Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,026,252 |
2 bp→GC |
coding (110‑111/1164 nt) |
fadA ← |
thiolase I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,026,252 | 0 | C | G | 100.0%
| 714.2
/ NA
| 202 | T37S (ACG→AGC) | fadA | thiolase I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (97/105); total (97/105) |
| * | NC_000913 | 4,026,253 | 0 | G | C | 100.0%
| 693.4
/ NA
| 201 | T37S (ACG→AGC) | fadA | thiolase I |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (96/105); total (96/105) |
Only 100 of 210 total aligned reads displayed.
AAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCA > NC_000913/4026166‑4026339
||
aaaCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGc > 2:8010/1‑93 (MQ=255)
aaCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCCGCAGGCTACGCa > 1:5843167/1‑93 (MQ=255)
aaCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCa > 2:3080203/1‑93 (MQ=255)
aCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCAt < 2:2647749/93‑1 (MQ=255)
cccTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCAtt > 2:3863821/1‑93 (MQ=255)
cTGCTCCAGCGTCTGCTGCACACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa < 1:2421706/93‑1 (MQ=255)
cTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCCGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa > 1:4604375/1‑93 (MQ=255)
cTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa > 1:413240/1‑93 (MQ=255)
cTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa > 1:5114819/1‑93 (MQ=255)
gCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt > 2:5268864/1‑93 (MQ=255)
gCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt < 1:552075/93‑1 (MQ=255)
tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa > 2:2841987/1‑93 (MQ=255)
tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa < 2:4724491/93‑1 (MQ=255)
tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGC‑TCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAg > 1:168853/1‑93 (MQ=255)
cccAGCGTCTGCTGCACACACCCCCAGTAAATATCGTCGAGGCCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGa < 1:3767880/92‑1 (MQ=255)
ccAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAg > 1:3806850/1‑93 (MQ=255)
aGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCg < 2:4034726/93‑1 (MQ=255)
aGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCg > 1:2833866/1‑93 (MQ=255)
gCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCgg > 2:1949701/1‑93 (MQ=255)
gCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCgg > 2:3977122/1‑93 (MQ=255)
gTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag > 1:4010512/1‑93 (MQ=255)
gTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag > 2:5231785/1‑93 (MQ=255)
tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaga > 2:5130133/1‑93 (MQ=255)
tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGAATTAAATGAGCGgaga > 2:4440584/1‑93 (MQ=255)
tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGACGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaga > 2:3444827/1‑93 (MQ=255)
tgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCTGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtct < 1:1008750/93‑1 (MQ=255)
tgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtct > 2:331707/1‑93 (MQ=255)
gcACCCAACCCCAGTAAATATCGTCGAGGGCCTCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt < 2:3378192/93‑1 (MQ=255)
gcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt < 1:1828646/93‑1 (MQ=255)
gcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt < 2:4386717/93‑1 (MQ=255)
gcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt < 2:5923316/93‑1 (MQ=255)
cacacaCCCCCATAAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttc < 1:1232650/93‑1 (MQ=255)
acacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttct < 2:482828/93‑1 (MQ=255)
acacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttct < 1:2316147/93‑1 (MQ=255)
acaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgc > 2:3820222/1‑93 (MQ=255)
aCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacg > 2:4075684/1‑93 (MQ=255)
ccccAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgc < 2:3741628/93‑1 (MQ=255)
ccAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGGTCTTCTgcacgcac > 1:5401585/1‑93 (MQ=255)
cAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGcacgcacg < 2:5360144/93‑1 (MQ=255)
aGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGt > 1:1467788/1‑93 (MQ=255)
aGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGt < 1:6119593/93‑1 (MQ=255)
gTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGtt < 2:2979831/93‑1 (MQ=255)
tAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTa < 2:2098232/93‑1 (MQ=255)
aaaTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTAc < 2:2227044/93‑1 (MQ=255)
aaTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACg > 2:2881930/1‑93 (MQ=255)
atatCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGa > 2:3195746/1‑93 (MQ=255)
atatCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGa > 1:839141/1‑93 (MQ=255)
atCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaaa > 2:5022289/1‑93 (MQ=255)
tcgtcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaaaa < 2:1690445/93‑1 (MQ=255)
tcgtcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaaaa > 1:3437345/1‑93 (MQ=255)
gtcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGc < 2:1066973/93‑1 (MQ=255)
tcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCa < 1:5684897/93‑1 (MQ=255)
cgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAc < 1:3198601/93‑1 (MQ=255)
gAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAcc < 1:1142502/93‑1 (MQ=255)
gAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAcc < 1:3018945/93‑1 (MQ=255)
aGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCg > 1:3874937/1‑93 (MQ=255)
aGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCg > 2:1290225/1‑93 (MQ=255)
aGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATATTCTGCACGCACGTTACGAAAAGCAcag > 1:5565862/1‑91 (MQ=255)
gggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGc > 1:3069411/1‑93 (MQ=255)
gggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGc > 2:4890603/1‑93 (MQ=255)
gccgccGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGccc < 1:4791796/93‑1 (MQ=255)
gccgccGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGccc < 2:1321450/93‑1 (MQ=255)
ccgcggCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTGCGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTGACGAAAAGCACCGCCCt < 1:4352545/93‑1 (MQ=255)
ccgccgCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt < 1:4739673/93‑1 (MQ=255)
ccgccgCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt < 2:1140337/93‑1 (MQ=255)
cgccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt < 2:18202/93‑1 (MQ=255)
gccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGTTCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc > 1:1028941/1‑93 (MQ=255)
ccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg < 2:4228797/93‑1 (MQ=255)
ccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg > 2:6035833/1‑93 (MQ=255)
cgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGa > 2:2392032/1‑93 (MQ=255)
cgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGa > 1:737421/1‑93 (MQ=255)
gcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGaa > 1:3702993/1‑93 (MQ=255)
ccTTCCCGCGCCGGGTTACGCGCCAGCAGGCTACGCATTCAATGAGCGGAGCGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGaa < 2:3637438/92‑1 (MQ=255)
cTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAAc < 2:1564690/93‑1 (MQ=255)
ccAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGc < 2:627327/93‑1 (MQ=255)
cAGCGCCGTGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGcc < 1:134782/93‑1 (MQ=255)
cAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGcc > 2:1534107/1‑93 (MQ=255)
aGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGccc > 1:2311136/1‑93 (MQ=255)
cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGGGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt < 1:5770255/93‑1 (MQ=255)
cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt < 1:2779260/93‑1 (MQ=255)
ccGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCg < 2:5807809/93‑1 (MQ=255)
ccGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCg < 1:2027414/93‑1 (MQ=255)
cGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgg < 2:6136967/93‑1 (MQ=255)
gggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggg > 2:563165/1‑93 (MQ=255)
ggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg < 1:663653/93‑1 (MQ=255)
ggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg > 1:4401301/1‑93 (MQ=255)
gTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGt < 2:4989803/93‑1 (MQ=255)
gTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGt > 2:2619254/1‑93 (MQ=255)
tACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGc < 1:3558935/93‑1 (MQ=255)
aCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCg > 2:1489793/1‑93 (MQ=255)
aCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGGGCg > 2:574169/1‑93 (MQ=255)
gcgcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGaa < 1:2717846/93‑1 (MQ=255)
gcgcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGaa < 2:719825/93‑1 (MQ=255)
cgcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAt < 2:250983/93‑1 (MQ=255)
gcCAGCAGGCTACGCCTTAAATGAGAGGAGCGATCATCTGCACGCACGTTACGAAAATCACCGCCCTTCGAACTGCCCATCGGGGTGCgcagt > 1:2905226/1‑89 (MQ=255)
gcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAtt > 2:1976549/1‑93 (MQ=255)
cagcagGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGc < 2:5386795/93‑1 (MQ=255)
cagcagGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGc > 1:1724554/1‑93 (MQ=255)
cagcagGCTACGCATTAAATGAGCCGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAACGGGGTGCGAATTGc < 2:1955521/93‑1 (MQ=255)
agcaggCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCa > 2:5479609/1‑93 (MQ=255)
||
AAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCA > NC_000913/4026166‑4026339
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATC > NC_000913/4026159‑4026341
|
GATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGG < SRR4302532.2939697/94‑1 (MQ=60)
AAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCCGCAGGCTACGCA > SRR4302532.6045954/1‑94 (MQ=60)
AAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCA > SRR4302532.4115472/1‑94 (MQ=60)
CCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCCGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAA > SRR4302532.4761370/1‑94 (MQ=60)
CCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAA > SRR4302532.427627/1‑94 (MQ=60)
CCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAA > SRR4302532.5290705/1‑94 (MQ=60)
CCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCATTAA > SRR4302532.3851112/1‑94 (MQ=60)
CTGCTCCAGCGTCTGCTGCACACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAA < SRR4302532.2502202/94‑1 (MQ=60)
TGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAT > SRR4302532.5911972/1‑94 (MQ=60)
GCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATG < SRR4302532.571335/94‑1 (MQ=60)
CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA < SRR4302532.716544/94‑1 (MQ=60)
CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA < SRR4302532.2184867/94‑1 (MQ=60)
CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGA < SRR4302532.5697483/94‑1 (MQ=60)
CTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGC‑TCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG > SRR4302532.174511/1‑94 (MQ=60)
TCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG > SRR4302532.3935365/1‑94 (MQ=60)
CCCAGCGTCTGCTGCACACACCCCCAGTAAATATCGTCGAGGCCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAG < SRR4302532.3894684/94‑1 (MQ=60)
CCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGC < SRR4302532.2110110/94‑1 (MQ=60)
CCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGC < SRR4302532.2397299/94‑1 (MQ=60)
CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG > SRR4302532.5270132/1‑94 (MQ=60)
CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG > SRR4302532.1961649/1‑94 (MQ=60)
CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG > SRR4302532.2928618/1‑94 (MQ=60)
CAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCG > SRR4302532.4539203/1‑94 (MQ=60)
AGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGG > SRR4302532.350343/1‑94 (MQ=60)
GCGTCTGCTGCGCACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGA < SRR4302532.2850853/94‑1 (MQ=60)
CGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAG > SRR4302532.4145649/1‑94 (MQ=60)
GTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGA > SRR4302532.2973763/1‑94 (MQ=60)
CTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGA > SRR4302532.3426794/1‑94 (MQ=60)
TGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAT > SRR4302532.1768234/1‑94 (MQ=60)
tccGCACACAACCCAAGTAAATATCGTCAAGGACCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATC < SRR4302532.4942940/91‑1 (MQ=60)
CTGCACACAACCCCAGTAAGTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT > SRR4302532.3091898/1‑94 (MQ=60)
CTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCT > SRR4302532.5739368/1‑94 (MQ=60)
TGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCTGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTT < SRR4302532.1043057/94‑1 (MQ=60)
GCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTC < SRR4302532.1889509/94‑1 (MQ=60)
CACACACCCCCATAAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCT < SRR4302532.1273895/94‑1 (MQ=60)
ACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTG < SRR4302532.2393247/94‑1 (MQ=60)
CAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCAC < SRR4302532.1055547/94‑1 (MQ=60)
CCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGGTCTTCTGCACGCAC > SRR4302532.5588732/1‑94 (MQ=60)
CAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGT > SRR4302532.1517235/1‑94 (MQ=60)
AGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTT < SRR4302532.6330774/94‑1 (MQ=60)
GTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTA > SRR4302532.941137/1‑94 (MQ=60)
GAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTAC < SRR4302532.3968942/94‑1 (MQ=60)
AATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGA > SRR4302532.867936/1‑94 (MQ=60)
TATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAA > SRR4302532.1377355/1‑94 (MQ=60)
ATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAA > SRR4302532.3552514/1‑94 (MQ=60)
TCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAG < SRR4302532.6008723/94‑1 (MQ=60)
GTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAACAGCA > SRR4302532.6312106/1‑94 (MQ=60)
GTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCA > SRR4302532.4698574/1‑94 (MQ=60)
TCTAGGCCCGCCGCTGCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAC < SRR4302532.3706175/94‑1 (MQ=60)
TCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAC < SRR4302532.5883337/94‑1 (MQ=60)
CGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACC < SRR4302532.3304787/94‑1 (MQ=60)
GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCG < SRR4302532.3118541/94‑1 (MQ=60)
GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCG > SRR4302532.4005705/1‑94 (MQ=60)
GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCG < SRR4302532.1180610/94‑1 (MQ=60)
GAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATATTCTGCACGCACGTTACGAAAAGCACAG > SRR4302532.5759133/1‑94 (MQ=60)
AGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGC > SRR4302532.3170834/1‑94 (MQ=60)
GCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCT < SRR4302532.4956817/94‑1 (MQ=60)
CCGCGGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTGCGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTGACGAAAAGCACCGCCCTT < SRR4302532.4499764/94‑1 (MQ=60)
CCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT < SRR4302532.4901509/94‑1 (MQ=60)
CCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTT > SRR4302532.3672124/1‑94 (MQ=60)
CGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGTTCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTC > SRR4302532.1063724/1‑94 (MQ=60)
CGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTC > SRR4302532.1077168/1‑94 (MQ=60)
CGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTC < SRR4302532.5300772/94‑1 (MQ=60)
GCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCG < SRR4302532.6117170/94‑1 (MQ=60)
GCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCG < SRR4302532.2892612/94‑1 (MQ=60)
CCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGA > SRR4302532.762534/1‑94 (MQ=60)
CGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAA > SRR4302532.3827302/1‑94 (MQ=60)
CAGCGCCGTGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCC < SRR4302532.139326/94‑1 (MQ=60)
CAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCC > SRR4302532.2388041/1‑94 (MQ=60)
AGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCA < SRR4302532.6355194/94‑1 (MQ=60)
CGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGGGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATC < SRR4302532.5971030/94‑1 (MQ=60)
CGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATC < SRR4302532.2872506/94‑1 (MQ=60)
CGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATC > SRR4302532.4190462/1‑94 (MQ=60)
CGCCGCGTGACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATC < SRR4302532.316893/94‑1 (MQ=60)
GCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCG > SRR4302532.170881/1‑94 (MQ=60)
CCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCGCCGCCCTTCGAACGGCCCATCGG > SRR4302532.4623597/1‑94 (MQ=60)
CCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGG < SRR4302532.2094992/94‑1 (MQ=60)
CGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGG > SRR4302532.2390784/1‑94 (MQ=60)
GGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCTCATCGGGG > SRR4302532.1235195/1‑94 (MQ=60)
GGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG < SRR4302532.2685821/94‑1 (MQ=60)
GGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG > SRR4302532.1468145/1‑94 (MQ=60)
GGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG < SRR4302532.3269744/94‑1 (MQ=60)
GGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGG > SRR4302532.4551126/1‑94 (MQ=60)
GGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGT < SRR4302532.686595/94‑1 (MQ=60)
GTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTG < SRR4302532.1855394/94‑1 (MQ=60)
TTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGC < SRR4302532.4821809/94‑1 (MQ=60)
TACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCG < SRR4302532.3678015/94‑1 (MQ=60)
GCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAT < SRR4302532.4475993/94‑1 (MQ=60)
GCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAT < SRR4302532.2809250/94‑1 (MQ=60)
GCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAT < SRR4302532.3909161/94‑1 (MQ=60)
CGCCAGCAGGCTACGCCTTAAATGAGAGGAGCGATCATCTGCACGCACGTTACGAAAATCACCGCCCTTCGAACTGCCCATCGGGGTGCGcagt > SRR4302532.3002146/1‑90 (MQ=57)
CGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATT < SRR4302532.5834737/94‑1 (MQ=60)
CGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATT > SRR4302532.840123/1‑94 (MQ=60)
CCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGC > SRR4302532.1782630/1‑94 (MQ=60)
GCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCGCCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATC < SRR4302532.1653824/94‑1 (MQ=60)
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GATATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATC > NC_000913/4026159‑4026341
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
