Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,055,398 |
A→G |
S73P (TCC→CCC) |
glnA ← |
glutamine synthetase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,055,398 | 0 | A | G | 99.0%
| 727.6
/ ‑3.3
| 209 | S73P (TCC→CCC) | glnA | glutamine synthetase |
| Reads supporting (aligned to +/- strand): ref base A (0/2); new base G (90/117); total (90/119) |
| Fisher's exact test for biased strand distribution p-value = 5.07e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.74e-01 |
Only 100 of 223 total aligned reads displayed.
GTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGATGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAGA > NC_000913/4055309‑4055487
|
gTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTTGAGTCGGCGCAGAACGGGATAAACACTGCggtgggtgg > 1:3785719/1‑92 (MQ=255)
gTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGc < 1:2896928/93‑1 (MQ=255)
gTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGAggtgggtgg > 1:1719886/1‑92 (MQ=255)
aTAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTc < 1:3559578/93‑1 (MQ=255)
aTAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTc < 2:2943916/93‑1 (MQ=255)
tAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCt < 2:4846519/93‑1 (MQ=255)
aGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTg > 2:569590/1‑93 (MQ=255)
aGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTg > 2:3813452/1‑93 (MQ=255)
gCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTgg > 1:1152786/1‑93 (MQ=255)
ccTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGc < 1:3264177/93‑1 (MQ=255)
tGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATc < 2:3965856/93‑1 (MQ=255)
tGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATc < 2:2210629/93‑1 (MQ=255)
gCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACGGCGGTGGGTGCGTCTGGCATCa < 2:118731/93‑1 (MQ=255)
cAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAg < 2:4185212/93‑1 (MQ=255)
cAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAg > 2:857784/1‑93 (MQ=255)
ggTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCAc > 1:6065922/1‑93 (MQ=255)
ggTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCAc < 2:5066283/93‑1 (MQ=255)
tGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCa < 2:1523769/93‑1 (MQ=255)
ccAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATg < 2:2149443/93‑1 (MQ=255)
cAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGt > 2:1620502/1‑93 (MQ=255)
cAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGt > 2:2619733/1‑93 (MQ=255)
cAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGt < 2:1158117/93‑1 (MQ=255)
cAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGt < 2:3430303/93‑1 (MQ=255)
ggTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCg > 1:517457/1‑93 (MQ=255)
ttCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCggc > 2:5531086/1‑92 (MQ=255)
ttCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGa < 1:1702171/93‑1 (MQ=255)
tCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAc < 1:1881958/93‑1 (MQ=255)
tCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAc < 1:2030566/93‑1 (MQ=255)
tCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAc > 1:2730833/1‑93 (MQ=255)
tCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAc < 1:4451379/93‑1 (MQ=255)
cAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACt > 2:4928907/1‑93 (MQ=255)
cAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACt < 1:4389775/93‑1 (MQ=255)
cAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGCCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAca > 2:4479825/1‑92 (MQ=255)
aaGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGACGAACGGGTCAATCCCTGCGGTGGGTGCGTCTGGCACCAGCACCATGTCGGACTc > 2:794077/1‑93 (MQ=255)
aaGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGACAATCACTGCGGTGGGTGCGTATGGCATCAGCACCATGTCGGACTc > 1:621800/1‑93 (MQ=255)
aGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCg < 2:1775211/93‑1 (MQ=255)
ggATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGt < 2:2976892/93‑1 (MQ=255)
tGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTaa < 2:189813/93‑1 (MQ=255)
tGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTaa < 2:5221072/93‑1 (MQ=255)
tGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTaa > 1:4156141/1‑93 (MQ=255)
gTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAAt < 1:3167680/93‑1 (MQ=255)
cGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGc < 2:323580/93‑1 (MQ=255)
gCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGTATCAGCACCATGTCGGACTCGTTAATGct > 2:309442/1‑92 (MQ=255)
gCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGcc > 1:527872/1‑93 (MQ=255)
gCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGcc > 2:574271/1‑93 (MQ=255)
aaCGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCtt > 1:1054836/1‑93 (MQ=255)
aCGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCttt < 1:5223176/93‑1 (MQ=255)
aCGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCttt < 1:417705/93‑1 (MQ=255)
aCGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCttt > 1:2591152/1‑93 (MQ=255)
ggATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTcc < 2:3770775/93‑1 (MQ=255)
ggATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTcc < 1:1377151/93‑1 (MQ=255)
ggATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTCTcc < 2:3520951/93‑1 (MQ=255)
gATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCa < 2:1290935/93‑1 (MQ=255)
tAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgc < 2:3587828/93‑1 (MQ=255)
tAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgc < 1:1106739/93‑1 (MQ=255)
tAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgc < 1:2712963/93‑1 (MQ=255)
aaTCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgcc > 1:5910337/1‑93 (MQ=255)
aTCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgccg > 1:2763909/1‑93 (MQ=255)
aTCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgccg > 2:3869888/1‑93 (MQ=255)
tCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgccgc > 1:3455487/1‑93 (MQ=255)
tCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgccgc > 2:462226/1‑93 (MQ=255)
tCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAgccgc > 1:2272980/1‑93 (MQ=255)
ggTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAAt > 2:2379430/1‑93 (MQ=255)
ggTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAAt < 2:1546726/93‑1 (MQ=255)
ggTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAAt < 2:3367646/93‑1 (MQ=255)
ttGGAGTCGGCGAAGAACGGGTCAATCACTGCTGTGGGTGCGTCTGGTATCAGCACCATTTCGGACTCGTTAATGTTTTTCCAGCCGCCAATc > 2:5453710/2‑93 (MQ=255)
gTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATc > 2:4000571/1‑93 (MQ=255)
tGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCg > 2:5314580/1‑93 (MQ=255)
ggAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCga < 1:568429/93‑1 (MQ=255)
ggAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCga < 1:4840643/93‑1 (MQ=255)
gAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCgag < 1:609813/93‑1 (MQ=255)
gTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCgagga < 1:839724/93‑1 (MQ=255)
gTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCgagga > 2:4358236/1‑93 (MQ=255)
tCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCgaggag > 2:561916/1‑93 (MQ=255)
ggCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGcc < 2:2082079/93‑1 (MQ=255)
gCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCg < 1:5743936/93‑1 (MQ=255)
cGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCTTCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGt > 2:2011669/1‑93 (MQ=255)
gaagaaCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTc > 1:4582907/1‑93 (MQ=255)
aagaaCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCa > 1:2334359/1‑93 (MQ=255)
aagaaCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCa > 2:4067515/1‑93 (MQ=255)
gaaCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCaaa > 1:4270695/1‑93 (MQ=255)
gaaCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCaaa < 1:5296239/93‑1 (MQ=255)
aaCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAAc < 1:130866/93‑1 (MQ=255)
aCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACa < 2:2498895/93‑1 (MQ=255)
aCGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACa < 1:2960635/93‑1 (MQ=255)
ggTCAATCCCTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGCCTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACAttt < 2:2743396/93‑1 (MQ=255)
ggTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACAttt < 2:1438796/93‑1 (MQ=255)
gTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACAtttt > 2:2534590/1‑93 (MQ=255)
gcAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAGTGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTg < 1:5018532/92‑1 (MQ=255)
aaTCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGcc > 2:1016542/1‑93 (MQ=255)
aTCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCct < 1:550377/93‑1 (MQ=255)
aTCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCct > 1:5855882/1‑93 (MQ=255)
cACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCcttc < 2:4007815/93‑1 (MQ=255)
cACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCcttc < 2:5931151/93‑1 (MQ=255)
aCTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCcttct > 1:5559355/1‑93 (MQ=255)
aCTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCcttct > 2:306527/1‑93 (MQ=255)
aCTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCcttct < 2:677068/93‑1 (MQ=255)
ggtgggtgCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCgaa < 1:4623879/93‑1 (MQ=255)
ggtgggtgCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCgaa < 2:1743610/93‑1 (MQ=255)
gTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCgaag > 2:1822894/1‑93 (MQ=255)
|
GTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGATGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAGA > NC_000913/4055309‑4055487
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CACGGTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGATGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAGAAT > NC_000913/4055305‑4055489
|
CACGGTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGG > SRR4302532.1449557/1‑94 (MQ=60)
ACGGTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGT < SRR4302532.2188078/94‑1 (MQ=60)
ACGGTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGT < SRR4302532.3193953/94‑1 (MQ=60)
CGGTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTG < SRR4302532.5852814/94‑1 (MQ=60)
GTCATAGCCTTGCAGGGTGCCAGGTTCAAGTATGTCGCAACGGATAATCAGGGTAGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCG < SRR4302532.543343/94‑1 (MQ=60)
GTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCG < SRR4302532.2993637/94‑1 (MQ=60)
ATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCT < SRR4302532.3678682/94‑1 (MQ=60)
TAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTG < SRR4302532.4707718/94‑1 (MQ=60)
AGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGG > SRR4302532.1191247/1‑94 (MQ=60)
GCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGC < SRR4302532.138718/94‑1 (MQ=60)
CCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCA > SRR4302532.5251674/1‑94 (MQ=60)
CCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCA < SRR4302532.3311478/94‑1 (MQ=60)
CCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCA < SRR4302532.3372731/94‑1 (MQ=60)
CCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGAGGGTGCGTCTGGCA > SRR4302532.5482011/1‑94 (MQ=60)
TTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATC < SRR4302532.3341303/94‑1 (MQ=60)
CAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGC > SRR4302532.4136605/1‑94 (MQ=60)
AGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCA > SRR4302532.671557/1‑94 (MQ=60)
AGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCA > SRR4302532.4558324/1‑94 (MQ=60)
GGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCAC < SRR4302532.1447452/94‑1 (MQ=60)
GGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCAC > SRR4302532.6275417/1‑94 (MQ=60)
GTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCA < SRR4302532.994787/94‑1 (MQ=60)
CAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTC > SRR4302532.2846373/1‑94 (MQ=60)
AGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCG > SRR4302532.535522/1‑94 (MQ=60)
AGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCG > SRR4302532.535523/1‑94 (MQ=60)
AGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCG > SRR4302532.5930796/1‑94 (MQ=60)
AGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCG < SRR4302532.2779572/94‑1 (MQ=60)
AGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCG < SRR4302532.4350045/94‑1 (MQ=60)
GTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGA > SRR4302532.6106303/1‑94 (MQ=60)
TTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAC > SRR4302532.2822647/1‑94 (MQ=60)
TTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGAC < SRR4302532.1759576/94‑1 (MQ=60)
TCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACT < SRR4302532.6298060/94‑1 (MQ=60)
TCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACT < SRR4302532.4603087/94‑1 (MQ=60)
TCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACT < SRR4302532.1944353/94‑1 (MQ=60)
TCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACT < SRR4302532.2098243/94‑1 (MQ=60)
CAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTC < SRR4302532.4539007/94‑1 (MQ=60)
CAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGACAATCACTGCGGTGGGTGCGTATGGCATCAGCACCATGTCGGACTC > SRR4302532.643493/1‑94 (MQ=60)
AAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCG > SRR4302532.303624/1‑94 (MQ=60)
ATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAA > SRR4302532.4295564/1‑94 (MQ=60)
GTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATG < SRR4302532.3562667/94‑1 (MQ=60)
GTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATG < SRR4302532.3272885/94‑1 (MQ=60)
GTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATG > SRR4302532.6231158/1‑94 (MQ=60)
TCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGC < SRR4302532.5602689/94‑1 (MQ=60)
TCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGC < SRR4302532.3594657/94‑1 (MQ=60)
CGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCC > SRR4302532.1749491/1‑94 (MQ=60)
CGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCC > SRR4302532.546299/1‑94 (MQ=60)
CGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCC > SRR4302532.2808483/1‑94 (MQ=60)
CAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTT > SRR4302532.1090397/1‑94 (MQ=60)
AACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTT > SRR4302532.2677767/1‑94 (MQ=60)
AACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTT < SRR4302532.5441965/94‑1 (MQ=60)
ACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTC > SRR4302532.708705/1‑94 (MQ=60)
ACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTC < SRR4302532.5403300/94‑1 (MQ=60)
ACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTC < SRR4302532.432206/94‑1 (MQ=60)
CGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCC < SRR4302532.2180742/94‑1 (MQ=60)
GGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCA < SRR4302532.1423307/94‑1 (MQ=60)
GGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCA < SRR4302532.4739573/94‑1 (MQ=60)
GGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCA < SRR4302532.6031842/94‑1 (MQ=60)
GGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCA < SRR4302532.3995278/94‑1 (MQ=60)
ATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGC > SRR4302532.2352693/1‑94 (MQ=60)
TAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCC < SRR4302532.2804211/94‑1 (MQ=60)
TAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCC < SRR4302532.1143736/94‑1 (MQ=60)
TAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCC > SRR4302532.6115021/1‑94 (MQ=60)
AATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCG > SRR4302532.2856714/1‑94 (MQ=60)
ATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGC > SRR4302532.3571212/1‑94 (MQ=60)
ATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGC > SRR4302532.2348405/1‑94 (MQ=60)
CAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCA > SRR4302532.2837226/1‑94 (MQ=60)
CAGGGTGGAGAGGGCGAAGAACGGGTCAATCACTGCGCTGGGTGCGTCTTGCATCAGCAACATGTCGGCCTCGTTAATGCCTTTCGAGCCGCCA > SRR4302532.1750845/1‑94 (MQ=60)
AGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAA > SRR4302532.1095051/1‑94 (MQ=60)
GGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATC > SRR4302532.442500/1‑94 (MQ=60)
GTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCG < SRR4302532.5739750/94‑1 (MQ=60)
GTGGAGTCGGCGAAGAACGGGTCAAGCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCagtgat < SRR4302532.820777/94‑7 (MQ=60)
GGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAG < SRR4302532.5007295/94‑1 (MQ=60)
GGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAG < SRR4302532.1143935/94‑1 (MQ=60)
GGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAG < SRR4302532.588271/94‑1 (MQ=60)
GGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAG < SRR4302532.512295/94‑1 (MQ=60)
GAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGG < SRR4302532.631071/94‑1 (MQ=60)
AGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGA < SRR4302532.4734335/94‑1 (MQ=60)
AGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGA < SRR4302532.2135489/94‑1 (MQ=60)
AGTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGA < SRR4302532.3138504/94‑1 (MQ=60)
AGTCGGCGAAGAAAGGGTCAATCACTGCGGTATGTGCGTCTGGCATCACAACCATGTCGGACTCGTTAATGCCTTTCCTGCCGCAAATCGAagc > SRR4302532.3275427/1‑91 (MQ=59)
GTCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAG < SRR4302532.868537/94‑1 (MQ=60)
TCGGCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACCCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGC < SRR4302532.5333242/94‑1 (MQ=60)
GCGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGT < SRR4302532.5943891/94‑1 (MQ=60)
CGAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTC > SRR4302532.4739164/1‑94 (MQ=60)
GAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCA > SRR4302532.2412116/1‑94 (MQ=60)
GAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCA < SRR4302532.6096792/94‑1 (MQ=60)
GAAGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAAGTCCTTTCCAGCCGCCAATCGAGGAGGCGTCA < SRR4302532.1713949/94‑1 (MQ=60)
AGAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAA > SRR4302532.4414493/1‑94 (MQ=60)
GAACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAAC < SRR4302532.5479147/94‑1 (MQ=60)
AACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACA < SRR4302532.135285/94‑1 (MQ=60)
ACGGGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACAT < SRR4302532.3058697/94‑1 (MQ=60)
GGTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTT < SRR4302532.5827114/94‑1 (MQ=60)
GTCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTG > SRR4302532.176903/1‑94 (MQ=60)
GCAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAGTGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGC < SRR4302532.5190638/94‑1 (MQ=60)
CAATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCC < SRR4302532.1260520/94‑1 (MQ=60)
AATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCT > SRR4302532.6058949/1‑94 (MQ=60)
AATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCT < SRR4302532.1793452/94‑1 (MQ=60)
ATGACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTT > SRR4302532.6315031/1‑94 (MQ=60)
ATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTT < SRR4302532.569571/94‑1 (MQ=60)
ATCACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTT > SRR4302532.5479041/1‑94 (MQ=60)
CACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCT > SRR4302532.5752386/1‑94 (MQ=60)
CACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCT > SRR4302532.2065398/1‑94 (MQ=60)
ACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTT > SRR4302532.4887436/1‑94 (MQ=60)
ACTGCGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTT < SRR4302532.2941358/94‑1 (MQ=60)
CGGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAA > SRR4302532.374023/1‑94 (MQ=60)
GGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAG > SRR4302532.2474726/1‑94 (MQ=60)
GGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAG < SRR4302532.4781541/94‑1 (MQ=60)
GGTGGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAG < SRR4302532.4301508/94‑1 (MQ=60)
GGGTGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAGAAT > SRR4302532.5426713/1‑94 (MQ=60)
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CACGGTCATAGCCTTGCAGGGTGCCAGGTTCAAGGATGTCGCAACGGATAATCAGGGTGGAGTCGGCGAAGAACGGGTCAATCACTGCGGTGGATGCGTCTGGCATCAGCACCATGTCGGACTCGTTAATGCCTTTCCAGCCGCCAATCGAGGAGCCGTCAAACATTTTGCCTTCTTCGAAGAAT > NC_000913/4055305‑4055489
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
