Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,008,491 |
2 bp→CG |
intergenic (+58/‑174) |
b4555 → / → yigM |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,008,491 | 0 | G | C | 100.0%
| 567.8
/ NA
| 159 | intergenic (+58/‑175) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (74/85); total (74/85) |
| * | NC_000913 | 4,008,492 | 0 | C | G | 99.4%
| 561.6
/ NA
| 158 | intergenic (+59/‑174) | b4555/yigM | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (1/0); new base G (72/85); total (73/85) |
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 167 total aligned reads displayed.
AGCTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGAAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACT > NC_000913/4008409‑4008577
||
gccTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCgcacc > 1:791574/3‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCC‑GGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:4251499/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAgg > 1:4227871/1‑92 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc < 2:4328641/93‑1 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:3585612/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc > 1:956820/1‑93 (MQ=255)
tGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGc < 1:66123/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg < 1:1641550/93‑1 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 2:1296504/1‑93 (MQ=255)
gAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCg > 1:5755649/1‑93 (MQ=255)
ggATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCt < 1:5916574/93‑1 (MQ=255)
tttggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCAt < 2:1727595/89‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:704227/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:704226/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 1:1618191/91‑1 (MQ=255)
tggtgACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATcc < 2:4971818/91‑1 (MQ=255)
gACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAg > 2:2100642/1‑93 (MQ=255)
cGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCt < 2:5184845/93‑1 (MQ=255)
gggATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑g > 2:586952/1‑93 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGcggga > 1:2704025/1‑89 (MQ=255)
gATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑gga > 2:2900952/1‑91 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag < 2:1949765/93‑5 (MQ=255)
tGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑ggaag < 1:3735156/93‑5 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTg > 2:264074/1‑93 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTg < 1:3115705/93‑1 (MQ=255)
aaCGACGCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTg < 2:3137003/93‑1 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGa > 2:3514420/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGa > 1:632002/1‑93 (MQ=255)
acgacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGa < 2:5551018/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGAtt < 1:3436527/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGAtt < 1:1384626/93‑1 (MQ=255)
gacgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGAtt < 2:2727450/93‑1 (MQ=255)
acgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTg > 1:5366060/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTg > 2:5156872/1‑93 (MQ=255)
acgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTg < 2:2245207/93‑1 (MQ=255)
cgCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCCCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTgg > 1:1516147/1‑93 (MQ=255)
cgCCGAAATGCTGTAGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTgg > 2:3286360/1‑93 (MQ=255)
gCCGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGt < 1:4745399/93‑1 (MQ=255)
cGAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTAc < 1:3296422/93‑1 (MQ=255)
gAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑GAGTGATTGGTACt > 2:2659482/1‑93 (MQ=255)
gAAATGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACt > 2:5539366/1‑93 (MQ=255)
aaaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTa > 2:4710536/1‑93 (MQ=255)
aaaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGATGG‑AAGTGATTGGTACTa < 1:265504/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTaa < 1:5666223/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTaa < 2:421874/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTaa < 2:421873/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTaa < 2:5288156/93‑1 (MQ=255)
aaTGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTaa < 1:3216533/93‑1 (MQ=255)
tGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATg > 1:1075907/1‑93 (MQ=255)
tGCTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATg > 2:4451836/1‑93 (MQ=255)
cTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGcc < 1:4431194/93‑1 (MQ=255)
cTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGcc > 1:3893941/1‑93 (MQ=255)
cTGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGcc > 2:326993/1‑93 (MQ=255)
tGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcg > 2:1670387/1‑93 (MQ=255)
tGTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcg > 2:4618886/1‑93 (MQ=255)
ttCGATGG‑TGGGGAAAGGCTGCATGATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcga < 2:4922589/92‑1 (MQ=255)
gTCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcga < 2:776132/93‑1 (MQ=255)
tCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcgac > 2:1778771/1‑93 (MQ=255)
tCGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcgac < 2:2862580/93‑1 (MQ=255)
cGATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcgacg < 1:1943809/93‑1 (MQ=255)
gATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcgacga > 2:896219/1‑93 (MQ=255)
gATGG‑CGGGGAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCcgacga > 2:1246233/1‑93 (MQ=255)
ggcggggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GTAAGTGATTGGTACTAATGCCGACGAcgc < 1:5054425/89‑1 (MQ=255)
gcggggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑CAGTGATTGGTACTAATGCCGACGAcgcg > 1:437965/4‑93 (MQ=255)
cggggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCgg < 2:4466181/91‑1 (MQ=255)
cggggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCgg < 1:5861390/91‑1 (MQ=255)
ggggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGt < 2:2260528/92‑1 (MQ=255)
gggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTg > 1:3665109/1‑93 (MQ=255)
gggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTg > 2:3550725/1‑93 (MQ=255)
gggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTg > 2:4813301/1‑93 (MQ=255)
ggAAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGc < 1:2351478/93‑1 (MQ=255)
aaggCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGc > 2:3725327/4‑93 (MQ=255)
aaggCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGCGATTGGTACTAATGCCGACGACGCGGTGCCGc > 1:5460017/4‑93 (MQ=255)
aggCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCa > 1:4346356/3‑93 (MQ=255)
aggCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCa < 1:1183419/91‑1 (MQ=255)
ggCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAt < 2:5841925/92‑1 (MQ=255)
gCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAtt > 1:2628476/1‑93 (MQ=255)
cTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTa < 2:378179/93‑1 (MQ=255)
tGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGCGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAt > 2:5766905/1‑93 (MQ=255)
tGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAt > 1:50387/1‑93 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCTTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1657154/93‑1 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 2:383212/93‑1 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:573060/93‑1 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc > 1:1989713/1‑93 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1804050/93‑1 (MQ=255)
gCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATc < 1:1054860/93‑1 (MQ=255)
cATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt < 1:4976465/93‑1 (MQ=255)
cATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt > 1:940281/1‑93 (MQ=255)
cATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCt < 2:199396/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 1:2562207/93‑1 (MQ=255)
ttATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGc < 2:1325476/93‑1 (MQ=255)
aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt > 2:4701548/1‑93 (MQ=255)
aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt < 2:3767761/93‑1 (MQ=255)
aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt < 2:1459593/93‑1 (MQ=255)
aTGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGt > 2:2884237/1‑93 (MQ=255)
tGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTa > 2:6102919/1‑93 (MQ=255)
gggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaa < 1:4710266/93‑1 (MQ=255)
gggCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTaa < 2:3571405/93‑1 (MQ=255)
gCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAGAc > 1:4288826/1‑93 (MQ=255)
gCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAAc < 2:4992451/93‑1 (MQ=255)
||
AGCTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑C‑GGGAAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACT > NC_000913/4008409‑4008577
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > NC_000913/4008404‑4008579
|
GCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGC > SRR4302532.5668836/1‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC > SRR4302532.818676/4‑94 (MQ=60)
agcCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACC < SRR4302532.6082149/91‑1 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCCGGG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGC > SRR4302532.4394370/1‑94 (MQ=57)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302532.989488/1‑94 (MQ=60)
CTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGC > SRR4302532.3705561/1‑94 (MQ=60)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302532.68505/94‑1 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG < SRR4302532.68503/94‑1 (MQ=57)
TGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCG > SRR4302532.5955987/1‑94 (MQ=57)
GAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGT < SRR4302532.1697145/94‑1 (MQ=57)
cggattgtattgcgtttgGTGACGGGATGAAAGACGCCGCAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGGGCACCCGCGACT > SRR4302532.2444430/19‑94 (MQ=38)
GGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTG < SRR4302532.6121455/94‑1 (MQ=60)
GATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA < SRR4302532.556573/94‑1 (MQ=60)
GATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGA < SRR4302532.2941688/94‑1 (MQ=60)
ATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAA > SRR4302532.2841059/1‑94 (MQ=60)
TTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAA > SRR4302532.6176156/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC < SRR4302532.1188625/94‑1 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302532.2768266/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC < SRR4302532.612956/94‑1 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302532.3053668/1‑94 (MQ=60)
T‑ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTAGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGAC > SRR4302532.764013/1‑94 (MQ=60)
ATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACC < SRR4302532.4797587/94‑1 (MQ=60)
tgcgtttgggGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGCACGCACCAGCGTCTGGAAGACCTT > SRR4302532.4437451/11‑94 (MQ=46)
GCGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTC > SRR4302532.5473089/1‑94 (MQ=60)
CGTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCA > SRR4302532.465466/1‑94 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC > SRR4302532.3708782/1‑94 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302532.2629585/94‑1 (MQ=60)
TG‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCC < SRR4302532.1672949/94‑1 (MQ=60)
TGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAG > SRR4302532.5942023/1‑94 (MQ=60)
GCGGGAGGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT < SRR4302532.866860/94‑1 (MQ=60)
CGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G > SRR4302532.3884390/1‑94 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCggga > SRR4302532.2794903/1‑90 (MQ=60)
GGATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑GA > SRR4302532.6100133/1‑94 (MQ=60)
ATGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAG < SRR4302532.4545861/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGT < SRR4302532.3860643/94‑1 (MQ=60)
TGAACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑Ggaagg > SRR4302532.5622897/1‑89 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA > SRR4302532.6255297/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA > SRR4302532.654059/1‑94 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA < SRR4302532.3219090/94‑1 (MQ=60)
AACGACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGA < SRR4302532.3219091/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG > SRR4302532.5552052/1‑94 (MQ=60)
GACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG < SRR4302532.1431018/94‑1 (MQ=60)
GACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTG < SRR4302532.3551671/94‑1 (MQ=60)
ACGCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCCCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGG > SRR4302532.1567350/1‑94 (MQ=60)
GCCGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTA < SRR4302532.4907532/94‑1 (MQ=60)
CGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACT > SRR4302532.1318972/1‑94 (MQ=60)
CGAAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACT < SRR4302532.3406113/94‑1 (MQ=60)
AAATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGATGG‑AAGTGATTGGTACTAA < SRR4302532.274699/94‑1 (MQ=60)
AGTGCGGTCGATGG‑CGGGGAAAG‑GCTGCATTAGGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.1943645/94‑1 (MQ=55)
AATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.5863735/94‑1 (MQ=60)
AATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAAT < SRR4302532.3323340/94‑1 (MQ=60)
ATGCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATG > SRR4302532.1112014/1‑94 (MQ=60)
GCTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCC > SRR4302532.4025301/1‑94 (MQ=60)
CTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG > SRR4302532.113855/1‑94 (MQ=60)
CTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG < SRR4302532.4582177/94‑1 (MQ=60)
CTGTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCG > SRR4302532.276432/1‑94 (MQ=60)
GTCGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGAC > SRR4302532.4409077/1‑94 (MQ=60)
CGATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACATTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGA < SRR4302532.2008440/94‑1 (MQ=60)
ATGG‑CGGGGAAAT‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACG < SRR4302532.4211934/94‑1 (MQ=60)
ATGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACG > SRR4302532.1186906/1‑94 (MQ=60)
TGG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGC < SRR4302532.1597536/94‑1 (MQ=60)
GG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑CAGTGATTGGTACTAATGCCGACGACGCG > SRR4302532.453132/1‑94 (MQ=60)
GG‑CGGGGAAAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑GTAAGTGATTGGTACTAATGCCGACGACGCG < SRR4302532.5227900/94‑1 (MQ=60)
cggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGT < SRR4302532.6064615/85‑1 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTG > SRR4302532.3788204/9‑94 (MQ=60)
ggggaaagGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTG > SRR4302532.5869389/9‑94 (MQ=60)
GG‑‑AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCC < SRR4302532.2429934/94‑1 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302532.233087/1‑94 (MQ=60)
AAG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCA > SRR4302532.4493233/1‑94 (MQ=60)
AAAGGCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGCGATTGGTACTAATGCCGACGACGCGGTGCCGC > SRR4302532.5649317/1‑94 (MQ=60)
AG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAT < SRR4302532.1222949/94‑1 (MQ=60)
AG‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCAT > SRR4302532.4439144/1‑94 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT > SRR4302532.4924181/1‑94 (MQ=60)
G‑GCTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATT > SRR4302532.2716516/1‑94 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT > SRR4302532.2724656/1‑94 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT < SRR4302532.5398418/94‑1 (MQ=60)
CTGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTAT > SRR4302532.52173/1‑94 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAATACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATC < SRR4302532.517196/94‑1 (MQ=60)
TGCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATC > SRR4302532.2055866/1‑94 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCTTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1713311/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1864271/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1090421/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT > SRR4302532.972504/1‑94 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.1690892/94‑1 (MQ=60)
GCATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCT < SRR4302532.593047/94‑1 (MQ=60)
CATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTG < SRR4302532.5593105/94‑1 (MQ=60)
CATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTG < SRR4302532.5147060/94‑1 (MQ=60)
ATTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGC > SRR4302532.3556965/1‑94 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302532.3357433/94‑1 (MQ=60)
TTATGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCG < SRR4302532.2647698/94‑1 (MQ=60)
TGGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAA < SRR4302532.1584105/94‑1 (MQ=60)
GGGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAA < SRR4302532.4870998/94‑1 (MQ=60)
GGCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAGAC > SRR4302532.4433509/1‑94 (MQ=60)
GCAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACT < SRR4302532.4783514/94‑1 (MQ=60)
CAGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTC < SRR4302532.1858795/94‑1 (MQ=60)
AGTGCGCACCAGCGTCTGAAAGACCTTCATCCCGAGCTGG‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > SRR4302532.4777006/1‑94 (MQ=60)
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GCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGG‑CGGG‑‑AAA‑GCTGCATTATGGGCAGTGGCCACCAGCGTCTGAAAGACCTTCATCCCGAGCT‑G‑AAGTGATTGGTACTAATGCCGACGACGCGGTGCCGCATTATCTGCGTAAACTCT > NC_000913/4008404‑4008579
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
