Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,194,577 2 bp→GC coding (97‑98/774 nt) yjaD → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,194,5770CG100.0% 555.7 / NA 155R33A (CGG→GCG) yjaDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (48/107);  total (48/107)
*NC_0009134,194,5780GC100.0% 551.9 / NA 155R33A (CGG→GCG) yjaDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (48/107);  total (48/107)

Only 100 of 163 total aligned reads displayed.

ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGC  >  NC_000913/4194490‑4194664
                                                                                       ||                                                                                      
ataATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGAGAAGCGGCa                                                                                    >  1:1664268/1‑93 (MQ=255)
    ttGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAtt                                                                                <  2:2964004/93‑1 (MQ=255)
    ttGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAAtt                                                                                <  1:3627559/93‑1 (MQ=255)
      gAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTc                                                                              <  1:678096/93‑1 (MQ=255)
        aaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGa                                                                            <  1:3255242/93‑1 (MQ=255)
        aaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGa                                                                            <  1:284660/93‑1 (MQ=255)
        aaaaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGa                                                                            <  2:4844490/93‑1 (MQ=255)
         aaaTTAGATCACGGCTGGTGGTTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGAt                                                                           <  1:3146515/93‑1 (MQ=255)
          aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                          >  2:2523626/1‑93 (MQ=255)
          aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                          <  1:4733308/93‑1 (MQ=255)
          aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                          <  2:2046767/93‑1 (MQ=255)
          aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATc                                                                          <  1:2449477/93‑1 (MQ=255)
          aaTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGAAAATTTcactc                                                                          >  2:942540/1‑89 (MQ=255)
           aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                         <  2:2614475/93‑1 (MQ=255)
           aTTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCt                                                                         >  2:1436267/1‑93 (MQ=255)
             tAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtg                                                                       <  2:2816207/93‑1 (MQ=255)
              aGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgt                                                                      <  2:1803224/93‑1 (MQ=255)
              aGATCACGGCTGGTGGGCCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgt                                                                      >  1:4298569/1‑93 (MQ=255)
               gATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     <  2:2174071/93‑1 (MQ=255)
               gATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTtgtg                                                                     <  1:3944669/93‑1 (MQ=255)
                aTCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTgg                                                                    <  1:2472927/93‑1 (MQ=255)
                 tCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTggg                                                                   <  1:1023033/93‑1 (MQ=255)
                 tCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTggg                                                                   <  1:5976643/93‑1 (MQ=255)
                 tCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTggg                                                                   <  2:2197764/93‑1 (MQ=255)
                   aCGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTc                                                                 >  2:5048486/1‑93 (MQ=255)
                   aCGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTc                                                                 <  2:766106/93‑1 (MQ=255)
                   aCGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTc                                                                 <  1:5391491/93‑1 (MQ=255)
                     ggCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAg                                                               >  2:2814777/1‑93 (MQ=255)
                      gCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgc                                                              <  2:4262456/93‑1 (MQ=255)
                      gCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgc                                                              <  1:576488/93‑1 (MQ=255)
                       gtggtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcg                                                             <  2:1312956/92‑1 (MQ=255)
                        tggtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgc                                                            >  1:1646432/1‑93 (MQ=255)
                          gtggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgcgc                                                          >  2:5550414/1‑93 (MQ=255)
                           tggGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCa                                                         <  2:4745855/93‑1 (MQ=255)
                            gggTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCAc                                                        <  1:968221/93‑1 (MQ=255)
                             ggTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAgcgagccgt                                                       >  1:2690683/1‑90 (MQ=255)
                              gtcgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTa                                                      >  2:1500443/1‑93 (MQ=255)
                               tcgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTAc                                                     <  1:5875998/93‑1 (MQ=255)
                               tcgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTAc                                                     <  2:4973841/93‑1 (MQ=255)
                                cgtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACa                                                    <  2:4519479/93‑1 (MQ=255)
                                 gttaGCCATGAAAAACAATTATGGTTGGCGAAGGGCGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaa                                                   <  2:1617028/90‑1 (MQ=255)
                                 gtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaa                                                   <  2:1617029/93‑1 (MQ=255)
                                 gtcAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACaa                                                   >  2:1874120/1‑93 (MQ=255)
                                   cAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAAt                                                 >  2:3624703/1‑93 (MQ=255)
                                    aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATc                                                >  1:1125161/1‑93 (MQ=255)
