60)
GGC‑‑GGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCG > SRR4302547.568183/1‑94 (MQ=60)
GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGC > SRR4302547.2985126/1‑94 (MQ=60)
GGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGGAAGTGATTGGTACTAATGCCGACGACGCGGTGC > SRR4302547.4703879/1‑94 (MQ=60)
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TGCGCTGGAAGGCTGGCGAACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑‑GGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GAAGTGATTGGTACTAATGCCGACGACGCGGTGC > NC_000913/4008381‑4008558
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