                                    aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATc                                                <  2:3177114/93‑1 (MQ=255)
                                    aGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATc                                                >  2:3488745/1‑93 (MQ=255)
                                       cATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGc                                             >  1:2036837/1‑93 (MQ=255)
                                        aTGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCg                                            >  1:5193598/1‑93 (MQ=255)
                                         tGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGa                                           <  1:3784375/93‑1 (MQ=255)
                                           aaCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAt                                         >  1:2941388/1‑93 (MQ=255)
                                            aCAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATg                                        >  2:4307812/1‑93 (MQ=255)
                                              aaaaaTTATGGTTGCCGAAGGGATAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGc                                      >  2:5691284/1‑93 (MQ=255)
                                              aaaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGc                                      <  2:1572092/93‑1 (MQ=255)
                                               aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                     >  1:5707043/1‑93 (MQ=255)
                                               aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                     <  1:4050547/93‑1 (MQ=255)
                                               aaaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCa                                     <  1:5197427/93‑1 (MQ=255)
                                                aaaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAg                                    <  2:759655/93‑1 (MQ=255)
                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  1:4104398/93‑1 (MQ=255)
                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  2:1069812/93‑1 (MQ=255)
                                                 aaTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAgg                                   <  1:5889574/93‑1 (MQ=255)
                                                  aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                  <  2:1931971/93‑1 (MQ=255)
                                                  aTTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAggg                                  <  2:5195116/93‑1 (MQ=255)
                                                     aTGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGa                               <  2:680700/93‑1 (MQ=255)
                                                     aTGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGa                               <  1:4568759/93‑1 (MQ=255)
                                                      tGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCGGGGGGaa                              >  2:5237324/1‑93 (MQ=255)
                                                       ggTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAc                             <  1:922026/93‑1 (MQ=255)
                                                        gTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAcc                            <  1:4272354/93‑1 (MQ=255)
                                                        gTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAAcc                            >  2:1142104/1‑93 (MQ=255)
                                                         ttGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCt                           <  2:1486306/93‑1 (MQ=255)
                                                            ccGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGtt                        <  2:174879/93‑1 (MQ=255)
                                                            ccGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGtt                        <  1:2783065/93‑1 (MQ=255)
                                                             cGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGttt                       <  2:1795597/93‑1 (MQ=255)
                                                              gAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTg                      <  1:722977/93‑1 (MQ=255)
                                                               aaGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTgg                     >  2:2771367/1‑93 (MQ=255)
                                                               aaGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTgg                     <  2:2542655/93‑1 (MQ=255)
                                                                aGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGt                    <  1:4875001/93‑1 (MQ=255)
                                                                 gggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGGACCTGTTTGGtt                   >  1:1039513/1‑93 (MQ=255)
                                                                 gggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGtt                   <  2:229942/93‑1 (MQ=255)
                                                                  ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                  <  1:1403853/93‑1 (MQ=255)
                                                                  ggAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTa                  <  2:1431464/93‑1 (MQ=255)
                                                                     gaATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTa               >  2:3688151/1‑93 (MQ=255)
                                                                      aaTTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTac              >  2:2731868/1‑93 (MQ=255)
                                                                        ttGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaa            <  2:4490697/93‑1 (MQ=255)
                                                                        ttGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaa            >  2:3984596/1‑93 (MQ=255)
                                                                         tGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaac           <  2:4636390/93‑1 (MQ=255)
                                                                         tGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaac           <  2:2711/93‑1 (MQ=255)
                                                                          gCCGTATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca          <  2:1275503/93‑1 (MQ=255)
                                                                          gCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca          <  1:3430099/93‑1 (MQ=255)
                                                                          gCCATATGGCGAAGCCGCAAATTTCGATCTTGTGAGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTacaaca          <  1:3241680/93‑1 (MQ=255)
                                                                           ccATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcag         >  2:1056241/1‑93 (MQ=255)
                                                                            cATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc        <  2:1567597/93‑1 (MQ=255)
                                                                            cATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagc        <  1:211027/93‑1 (MQ=255)
                                                                              tatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagcag      >  1:4959808/1‑93 (MQ=255)
                                                                              tatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagcag      <  2:5325143/93‑1 (MQ=255)
                                                                              tatGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAAcagcag      <  1:1903640/93‑1 (MQ=255)
                                                                               atGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACagcagc     <  2:1320008/93‑1 (MQ=255)
                                                                               atGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACagcagc     <  1:301361/93‑1 (MQ=255)
                                                                                tGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcg    <  1:2193880/93‑1 (MQ=255)
                                                                                  gCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAgcggc  <  2:4783156/93‑1 (MQ=255)
                                                                                       ||                                                                                      
ATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGC  >  NC_000913/4194490‑4194664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  >  NC_000913/4194484‑4194666
                                                                                              |                                                                                         
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAG                                                                                           >  SRR4302532.5802616/1‑94 (MQ=60)
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAG                                                                                           <  SRR4302532.614401/94‑1 (MQ=60)
   CGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGG                                                                                         >  SRR4302532.1720984/1‑94 (MQ=60)
     TATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCA                                                                                      <  SRR4302532.3811166/94‑1 (MQ=60)
       TAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAA                                                                                    <  SRR4302532.4611464/94‑1 (MQ=60)
          TTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTT                                                                                 <  SRR4302532.3749199/94‑1 (MQ=60)
           TGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTC                                                                                >  SRR4302532.5057211/1‑94 (MQ=60)
            GAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCG                                                                               <  SRR4302532.701416/94‑1 (MQ=60)
              AAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGAT                                                                             <  SRR4302532.294493/94‑1 (MQ=60)
              AAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGAT                                                                             <  SRR4302532.3363374/94‑1 (MQ=60)
               AAATTAGATCACGGCTGGTGGTTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATC                                                                            <  SRR4302532.3250923/94‑1 (MQ=60)
               AAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATC                                                                            <  SRR4302532.5496258/94‑1 (MQ=60)
                AATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCT                                                                           <  SRR4302532.4894878/94‑1 (MQ=60)
                AATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCT                                                                           <  SRR4302532.2530923/94‑1 (MQ=60)
                   TAGATCACGGCTGGTGGGCCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGT                                                                        >  SRR4302532.4443803/1‑94 (MQ=60)
                     GATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGG                                                                      <  SRR4302532.4077600/94‑1 (MQ=60)
                      ATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGG                                                                     <  SRR4302532.2001281/94‑1 (MQ=60)
                      ATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGG                                                                     <  SRR4302532.2555282/94‑1 (MQ=60)
                      ATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGG                                                                     <  SRR4302532.6065460/94‑1 (MQ=60)
                       TCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGT                                                                    <  SRR4302532.6183219/94‑1 (MQ=60)
                       TCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGT                                                                    <  SRR4302532.1057680/94‑1 (MQ=60)
                        CACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAACTTTCGATCTTGTGGGTC                                                                   >  SRR4302532.4138900/1‑94 (MQ=60)
                        CACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTC                                                                   >  SRR4302532.83287/1‑94 (MQ=60)
                         ACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCA                                                                  <  SRR4302532.5578277/94‑1 (MQ=60)
                          CGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAG                                                                 >  SRR4302532.2125393/1‑94 (MQ=60)
                           GGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGC                                                                <  SRR4302532.3432828/94‑1 (MQ=60)
                            GCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCG                                                               <  SRR4302532.596588/94‑1 (MQ=60)
                            GCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCG                                                               <  SRR4302532.1691017/94‑1 (MQ=60)
                             CTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGC                                                              >  SRR4302532.1702214/1‑94 (MQ=60)
                              TGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCG                                                             <  SRR4302532.1090530/94‑1 (MQ=60)
                               GGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGC                                                            <  SRR4302532.3327301/94‑1 (MQ=60)
                                  GGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGagccgt                                                         >  SRR4302532.2781064/1‑88 (MQ=60)
                                  GGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACT                                                         <  SRR4302532.1001257/94‑1 (MQ=60)
                                  GGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACT                                                         >  SRR4302532.2795804/1‑94 (MQ=60)
                                  GGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACT                                                         <  SRR4302532.1001256/94‑1 (MQ=60)
                                     TCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACA                                                      <  SRR4302532.6079572/94‑1 (MQ=60)
                                     TCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACA                                                      <  SRR4302532.2496729/94‑1 (MQ=60)
                                       GTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAA                                                    >  SRR4302532.6308694/1‑94 (MQ=60)
                                       GTCAGCCATGAACAAAAATTATGCTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGACAGCGCGCACTACAAA                                                    <  SRR4302532.3662763/94‑1 (MQ=60)
                                         CAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATC                                                  >  SRR4302532.1162712/1‑94 (MQ=60)
                                          AGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCG                                                 >  SRR4302532.5335682/1‑94 (MQ=60)
                                            CCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGC                                               >  SRR4302532.2104683/1‑94 (MQ=60)
                                             CATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCG                                              >  SRR4302532.5372600/1‑94 (MQ=60)
                                               TGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAA                                            <  SRR4302532.3912001/94‑1 (MQ=60)
                                                GAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAAT                                           >  SRR4302532.3039057/1‑94 (MQ=60)
                                                 AACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATG                                          >  SRR4302532.4033339/1‑94 (MQ=60)
                                                  ACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGG                                         <  SRR4302532.6171846/94‑1 (MQ=60)
                                                   CAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGC                                        <  SRR4302532.4759793/94‑1 (MQ=60)
                                                    AAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCA                                       >  SRR4302532.5906014/1‑94 (MQ=60)
                                                     AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302532.4186852/94‑1 (MQ=60)
                                                     AAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAG                                      <  SRR4302532.5376595/94‑1 (MQ=60)
                                                       AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302532.4242152/94‑1 (MQ=60)
                                                       AATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGG                                    <  SRR4302532.6093538/94‑1 (MQ=60)
                                                         TTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGG                                  <  SRR4302532.4417911/94‑1 (MQ=60)
                                                          TATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGA                                 <  SRR4302532.2555851/94‑1 (MQ=60)
                                                           ATGGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAA                                <  SRR4302532.4724589/94‑1 (MQ=60)
                                                             GGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACC                              <  SRR4302532.3063339/94‑1 (MQ=60)
                                                             GGTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACC                              <  SRR4302532.953614/94‑1 (MQ=60)
                                                              GTTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCT                             <  SRR4302532.4416204/94‑1 (MQ=60)
                                                               TTGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCCCTACAAATCGGCGACTGGCAGGGGAAACCTG                            <  SRR4302532.5157196/94‑1 (MQ=60)
                                                                TGCCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGT                           <  SRR4302532.3032107/94‑1 (MQ=60)
                                                                  CCGAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTT                         <  SRR4302532.2876425/94‑1 (MQ=60)
                                                                  CCGAAGGGAGAATTGCCATATGGCGAACCGGCAAATTTCGGTCTCGTGGGTCACCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCggatt                         >  SRR4302532.4958210/1‑89 (MQ=60)
                                                                   CGAATGGAGAATTTCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTG                        <  SRR4302532.4413205/94‑1 (MQ=60)
                                                                    GAAGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGG                       <  SRR4302532.747633/94‑1 (MQ=60)
                                                                      AGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGGACCTGTTTGGTT                     >  SRR4302532.1074573/1‑94 (MQ=60)
                                                                      AGGGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTT                     <  SRR4302532.5042594/94‑1 (MQ=60)
                                                                        GGAGAATTGCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAG                   <  SRR4302532.1450871/94‑1 (MQ=60)
                                                                                GCCATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG           <  SRR4302532.3545034/94‑1 (MQ=60)
                                                                                GCCATATGGCGAAGCCGCAAATTTCGATCTTGTGAGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAG           <  SRR4302532.3349314/94‑1 (MQ=60)
                                                                                  CATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCA         <  SRR4302532.218229/94‑1 (MQ=60)
                                                                                   ATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAG        >  SRR4302532.5129930/1‑94 (MQ=60)
                                                                                   ATATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAATACAACAGCAG        <  SRR4302532.5641350/94‑1 (MQ=60)
                                                                                    TATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGC       <  SRR4302532.1966775/94‑1 (MQ=60)
                                                                                     ATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCG      <  SRR4302532.1713609/94‑1 (MQ=60)
                                                                                     ATGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCG      <  SRR4302532.311796/94‑1 (MQ=60)
                                                                                      TGGCGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGG     <  SRR4302532.2266970/94‑1 (MQ=60)
                                                                                         CGAAGCGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  >  SRR4302532.5173136/1‑94 (MQ=60)
                                                                                              |                                                                                         
GATCGTATAATTGAAAAATTAGATCACGGCTGGTGGGTCGTCAGCCATGAACAAAAATTATGGTTGCCGAAGGGAGAATTGCCATATGGCGAACGGGCAAATTTCGATCTTGTGGGTCAGCGCGCACTACAAATCGGCGAATGGCAGGGGGAACCTGTTTGGTTAGTACAACAGCAGCGGCGT  >  NC_000913/4194484‑4194666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: